mRNA_H-paniculata_contig15330.3127.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15330.3127.1
Unique NamemRNA_H-paniculata_contig15330.3127.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15330.3127.1 vs. uniprot
Match: D7FKN5_ECTSI (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN5_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 1.940e-57
Identity = 92/121 (76.03%), Postives = 101/121 (83.47%), Query Frame = 1
Query:    1 RICTVLDKTSMFGVTSTLKGGEQRHHQVKPLKILWDKHPHWTEKNTLHVDDLARNFALNPKCGVKVKAFKRKSSSA--SADDELMLLARYLCLVAKRE----QGWEGLDHMDWKSELRRLG 345
            RICTVLDKTSMFGVTST K GEQR HQVKPLKI+WDK+P W   NTLHVDDL+RNFALNPK GVKVKAF+RKS     + DDELMLLARYL LVAKR+    +GW+GLDHMDWK EL+RLG
Sbjct:  185 RICTVLDKTSMFGVTSTKKDGEQRRHQVKPLKIIWDKYPRWHASNTLHVDDLSRNFALNPKNGVKVKAFRRKSDGRLPTDDDELMLLARYLVLVAKRDGREGKGWDGLDHMDWKGELKRLG 305          
BLAST of mRNA_H-paniculata_contig15330.3127.1 vs. uniprot
Match: A0A6H5JCD9_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD9_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 3.830e-57
Identity = 93/121 (76.86%), Postives = 102/121 (84.30%), Query Frame = 1
Query:    1 RICTVLDKTSMFGVTSTLKGGEQRHHQVKPLKILWDKHPHWTEKNTLHVDDLARNFALNPKCGVKVKAFKRKSSSA--SADDELMLLARYLCLVAKRE----QGWEGLDHMDWKSELRRLG 345
            RICTVLDKTSMFGVTST K GEQR HQVKPLKI+WDK+P W   NTLHVDDL+RNFALNPK GVKVKAF+RKS     + DDELMLLARYL LVAKR+    +GW+GLDHMDWKSEL+RLG
Sbjct:  263 RICTVLDKTSMFGVTSTKKDGEQRRHQVKPLKIIWDKYPRWHASNTLHVDDLSRNFALNPKNGVKVKAFRRKSDGRLPTDDDELMLLARYLVLVAKRDGREGKGWDGLDHMDWKSELKRLG 383          
BLAST of mRNA_H-paniculata_contig15330.3127.1 vs. uniprot
Match: A0A836CHP5_9STRA (HAD-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHP5_9STRA)

HSP 1 Score: 127 bits (320), Expect = 9.570e-34
Identity = 63/109 (57.80%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    1 RICTVLDKTSMFGVTSTLKGGEQRHHQVKPLKILWDKHPHWTEKNTLHVDDLARNFALNPKCGVKVKAFKRKSSSASADDELMLLARYLCLVAKREQGWEGLDHMDWKS 327
            +I  VLDKTSMF VTST + G++R HQVKPL I+W K PHWTE NT HVDDL RNFALNP  G+KVKA+ R    A+ DDEL+ LA YL  +A    G    DH +W+ 
Sbjct:  187 KISFVLDKTSMFHVTSTDRAGKERRHQVKPLHIIWRKFPHWTEANTYHVDDLGRNFALNPANGIKVKAYYRGRDGATRDDELVHLAHYLLQLAAHS-GPPPADHKNWRG 294          
BLAST of mRNA_H-paniculata_contig15330.3127.1 vs. uniprot
Match: A0A7S3ZW18_9STRA (Protein-serine/threonine phosphatase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZW18_9STRA)

HSP 1 Score: 122 bits (305), Expect = 4.290e-31
Identity = 56/114 (49.12%), Postives = 74/114 (64.91%), Query Frame = 1
Query:    1 RICTVLDKTSMFGVTSTLKGGEQRHHQVKPLKILWDKHPHWTEKNTLHVDDLARNFALNPKCGVKVKAFKRKSSSASADDELMLLARYLCLVAKREQGWEGLDHMDWKSELRRL 342
            +IC VLDKTSMF + S  K G +  H VKPL+++WDK   W   NTLH+DDL+RNFALNP+ GVK KA+ R   +A+ D EL  LA YL  VA+  +G    DH  W+   +++
Sbjct:  237 KICFVLDKTSMFRIVSRRKDGSEFKHAVKPLRLIWDKVDGWNAANTLHLDDLSRNFALNPRSGVKCKAYHRDKPNAARDAELPALAAYLAHVARASKGLSAFDHGKWRDVWKKI 350          
BLAST of mRNA_H-paniculata_contig15330.3127.1 vs. uniprot
Match: A0A7S2TSB5_9EUKA (Protein-serine/threonine phosphatase n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TSB5_9EUKA)

HSP 1 Score: 121 bits (303), Expect = 8.590e-31
Identity = 57/112 (50.89%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    1 RICTVLDKTSMFGVTSTLKGGEQRHHQVKPLKILWDK-HPHWTEKNTLHVDDLARNFALNPKCGVKVKAFKRKSSSASADDELMLLARYLCLVAKREQGWEGLDHMDWKSEL 333
            +IC VLDKT MF ++S  K G  R HQVK L ++W K    WT +NT+H+DDL+RNFALNP+ G+K+KA+++   + + D ELMLL RYL L+A  E  +  LDH  WK  L
Sbjct:  235 KICFVLDKTCMFSISSKQKDGTMRKHQVKALGVVWGKFQERWTHRNTIHIDDLSRNFALNPQSGLKIKAYRKAHKNRAKDKELMLLTRYLKLIA-HEDDFSKLDHHSWKEYL 345          
BLAST of mRNA_H-paniculata_contig15330.3127.1 vs. uniprot
Match: A0A2R5G9L8_9STRA (Protein-serine/threonine phosphatase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G9L8_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.610e-29
Identity = 54/113 (47.79%), Postives = 78/113 (69.03%), Query Frame = 1
Query:    1 RICTVLDKTSMFGVTSTLKGGEQRHHQVKPLKILWDKHPHWTEKNTLHVDDLARNFALNPKCGVKVKAFKRKSSSASADDELMLLARYLCLVAKREQGWEGLDHMDWKSELRR 339
            +IC  LD+TSMF VT   + GE + H+VK L+++W K P W+ KNT+H+DDLARNFALNP+ G++   FKR+ S A+ D EL+ +A YL  +A+ E  +  LDH  W+  L++
Sbjct:  300 KICFALDRTSMFKVTRE-RDGEIKRHEVKALELIWSKFPQWSAKNTVHIDDLARNFALNPQSGLQCTCFKRRRSRAANDRELLEMAAYLEHIAENETDFSRLDHTRWRERLQK 411          
BLAST of mRNA_H-paniculata_contig15330.3127.1 vs. uniprot
Match: A0A7S1VIQ4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VIQ4_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.320e-28
Identity = 54/108 (50.00%), Postives = 71/108 (65.74%), Query Frame = 1
Query:    1 RICTVLDKTSMFGVTSTLKGGEQRHHQVKPLKILWDKHPH-WTEKNTLHVDDLARNFALNPKCGVKVKAFKRKSSSASADDELMLLARYLCLVAKREQGWEGLDHMDW 321
            + C VLDKTSMF +TS+ + G    HQVKPL+I+W K+PH W   NT+H+DDL+RNFALN   G+KV A+ RK +    D EL+ L RYL  VAK    +E ++   W
Sbjct:   33 KFCFVLDKTSMFSITSSKRDGSSYKHQVKPLQIIWSKYPHVWGAHNTVHLDDLSRNFALNLTSGLKVTAYHRKRTKGKRDAELLGLGRYLEDVAKAGVSFEQINFGKW 140          
BLAST of mRNA_H-paniculata_contig15330.3127.1 vs. uniprot
Match: A0A7S1Z7U3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z7U3_TRICV)

HSP 1 Score: 110 bits (275), Expect = 3.580e-28
Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    1 RICTVLDKTSMFGVTSTLKGGEQRHHQVKPLKILWDKHPHWTEKNTLHVDDLARNFALNPKCGVKVKAFKRKSSSASADDELMLLARYLCLVAKREQGWEGLDHMDWKSEL 333
            R C VLDKTSMF + S  + G +  H VKPL+I+W K P W   NT+H+DDL+RNFALN   G+KV  + RK SSA  D EL+ +ARYL  +A +E  ++ +D   W   +
Sbjct:   63 RFCFVLDKTSMFKIVSMKRDGTRVEHHVKPLQIIWSKFPRWGSHNTVHLDDLSRNFALNIGSGLKVTGYYRKKSSARKDCELLGIARYLEELAAKEINFDNVDFSLWADVI 173          
BLAST of mRNA_H-paniculata_contig15330.3127.1 vs. uniprot
Match: A0A067MRP3_9AGAM (FCP1 homology domain-containing protein n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067MRP3_9AGAM)

HSP 1 Score: 112 bits (279), Expect = 8.760e-28
Identity = 57/113 (50.44%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    1 RICTVLDKTSMFGVTSTLKGGEQRHHQVKPLKILWDKHPHWTEKNTLHVDDLARNFALNPKCGVKVKAFKRK-SSSASADDELMLLARYLCLVAKREQGWEGLDHMDWKSELR 336
            +I  VLDK+ MF V ST  G   +HH VKPL+I+W K PHW+ KNT+H+DDL+RNFALNP  G+K+ AFK   +  A  D EL  L+RYL L+A  +  +  ++H DWK  L+
Sbjct:  179 KISFVLDKSPMFTVFSTRDGQPFKHH-VKPLQIIWSKFPHWSAKNTIHIDDLSRNFALNPGSGLKIHAFKNAHTEQAMQDRELEKLSRYLVLLAGVDD-FRNVNHKDWKKALQ 289          
BLAST of mRNA_H-paniculata_contig15330.3127.1 vs. uniprot
Match: A0A165TGP0_9AGAM (Protein-serine/threonine phosphatase n=1 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165TGP0_9AGAM)

HSP 1 Score: 110 bits (276), Expect = 5.950e-27
Identity = 58/115 (50.43%), Postives = 75/115 (65.22%), Query Frame = 1
Query:    1 RICTVLDKTSMFGVTSTLKGGEQRHHQVKPLKILWDKHPHWTEKNTLHVDDLARNFALNPKCGVKVKAFKR-KSSSASADDELMLLARYLCLVAKREQGWEGLDHMDWKSELRRL 342
            +I  VLDKT+MF V S   G   RHH VKPL+I+W+K P + EKNT+HVDDL RNFALNP+ G+K+ AFK      A AD EL  LARY+  +A     +  + H DWK+ +R +
Sbjct:  223 KISFVLDKTTMFSVFSNRNGQPYRHH-VKPLQIIWNKFPQYNEKNTIHVDDLGRNFALNPRQGLKISAFKDCHLPQAMADRELDRLARYMVYIASLPD-FSTVQHKDWKAVVRSI 335          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15330.3127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKN5_ECTSI1.940e-5776.03FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JCD9_9PHAE3.830e-5776.86FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
A0A836CHP5_9STRA9.570e-3457.80HAD-like domain-containing protein n=1 Tax=Tribone... [more]
A0A7S3ZW18_9STRA4.290e-3149.12Protein-serine/threonine phosphatase n=1 Tax=Pelag... [more]
A0A7S2TSB5_9EUKA8.590e-3150.89Protein-serine/threonine phosphatase n=1 Tax=Lotha... [more]
A0A2R5G9L8_9STRA1.610e-2947.79Protein-serine/threonine phosphatase n=1 Tax=Honda... [more]
A0A7S1VIQ4_9STRA3.320e-2850.00Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1Z7U3_TRICV3.580e-2847.75Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A067MRP3_9AGAM8.760e-2850.44FCP1 homology domain-containing protein n=1 Tax=Bo... [more]
A0A165TGP0_9AGAM5.950e-2750.43Protein-serine/threonine phosphatase n=1 Tax=Neole... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15330contigH-paniculata_contig15330:4454..6041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue2.5e-39
Seed eggNOG ortholog2880.D7FKN5
KEGG koko:K17618
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG5190@1,KOG1605@2759
Ec32 ortholog descriptionHAD-like domain
Ec32 orthologEc-09_000890.1
EC3.1.3.16
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Exons3
Model size348
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15330.3127.1prot_H-paniculata_contig15330.3127.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15330 4454..6011 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929228.143001-CDS-H-paniculata_contig15330:4453..46191622929228.143001-CDS-H-paniculata_contig15330:4453..4619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15330 4454..4619 -
1691480778.5558853-CDS-H-paniculata_contig15330:4453..46191691480778.5558853-CDS-H-paniculata_contig15330:4453..4619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15330 4454..4619 -
1622929228.157161-CDS-H-paniculata_contig15330:5237..53381622929228.157161-CDS-H-paniculata_contig15330:5237..5338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15330 5238..5338 -
1691480778.5691795-CDS-H-paniculata_contig15330:5237..53381691480778.5691795-CDS-H-paniculata_contig15330:5237..5338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15330 5238..5338 -
1622929228.174475-CDS-H-paniculata_contig15330:5960..60111622929228.174475-CDS-H-paniculata_contig15330:5960..6011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15330 5961..6011 -
1691480778.583589-CDS-H-paniculata_contig15330:5960..60111691480778.583589-CDS-H-paniculata_contig15330:5960..6011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15330 5961..6011 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929228.2003205-UTR-H-paniculata_contig15330:6011..60411622929228.2003205-UTR-H-paniculata_contig15330:6011..6041Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15330 6012..6041 -
1691480778.5968266-UTR-H-paniculata_contig15330:6011..60411691480778.5968266-UTR-H-paniculata_contig15330:6011..6041Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15330 6012..6041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15330.3127.1

>prot_H-paniculata_contig15330.3127.1 ID=prot_H-paniculata_contig15330.3127.1|Name=mRNA_H-paniculata_contig15330.3127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
MFGVTSTLKGGEQRHHQVKPLKILWDKHPHWTEKNTLHVDDLARNFALNP
KCGVKVKAFKRKSSSASADDELMLLARYLCLVAKREQGWEGLDHMDWKSE
LRRLG*
back to top

mRNA from alignment at H-paniculata_contig15330:4454..6041-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15330.3127.1 ID=mRNA_H-paniculata_contig15330.3127.1|Name=mRNA_H-paniculata_contig15330.3127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1588bp|location=Sequence derived from alignment at H-paniculata_contig15330:4454..6041- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGATATGCACGGTGTTGGACAAGACGTCCATGTTTGGAGTTACGAGTAC GCTCAAGGGCGGAGAGCAACGCCATCACCAGGTTAGAACAGGGCGTTTTT ATCTTTCCCGTTGGTCCAATATCTGGCGCCATACAACAAGACCCTCCTCC CGAGCTTAGAGTGTTTTAAACCGAGTTTCTCGTCCCACGATTGATTCGAT ATCGGTCATCGCTCCAGGGTTTGCGGTTCACCTCTCTTGTTTTTTCGAGT ACTGTAATGTATTCCTCAATACTCGCGTGTGTGTGGCTGTCGCTGTCGTC GTAGCACCGCGAAACGTTTTTCGATGTGCAGTAATTCTTATAGTGGTCAA GTAGCATCTTTTGACAGTCTTAGCTTTTCGAAAGTCGTCGGAGTGTCTGA CGTTTTTACCGGCAGCGTTGTGGGAACAGTGGGGCAGGAAAGTGCATTCC TAGCCGGGCACTTGATTTGCATACGTATGTGACAATGGTGGGCATATCTT GCGCGCAATGAATGGATGCACAGCTAGATTTCGTTTTAACGAAGGTGCAT AGTTCAGGCGCAAAAAGAGAAGTCGAGCCCCAGCATGTGCCTTATACCGT ATACAATTTCTCTGCTGTCAAGGTGTCCCCGATACTCTCTCGTCCGCTCT GTCACCCGATATCTGCTCCACTTGTGCACGTCGCGAAAATCCACCATTCG CAGGTGAAACCCCTCAAAATATTATGGGACAAACATCCTCACTGGACTGA GAAGAACACGCTTCACGTGGATGACCTTGCAAGGAACTTCGCGCTTAATC CCAAGTAAGAAGTGCGGTGCCTCCGAACGTTGCTCTGCGGAGAATAGGGC GCAAAGTGTGGGCATCCCACGATCCGGTACATGAGAAAAATACTGTTGGC GGTGCTGAGCATGCCCACGTTTTTTCTGTGTTGCTCCTCGCTGCGGTCTC GCTCCTCTAGCCGCTGGATTCCCCCCAAGTTGCACCCAGTGGCAACAGGT CTGTTCCATGCGCGGGGTTATCTGGCCATTTTCGTGGAGAATTCTGCCCA CGCTCACGTACATCATTTATAGAGTCATGCTCCTCTCAGCCCGAGCTAGA AATTTCCTCGAGAACATGTTGCCGGAATTCTCCAGCACGAGCGAGTTTCG GGACGATGTCAATTGTACTTGAAGCAGCGAACACTGATGCCTATAGAACA GAAAATATTGGATAAAAATCCGCAAAGTTCCGATCCCTCAATTTCCACCC AAATTTGCAACAAAATGAGAGCGAAATCACGAGACGAAATGGTGATTTTT ATCAGCTGTGAAAAATAAGTATTTGCAAAACTGCCGGCCTATAGTGGGTG CGCAACCCTCCACCCTTCAGTGAATTCGCTCTCTTTCTCTGCCACTAATC TTGTACCCTCATACATTACCAGGTGCGGTGTAAAGGTTAAAGCTTTCAAG AGAAAAAGCAGCAGCGCATCGGCAGACGACGAACTCATGCTCCTTGCCCG CTACCTTTGTCTGGTGGCCAAGCGAGAACAGGGCTGGGAAGGACTGGACC ACATGGACTGGAAGAGCGAGCTCAGAAGGCTGGGATGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig15330:4454..6041-

>mRNA_H-paniculata_contig15330.3127.1 ID=mRNA_H-paniculata_contig15330.3127.1|Name=mRNA_H-paniculata_contig15330.3127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig15330:4454..6041- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTGGAGTTACGAGTACGCTCAAGGGCGGAGAGCAACGCCATCACCA
GATGTTTGGAGTTACGAGTACGCTCAAGGGCGGAGAGCAACGCCATCACC
AGGTGAAACCCCTCAAAATATTATGGGACAAACATCCTCACTGGACTGAG
AAGAACACGCTTCACGTGGATGACCTTGCAAGGAACTTCGCGCTTAATCC
CAAGTGAAACCCCTCAAAATATTATGGGACAAACATCCTCACTGGACTGA
GAAGAACACGCTTCACGTGGATGACCTTGCAAGGAACTTCGCGCTTAATC
CCAAGTGCGGTGTAAAGGTTAAAGCTTTCAAGAGAAAAAGCAGCAGCGCA
TCGGCAGACGACGAACTCATGCTCCTTGCCCGCTACCTTTGTCTGGTGGC
CAAGCGAGAACAGGGCTGGGAAGGACTGGACCACATGGACTGGAAGAGCG
AGCTCAGAAGGCTGGGATGAGTGCGGTGTAAAGGTTAAAGCTTTCAAGAG
AAAAAGCAGCAGCGCATCGGCAGACGACGAACTCATGCTCCTTGCCCGCT
ACCTTTGTCTGGTGGCCAAGCGAGAACAGGGCTGGGAAGGACTGGACCAC
ATGGACTGGAAGAGCGAGCTCAGAAGGCTGGGATGA
back to top