mRNA_H-paniculata_contig15441.3187.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15441.3187.1
Unique NamemRNA_H-paniculata_contig15441.3187.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15441.3187.1 vs. uniprot
Match: D8LLE7_ECTSI (Coatomer protein complex, gamma sub-unit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE7_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 6.980e-55
Identity = 86/95 (90.53%), Postives = 90/95 (94.74%), Query Frame = 1 
Query:    1 SPYQDLEKATVLQECRVFSDSNVVTNNPKRCCQLITKLLFILTQGETFSSSETTEVFFGVTKLFQSQDYNLRRMMYIFIKEVAETCDPDDVIIGE 285
            SPYQDLEKATVLQECRVFSDSNVVTNNP+RC  LITKLL+IL  GET SSSETTEVFFGVTKLFQSQD+NLRRMMY+FIKEVAETCDPDDVIIGE
Sbjct:   51 SPYQDLEKATVLQECRVFSDSNVVTNNPRRCGMLITKLLYILNTGETLSSSETTEVFFGVTKLFQSQDHNLRRMMYLFIKEVAETCDPDDVIIGE 145
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BLAST of mRNA_H-paniculata_contig15441.3187.1 vs. uniprot
Match: A0A836CC02_9STRA (Coatomer subunit gamma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC02_9STRA)

HSP 1 Score: 160 bits (406), Expect = 7.460e-44
Identity = 77/93 (82.80%), Postives = 86/93 (92.47%), Query Frame = 1 
Query:    1 SPYQDLEKATVLQECRVFSDSNVVTNNPKRCCQLITKLLFILTQGETFSSSETTEVFFGVTKLFQSQDYNLRRMMYIFIKEVAETCDPDDVII 279
            SPY  LEKATVLQECR F+DSNVVTNNPKRCCQLITKLL +LTQGETF+SSE T+VFFGVTKLFQS+D+NLRRMMY+FIKEVAE  +P+DVII
Sbjct:   48 SPYHALEKATVLQECRAFNDSNVVTNNPKRCCQLITKLLHLLTQGETFTSSEVTDVFFGVTKLFQSKDHNLRRMMYLFIKEVAEATNPNDVII 140
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BLAST of mRNA_H-paniculata_contig15441.3187.1 vs. uniprot
Match: A0A6U1MSQ3_9STRA (Coatomer subunit gamma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MSQ3_9STRA)

HSP 1 Score: 152 bits (385), Expect = 5.150e-41
Identity = 74/93 (79.57%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:    1 SPYQDLEKATVLQECRVFSDSNVVTNNPKRCCQLITKLLFILTQGETFSSSETTEVFFGVTKLFQSQDYNLRRMMYIFIKEVAETCDPDDVII 279
            SP+ DLEKA VLQECR FSDSNVVT++P+RC  LITKLL IL+ G+TFSSSETTEVFFGVTKLFQS D NLRRMMY+FIKEVA+ C+PDDVII
Sbjct:   38 SPFADLEKAAVLQECRAFSDSNVVTHHPQRCSHLITKLLHILSTGDTFSSSETTEVFFGVTKLFQSHDANLRRMMYLFIKEVADNCNPDDVII 130
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BLAST of mRNA_H-paniculata_contig15441.3187.1 vs. uniprot
Match: A0A4D9D1Q3_9STRA (Adaptin_N domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1Q3_9STRA)

HSP 1 Score: 149 bits (376), Expect = 2.380e-40
Identity = 71/93 (76.34%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:    1 SPYQDLEKATVLQECRVFSDSNVVTNNPKRCCQLITKLLFILTQGETFSSSETTEVFFGVTKLFQSQDYNLRRMMYIFIKEVAETCDPDDVII 279
            SPYQDLEKA+VLQECRVF D+N+VT +P+ CCQLITKLL IL+QGE  +S ETT VFFGVTKLFQS + NLRRMMY+FIKE+AE C+PDDVII
Sbjct:   54 SPYQDLEKASVLQECRVFHDANIVTQDPRLCCQLITKLLHILSQGEQLTSVETTTVFFGVTKLFQSHNSNLRRMMYLFIKEMAEACNPDDVII 146
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BLAST of mRNA_H-paniculata_contig15441.3187.1 vs. uniprot
Match: A0A6S8VPR0_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8VPR0_9STRA)

HSP 1 Score: 150 bits (378), Expect = 2.650e-40
Identity = 72/93 (77.42%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:    1 SPYQDLEKATVLQECRVFSDSNVVTNNPKRCCQLITKLLFILTQGETFSSSETTEVFFGVTKLFQSQDYNLRRMMYIFIKEVAETCDPDDVII 279
            SP+ DLEKATVLQECRVFSDS VVT +P++C QLITKLL I+TQG+  SSSE TEVFFGVTKLFQS D +LRRM+Y FIKEVAETC+PDD+II
Sbjct:   65 SPFSDLEKATVLQECRVFSDSKVVTESPRKCSQLITKLLHIVTQGDAMSSSEVTEVFFGVTKLFQSSDASLRRMIYFFIKEVAETCNPDDIII 157
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BLAST of mRNA_H-paniculata_contig15441.3187.1 vs. uniprot
Match: F0Y6T5_AURAN (Coatomer subunit gamma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6T5_AURAN)

HSP 1 Score: 150 bits (379), Expect = 3.350e-40
Identity = 73/93 (78.49%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:    1 SPYQDLEKATVLQECRVFSDSNVVTNNPKRCCQLITKLLFILTQGETFSSSETTEVFFGVTKLFQSQDYNLRRMMYIFIKEVAETCDPDDVII 279
            SP+ DLEKATVLQECRVFSDS VVT++P++C QLITKLL I+TQG+  SSSE TEVFFGVTKLFQS D +LRRM+Y FIKEVAETC+PDDVII
Sbjct:   39 SPFADLEKATVLQECRVFSDSKVVTDSPRKCSQLITKLLHIVTQGDAMSSSEVTEVFFGVTKLFQSSDASLRRMVYFFIKEVAETCNPDDVII 131
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BLAST of mRNA_H-paniculata_contig15441.3187.1 vs. uniprot
Match: A0A7S3ZYC8_9STRA (Hypothetical protein (Fragment) n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYC8_9STRA)

HSP 1 Score: 150 bits (378), Expect = 3.520e-40
Identity = 72/93 (77.42%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:    1 SPYQDLEKATVLQECRVFSDSNVVTNNPKRCCQLITKLLFILTQGETFSSSETTEVFFGVTKLFQSQDYNLRRMMYIFIKEVAETCDPDDVII 279
            SP+ DLEKATVLQECRVFSDS VVT +P++C QLITKLL I+TQG+  SSSE TEVFFGVTKLFQS D +LRRM+Y FIKEVAETC+PDD+II
Sbjct:   65 SPFSDLEKATVLQECRVFSDSKVVTESPRKCSQLITKLLHIVTQGDAMSSSEVTEVFFGVTKLFQSSDASLRRMIYFFIKEVAETCNPDDIII 157
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BLAST of mRNA_H-paniculata_contig15441.3187.1 vs. uniprot
Match: I2CP15_NANGC (Adaptin_N domain-containing protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CP15_NANGC)

HSP 1 Score: 149 bits (376), Expect = 4.500e-40
Identity = 71/93 (76.34%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:    1 SPYQDLEKATVLQECRVFSDSNVVTNNPKRCCQLITKLLFILTQGETFSSSETTEVFFGVTKLFQSQDYNLRRMMYIFIKEVAETCDPDDVII 279
            SPYQDLEKA+VLQECRVF D+N+VT +P+ CCQLITKLL IL+QGE  +S ETT VFFGVTKLFQS + NLRRMMY+FIKE+AE C+PDDVII
Sbjct:   54 SPYQDLEKASVLQECRVFHDANIVTQDPRLCCQLITKLLHILSQGEQLTSVETTTVFFGVTKLFQSHNSNLRRMMYLFIKEMAEACNPDDVII 146
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BLAST of mRNA_H-paniculata_contig15441.3187.1 vs. uniprot
Match: A0A7S2S5Q9_9STRA (Coatomer subunit gamma n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5Q9_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.160e-39
Identity = 72/93 (77.42%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:    1 SPYQDLEKATVLQECRVFSDSNVVTNNPKRCCQLITKLLFILTQGETFSSSETTEVFFGVTKLFQSQDYNLRRMMYIFIKEVAETCDPDDVII 279
            SP+QDLEKATVLQECR F+ + VVT NP+RC  LITKLL I+TQGE+ +S+E TEVFFGVTKLFQSQD  LRRMMY+FIKEVAETC+PDDVII
Sbjct:   37 SPFQDLEKATVLQECRCFNQAEVVTQNPRRCATLITKLLHIVTQGESLTSTEVTEVFFGVTKLFQSQDPYLRRMMYLFIKEVAETCNPDDVII 129
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BLAST of mRNA_H-paniculata_contig15441.3187.1 vs. uniprot
Match: F0YM71_AURAN (Coatomer subunit gamma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YM71_AURAN)

HSP 1 Score: 148 bits (374), Expect = 1.560e-39
Identity = 72/93 (77.42%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:    1 SPYQDLEKATVLQECRVFSDSNVVTNNPKRCCQLITKLLFILTQGETFSSSETTEVFFGVTKLFQSQDYNLRRMMYIFIKEVAETCDPDDVII 279
            SP+ DLEKATVLQECRVFSD+ VVT +P++C QLITKLL I+TQG+  SSSE TEVFFGVTKLFQS D +LRRM+Y FIKEVAETC+PDDVII
Sbjct:   36 SPFADLEKATVLQECRVFSDAKVVTESPRKCSQLITKLLHIVTQGDAMSSSEVTEVFFGVTKLFQSTDASLRRMVYFFIKEVAETCNPDDVII 128
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15441.3187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLE7_ECTSI6.980e-5590.53Coatomer protein complex, gamma sub-unit n=1 Tax=E... [more]
A0A836CC02_9STRA7.460e-4482.80Coatomer subunit gamma n=1 Tax=Tribonema minus Tax... [more]
A0A6U1MSQ3_9STRA5.150e-4179.57Coatomer subunit gamma n=1 Tax=Fibrocapsa japonica... [more]
A0A4D9D1Q3_9STRA2.380e-4076.34Adaptin_N domain-containing protein n=1 Tax=Nannoc... [more]
A0A6S8VPR0_9STRA2.650e-4077.42Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
F0Y6T5_AURAN3.350e-4078.49Coatomer subunit gamma n=1 Tax=Aureococcus anophag... [more]
A0A7S3ZYC8_9STRA3.520e-4077.42Hypothetical protein (Fragment) n=4 Tax=Pelagomona... [more]
I2CP15_NANGC4.500e-4076.34Adaptin_N domain-containing protein n=2 Tax=Nannoc... [more]
A0A7S2S5Q9_9STRA1.160e-3977.42Coatomer subunit gamma n=1 Tax=Rhizochromulina mar... [more]
F0YM71_AURAN1.560e-3977.42Coatomer subunit gamma n=1 Tax=Aureococcus anophag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15441contigH-paniculata_contig15441:4658..6160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue6.3e-42
Seed eggNOG ortholog2880.D8LLE7
Preferred nameCOPG
KEGG koko:K17267
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0005829,GO:0005886,GO:0005911,GO:0009506,GO:0009507,GO:0009536,GO:0012505,GO:0012506,GO:0016020,GO:0030054,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0048475,GO:0055044,GO:0071944,GO:0097708,GO:0098588,GO:0098796,GO:0098805
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG5240@1,KOG1078@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Exons2
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929236.102706-CDS-H-paniculata_contig15441:4657..47771622929236.102706-CDS-H-paniculata_contig15441:4657..4777Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15441 4658..4777 -
1691480781.8334231-CDS-H-paniculata_contig15441:4657..47771691480781.8334231-CDS-H-paniculata_contig15441:4657..4777Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15441 4658..4777 -
1622929236.118444-CDS-H-paniculata_contig15441:5995..61601622929236.118444-CDS-H-paniculata_contig15441:5995..6160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15441 5996..6160 -
1691480781.8469296-CDS-H-paniculata_contig15441:5995..61601691480781.8469296-CDS-H-paniculata_contig15441:5995..6160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15441 5996..6160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15441.3187.1prot_H-paniculata_contig15441.3187.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15441 4658..6160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15441.3187.1

>prot_H-paniculata_contig15441.3187.1 ID=prot_H-paniculata_contig15441.3187.1|Name=mRNA_H-paniculata_contig15441.3187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
SPYQDLEKATVLQECRVFSDSNVVTNNPKRCCQLITKLLFILTQGETFSS
SETTEVFFGVTKLFQSQDYNLRRMMYIFIKEVAETCDPDDVIIGE
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mRNA from alignment at H-paniculata_contig15441:4658..6160-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15441.3187.1 ID=mRNA_H-paniculata_contig15441.3187.1|Name=mRNA_H-paniculata_contig15441.3187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1503bp|location=Sequence derived from alignment at H-paniculata_contig15441:4658..6160- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCCCGTACCAAGACCTGGAGAAGGCGACTGTTCTGCAGGAGTGCCGCGT
TTTCAGCGACAGCAACGTGGTAACAAACAATCCCAAAAGATGCTGCCAGC
TTATCACCAAGCTCCTCTTCATCCTCACCCAGGGCGAGACCTTTTCATCT
TCGGAGACTACAGAGGTAGCACAAGTTTCATCTCCCTGAGGAAGCACAGA
CGAACGCAATTATTTCTCGAGGATTCCCCCTAAATAACGAAATAGTTTAT
ATAGTGCTTCGCCTCAAGGATGGTTCAGCCCTGATCGCTATTGGTGATTC
GATGTACTCGATGCAATGTACGATGTAACGATTGTAGCTGCTTTGAATTG
GTAGGTTAGTAGGTTAACCGAACCTCAGGTCTTTACGAGCGTCTTATCTC
CTTATCAGGTGTTGAATGCTTGCTTATGATTTGGCCGCTACGGAACGGAA
CGGAGGAAAAATAAAAATAAAGAGAAAGAGCTTGATCCTTCTCGCTCATC
AGTAAGATTCAAGATAAAATCCCCAAACAACGAAAAACAAGCTATGTTAA
GCTGGTTAAGCGTTCTGTCCACATAGTGGTCATAATCCATGACTAATCGT
CAGCGAATATATATATATATACATATATTGGCTGTTGCGAAGTCCGGTTT
CTAAAGGGTCAAGTCGAACAGTGTTCAATATTCGTGGTGAATGCTTGAAG
TAAGTATTCGTCATTCGTTATTTTCCGTGGGCCACGTGCTGCATAGCTGA
CGGTCGTGGCATACACGAAGTCATTCTTCAGTAGTCGCATGCATCCACTA
CCTGTTTACCTGTTTTCATTCTGGTAGCACATGTGTCCATACTAAAGTGC
AAGGTAAAACGAGGTAAAAGGTGGGTTAACTCGGCTCAGCACTTTGTAGG
TAGCGCTCTCTGGATGTAATTAATACCTTATAAGTTGAAAACTATGCCTC
TTTTTTCGCTCCTTTACGAAGGCGCTTTACTAAGGCGGATACGACTTTTA
AGGCAGCCATCGTCGGATCGGGTCTCGGTCATTTTCCTGAGACCTGGTTG
TTTACTGTCATTTTCCAGTCGTATCAGAAGATCAATATGGAGAAGTGTGG
AGTATGTAGGGTGTTTTTTGTTTTTTGTTTTTTTTGTATATCTGTTTTTA
GGGCGGGGGTGATTCCGTTGTAGATAAGTTCATCTGTCGGAACCCTCAGT
CCGAAGCTGGGCATTTGTTCCATTCACAGTTCGAAAATATGTACAGATTA
TTTCAAAAAAGAATTCGTGAATCAGCTAAAATTGTCGCCTGTTATATTTT
GGGTGAAAATGGTTGATAGCCTTTTTACACGTTTTGTTAGATGACAGAAA
AATAATAATGGATTTTTTTTTTTGTTTTTTTAGGTCTTCTTCGGAGTGAC
GAAGCTGTTCCAAAGTCAGGACTATAACCTACGGCGTATGATGTACATCT
TCATCAAGGAAGTGGCCGAGACTTGTGACCCTGATGACGTCATCATCGGT
GAG
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Coding sequence (CDS) from alignment at H-paniculata_contig15441:4658..6160-

>mRNA_H-paniculata_contig15441.3187.1 ID=mRNA_H-paniculata_contig15441.3187.1|Name=mRNA_H-paniculata_contig15441.3187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig15441:4658..6160- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCCCGTACCAAGACCTGGAGAAGGCGACTGTTCTGCAGGAGTGCCGCGT
TTTCAGCGACAGCAACGTGGTAACAAACAATCCCAAAAGATGCTGCCAGC
TTATCACCAAGCTCCTCTTCATCCTCACCCAGGGCGAGACCTTTTCATCT
TCGGAGACTACAGAGTCCCCGTACCAAGACCTGGAGAAGGCGACTGTTCT
GCAGGAGTGCCGCGTTTTCAGCGACAGCAACGTGGTAACAAACAATCCCA
AAAGATGCTGCCAGCTTATCACCAAGCTCCTCTTCATCCTCACCCAGGGC
GAGACCTTTTCATCTTCGGAGACTACAGAGGTCTTCTTCGGAGTGACGAA
GCTGTTCCAAAGTCAGGACTATAACCTACGGCGTATGATGTACATCTTCA
TCAAGGAAGTGGCCGAGACTTGTGACCCTGATGACGTCATCATCGGTGAG
GTCTTCTTCGGAGTGACGAAGCTGTTCCAAAGTCAGGACTATAACCTACG
GCGTATGATGTACATCTTCATCAAGGAAGTGGCCGAGACTTGTGACCCTG
ATGACGTCATCATCGGTGAG
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