mRNA_H-paniculata_contig15329.3125.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig15329.3125.1 vs. uniprot
Match: A0A6D2J0E6_9BRAS (Uncharacterized protein n=3 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J0E6_9BRAS) HSP 1 Score: 82.4 bits (202), Expect = 4.300e-16 Identity = 40/105 (38.10%), Postives = 68/105 (64.76%), Query Frame = 1 Query: 7 ELQRSSTDPCLYFSRDERGETYILVAVYGDDLVIAGHR-GKVDEFKHNLSRRFRTKDLGFLSRVLGIEVLGDRPNGTISISQGGYIREVLKIYSFGEYRGVLTPV 318 + RS DPC+Y ++ E +I + +Y DD+++A +V++ K LSR F KDLG SR+LGI++ +R GT+ +SQ GY+++V++ ++ GE + V TP+ Sbjct: 1009 KFTRSGHDPCVYV-KEVGDEEFIYLLLYVDDMLLAAKSITEVNKLKAELSREFEMKDLGAASRILGIDITRNRKEGTLCLSQSGYLKKVIQRFNMGEAKVVSTPI 1112
BLAST of mRNA_H-paniculata_contig15329.3125.1 vs. uniprot
Match: A0A0V0WR72_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trichinella sp. T6 TaxID=92179 RepID=A0A0V0WR72_9BILA) HSP 1 Score: 80.5 bits (197), Expect = 1.830e-15 Identity = 43/105 (40.95%), Postives = 62/105 (59.05%), Query Frame = 1 Query: 10 LQRSSTDPCLYFSRDERGETYILVAVYGDDLVI-AGHRGKVDEFKHNLSRRFRTKDLGFLSRVLGIEVLGDRPNGTISISQGGYIREVLKIYSFGEYRGVLTPVE 321 L R +PC+YF R + ET++ V VY DDL+I + + +E K L RF+ KDLG LGI ++ D NGT+SI Q YI E+L + + +GV TP++ Sbjct: 179 LNRLKNEPCIYFLR--KNETFLAVGVYVDDLLILSNNESSKNELKMALCERFKMKDLGKAHWCLGIRIVQDVENGTLSIDQERYIEELLHRFRMSDCKGVKTPLD 281
BLAST of mRNA_H-paniculata_contig15329.3125.1 vs. uniprot
Match: A0A0V0W0C4_9BILA (26S protease regulatory subunit 8 n=2 Tax=Trichinella sp. T6 TaxID=92179 RepID=A0A0V0W0C4_9BILA) HSP 1 Score: 79.7 bits (195), Expect = 3.760e-15 Identity = 43/105 (40.95%), Postives = 62/105 (59.05%), Query Frame = 1 Query: 10 LQRSSTDPCLYFSRDERGETYILVAVYGDDLVI-AGHRGKVDEFKHNLSRRFRTKDLGFLSRVLGIEVLGDRPNGTISISQGGYIREVLKIYSFGEYRGVLTPVE 321 L R +PC+YF R + ET++ V VY DDL+I + + +E K L RFR +DLG LGI ++ D NGT+SI Q YI E+L + + +GV TP++ Sbjct: 374 LNRLKNEPCIYFLR--KNETFLAVGVYVDDLLILSNNESSKNELKMALCERFRMEDLGRAHWCLGIRIVQDVENGTLSIDQEQYIEEMLYRFRMSDCKGVKTPLD 476
BLAST of mRNA_H-paniculata_contig15329.3125.1 vs. uniprot
Match: A0A0V1NVJ2_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=4 Tax=Trichinella TaxID=6333 RepID=A0A0V1NVJ2_9BILA) HSP 1 Score: 77.0 bits (188), Expect = 5.100e-15 Identity = 41/104 (39.42%), Postives = 60/104 (57.69%), Query Frame = 1 Query: 10 LQRSSTDPCLYFSRDERGETYILVAVYGDDLVIAGHRGKVDEFKHNLSRRFRTKDLGFLSRVLGIEVLGDRPNGTISISQGGYIREVLKIYSFGEYRGVLTPVE 321 L R +PC+YF R + E ++ V VY DDL ++ + +E K L RF+ KDLG LGI ++ D NGT+SI Q YI E+L + + +GV TP++ Sbjct: 44 LNRLKNEPCIYFLR--KNEIFLAVGVYVDDL-LSNNESSKNELKMALCERFKMKDLGRAHWCLGIRIVQDVENGTLSIDQEQYIEEMLHRFRMSDCKGVKTPLD 144
BLAST of mRNA_H-paniculata_contig15329.3125.1 vs. uniprot
Match: A0A0V1FL71_TRIPS (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V1FL71_TRIPS) HSP 1 Score: 79.0 bits (193), Expect = 6.920e-15 Identity = 42/105 (40.00%), Postives = 62/105 (59.05%), Query Frame = 1 Query: 10 LQRSSTDPCLYFSRDERGETYILVAVYGDDLVI-AGHRGKVDEFKHNLSRRFRTKDLGFLSRVLGIEVLGDRPNGTISISQGGYIREVLKIYSFGEYRGVLTPVE 321 L R +PC+YF R + +T++ V VY DDL+I + + +E K L RF+ KDLG LGI ++ D NGT+SI Q YI E+L + + +GV TP++ Sbjct: 548 LNRLKNEPCIYFLR--KNKTFLAVGVYVDDLLILSNNESSKNELKMALCERFKMKDLGKAHWCLGIRIVQDVENGTLSIDQEQYIEEMLHRFRMSDCKGVKTPLD 650
BLAST of mRNA_H-paniculata_contig15329.3125.1 vs. uniprot
Match: A0A0V1APU2_TRISP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Trichinella spiralis TaxID=6334 RepID=A0A0V1APU2_TRISP) HSP 1 Score: 79.0 bits (193), Expect = 7.030e-15 Identity = 42/105 (40.00%), Postives = 62/105 (59.05%), Query Frame = 1 Query: 10 LQRSSTDPCLYFSRDERGETYILVAVYGDDLVI-AGHRGKVDEFKHNLSRRFRTKDLGFLSRVLGIEVLGDRPNGTISISQGGYIREVLKIYSFGEYRGVLTPVE 321 L R +PC+YF R + +T++ V VY DDL+I + + +E K L RF+ KDLG LGI ++ D NGT+SI Q YI E+L + + +GV TP++ Sbjct: 888 LNRLKNEPCIYFLR--KNKTFLAVGVYVDDLLILSNNESSKNELKMALCERFKMKDLGKAHWCLGIRIVQDVENGTLSIDQEQYIEEMLHRFRMSDCKGVKTPLD 990
BLAST of mRNA_H-paniculata_contig15329.3125.1 vs. uniprot
Match: A0A0V0UXA3_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Trichinella TaxID=6333 RepID=A0A0V0UXA3_9BILA) HSP 1 Score: 78.2 bits (191), Expect = 8.330e-15 Identity = 42/105 (40.00%), Postives = 61/105 (58.10%), Query Frame = 1 Query: 10 LQRSSTDPCLYFSRDERGETYILVAVYGDDLVI-AGHRGKVDEFKHNLSRRFRTKDLGFLSRVLGIEVLGDRPNGTISISQGGYIREVLKIYSFGEYRGVLTPVE 321 L R +PC+YF R + E ++ V VY DDL+I + + +E K L RF+ KDLG LGI ++ D NGT+SI Q YI E+L + + +GV TP++ Sbjct: 44 LNRLKNEPCIYFLR--KNEIFLAVGVYVDDLLILSNNESSKNELKMALCERFKMKDLGKAHWCLGIRIVQDVENGTLSIDQERYIEELLHRFRMSDCKGVKTPLD 146
BLAST of mRNA_H-paniculata_contig15329.3125.1 vs. uniprot
Match: A0A0V1C4L5_TRIBR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trichinella britovi TaxID=45882 RepID=A0A0V1C4L5_TRIBR) HSP 1 Score: 74.7 bits (182), Expect = 3.930e-14 Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 1 Query: 10 LQRSSTDPCLYFSRDERGETYILVAVYGDDLVIAGHRGKVDEFKHNLSRRFRTKDLGFLSRVLGIEVLGDRPNGTISISQGGYIREVLKIYSFGEYRGVLTPVE 321 L R +PC+YF R + E ++ V VY DDL ++ + +E K L RF+ KDL LGI ++ D NGT+SI Q YI E+L + + +GV TP++ Sbjct: 114 LNRLKNEPCIYFLR--KNEIFLAVGVYVDDL-LSNNESSKNELKMALCERFKMKDLNRAHWCLGIRIVQDVENGTLSIDQEQYIEEMLHRFRMSDCKGVKTPLD 214
BLAST of mRNA_H-paniculata_contig15329.3125.1 vs. uniprot
Match: Q9SJT2_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SJT2_ARATH) HSP 1 Score: 75.9 bits (185), Expect = 8.500e-14 Identity = 37/105 (35.24%), Postives = 58/105 (55.24%), Query Frame = 1 Query: 4 IELQRSSTDPCLYFSRDERGETYILVAVYGDDLVIAGHRGKVDEFKHNLSRRFRTKDLGFLSRVLGIEVLGDRPNGTISISQGGYIREVLKIYSFGEYRGVLTPV 318 I RS D C Y G L+ D LV A ++ + + K LS+RF KDLG R+LG+E++ +R T+ +SQ GY+ ++L+ Y+ E + V+TP+ Sbjct: 985 IGFIRSLYDSCAYIKELSDGSRVYLLLYVDDMLVAAKNKEDISQLKEELSQRFDMKDLGAAKRILGMEIIRNREENTLWLSQNGYLNKILETYNMAESKHVVTPL 1089
BLAST of mRNA_H-paniculata_contig15329.3125.1 vs. uniprot
Match: A0A0V1AJ61_TRIBR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trichinella britovi TaxID=45882 RepID=A0A0V1AJ61_TRIBR) HSP 1 Score: 71.6 bits (174), Expect = 9.980e-14 Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 1 Query: 10 LQRSSTDPCLYFSRDERGETYILVAVYGDDLVIAGHRGKVDEFKHNLSRRFRTKDLGFLSRVLGIEVLGDRPNGTISISQGGYIREVLKIYSFGEYRGVLTPVE 321 L R +PC+YF R + E ++ V VY DDL ++ + +E K L RF+ KDLG LGI ++ D NGT+SI Q I E+L + + +GV TP++ Sbjct: 11 LNRLKNEPCIYFLR--KNEIFLAVGVYVDDL-LSNNVSLKNELKMALCERFKMKDLGRAHWCLGIRIVQDVENGTLSIDQEQCIEEMLHRFRMSDCKGVKTPLD 111 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15329.3125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig15329.3125.1 >prot_H-paniculata_contig15329.3125.1 ID=prot_H-paniculata_contig15329.3125.1|Name=mRNA_H-paniculata_contig15329.3125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp GIELQRSSTDPCLYFSRDERGETYILVAVYGDDLVIAGHRGKVDEFKHNLback to top mRNA from alignment at H-paniculata_contig15329:5715..6035- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig15329.3125.1 ID=mRNA_H-paniculata_contig15329.3125.1|Name=mRNA_H-paniculata_contig15329.3125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=321bp|location=Sequence derived from alignment at H-paniculata_contig15329:5715..6035- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig15329:5715..6035- >mRNA_H-paniculata_contig15329.3125.1 ID=mRNA_H-paniculata_contig15329.3125.1|Name=mRNA_H-paniculata_contig15329.3125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig15329:5715..6035- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |