mRNA_H-paniculata_contig15232.3084.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15232.3084.1
Unique NamemRNA_H-paniculata_contig15232.3084.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15232.3084.1 vs. uniprot
Match: D7G275_ECTSI (Phosphatidate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G275_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.240e-16
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = 1
Query:    4 DVSTLFTKISANGYKILYLTSRPLGDWHSKKGLG---EGG-RLPRGPVLVSPEALFR 162
            DVSTLF+KIS NGYKILYLT+RPL DWH+K+G     EGG  LPRGPVL  PE LFR
Sbjct: 1196 DVSTLFSKISGNGYKILYLTNRPLPDWHAKRGAAAAAEGGVALPRGPVLCPPEVLFR 1252          
BLAST of mRNA_H-paniculata_contig15232.3084.1 vs. uniprot
Match: A0A6H5JPH1_9PHAE (LNS2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH1_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.240e-16
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = 1
Query:    4 DVSTLFTKISANGYKILYLTSRPLGDWHSKKGLG---EGG-RLPRGPVLVSPEALFR 162
            DVSTLF+KIS NGYKILYLT+RPL DWH+K+G     EGG  LPRGPVL  PE LFR
Sbjct: 1456 DVSTLFSKISGNGYKILYLTNRPLPDWHAKRGAAAAAEGGVALPRGPVLCPPEVLFR 1512          
BLAST of mRNA_H-paniculata_contig15232.3084.1 vs. uniprot
Match: M1K8X5_ENCCN (LNS2 domain-containing protein n=1 Tax=Encephalitozoon cuniculi TaxID=6035 RepID=M1K8X5_ENCCN)

HSP 1 Score: 57.8 bits (138), Expect = 2.320e-8
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    7 VSTLFTKISANGYKILYLTSRPLGDWHSKKGL-----GEGGRLPRGPVLVSPEALF 159
            V++L+TKI+ NGYKI+YLT+RPLG   S K        +G +LP GPV++SP+ +F
Sbjct:  419 VASLYTKIARNGYKIVYLTARPLGQSFSTKSYLKNVCQDGYKLPDGPVILSPDGVF 474          
BLAST of mRNA_H-paniculata_contig15232.3084.1 vs. uniprot
Match: Q8SWG3_ENCCU (Similarity to yeast gene INVOLVED IN PLASMID MAINTENACE n=4 Tax=Encephalitozoon TaxID=6033 RepID=Q8SWG3_ENCCU)

HSP 1 Score: 56.6 bits (135), Expect = 5.920e-8
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    7 VSTLFTKISANGYKILYLTSRPLGDWHSKKGL-----GEGGRLPRGPVLVSPEALF 159
            V++L+TKI  NGYKI+YLT+RPLG   S K        +G +LP GPV++SP+ +F
Sbjct:  419 VASLYTKIVRNGYKIVYLTARPLGQSFSTKSYLKNVCQDGYKLPDGPVILSPDGVF 474          
BLAST of mRNA_H-paniculata_contig15232.3084.1 vs. uniprot
Match: A0A0B2UMS3_9MICR (Smp2-like plasmid maintenance protein n=1 Tax=Ordospora colligata OC4 TaxID=1354746 RepID=A0A0B2UMS3_9MICR)

HSP 1 Score: 54.7 bits (130), Expect = 2.830e-7
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 1
Query:    7 VSTLFTKISANGYKILYLTSRPLGDWHSKKGL-----GEGGRLPRGPVLVSPEALF 159
            V++L+TKI  NGYKI+YLT+RPL    S K        +G RLP GPV++SP+ +F
Sbjct:  421 VASLYTKIVKNGYKIVYLTARPLEQSSSTKSYLKSICQDGCRLPDGPVILSPDGVF 476          
BLAST of mRNA_H-paniculata_contig15232.3084.1 vs. uniprot
Match: A0A165QXB0_EXIGL (Phosphatidate phosphatase n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165QXB0_EXIGL)

HSP 1 Score: 54.3 bits (129), Expect = 3.900e-7
Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    1 TDVSTLFTKISANGYKILYLTSRPLGDW----HSKKGLGEGG-RLPRGPVLVSPEALF 159
            T V+ L+T I  NGYKILYLTSR +G      H  KG+ +   +LP GPV++SP+ LF
Sbjct:  687 TGVAKLYTDICRNGYKILYLTSRAIGQAGSTRHYLKGINQDNYQLPEGPVIMSPDRLF 744          
BLAST of mRNA_H-paniculata_contig15232.3084.1 vs. uniprot
Match: R0MRQ2_NOSB1 (Nuclear elongation and deformation protein 1 n=3 Tax=Opisthokonta TaxID=33154 RepID=R0MRQ2_NOSB1)

HSP 1 Score: 53.9 bits (128), Expect = 5.300e-7
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    7 VSTLFTKISANGYKILYLTSRPLGDWHSKKGL-----GEGGRLPRGPVLVSPEALF 159
            +++LFTKI  +GYKILYLT+RPL    + K        +G  LP GPVL+SP+ +F
Sbjct:  418 IASLFTKIKKHGYKILYLTARPLQQSFATKNYLRRVNQDGYNLPEGPVLLSPDGVF 473          
BLAST of mRNA_H-paniculata_contig15232.3084.1 vs. uniprot
Match: J8ZUA9_EDHAE (LNS2 domain-containing protein n=1 Tax=Edhazardia aedis (strain USNM 41457) TaxID=1003232 RepID=J8ZUA9_EDHAE)

HSP 1 Score: 53.5 bits (127), Expect = 7.260e-7
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1
Query:    7 VSTLFTKISANGYKILYLTSRPLGDW-HSKKGLG----EGGRLPRGPVLVSPEALF 159
            V+ LFTKI  N YKI+YL+SRP+G   ++KK L      G  LP GPVL+SP+ LF
Sbjct:  479 VAGLFTKIVKNDYKIVYLSSRPIGQMEYTKKYLSGIKQNGCELPDGPVLLSPDGLF 534          
BLAST of mRNA_H-paniculata_contig15232.3084.1 vs. uniprot
Match: A0A6A6NTF9_9PEZI (Lipin/Ned1/Smp2-domain-containing protein n=1 Tax=Lineolata rhizophorae TaxID=578093 RepID=A0A6A6NTF9_9PEZI)

HSP 1 Score: 53.1 bits (126), Expect = 9.970e-7
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    7 VSTLFTKISANGYKILYLTSRPLGDWHSKKG-----LGEGGRLPRGPVLVSPE 150
            V+ L+T I+ANGY ILYLTSR +G   + +      L +G RLPRGPV++SP+
Sbjct:  531 VAKLYTDIAANGYNILYLTSRSVGQADTTRAYLNGVLQDGYRLPRGPVIMSPD 583          
BLAST of mRNA_H-paniculata_contig15232.3084.1 vs. uniprot
Match: A0A0C3EBD0_9AGAM (LNS2 domain-containing protein (Fragment) n=1 Tax=Scleroderma citrinum Foug A TaxID=1036808 RepID=A0A0C3EBD0_9AGAM)

HSP 1 Score: 52.8 bits (125), Expect = 1.140e-6
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    7 VSTLFTKISANGYKILYLTSRPLGDWHSK----KGLGEGG-RLPRGPVLVSPEAL 156
            V+ L+T I+ NGYKI+YLTSR +G   S     KG+ + G RLP GPV++SP+ L
Sbjct:  122 VAKLYTDIARNGYKIMYLTSRAIGQADSTREYLKGIKQNGYRLPEGPVIMSPDRL 176          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15232.3084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G275_ECTSI1.240e-1671.93Phosphatidate phosphatase n=1 Tax=Ectocarpus silic... [more]
A0A6H5JPH1_9PHAE1.240e-1671.93LNS2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
M1K8X5_ENCCN2.320e-850.00LNS2 domain-containing protein n=1 Tax=Encephalito... [more]
Q8SWG3_ENCCU5.920e-850.00Similarity to yeast gene INVOLVED IN PLASMID MAINT... [more]
A0A0B2UMS3_9MICR2.830e-750.00Smp2-like plasmid maintenance protein n=1 Tax=Ordo... [more]
A0A165QXB0_EXIGL3.900e-750.00Phosphatidate phosphatase n=1 Tax=Exidia glandulos... [more]
R0MRQ2_NOSB15.300e-748.21Nuclear elongation and deformation protein 1 n=3 T... [more]
J8ZUA9_EDHAE7.260e-753.57LNS2 domain-containing protein n=1 Tax=Edhazardia ... [more]
A0A6A6NTF9_9PEZI9.970e-750.94Lipin/Ned1/Smp2-domain-containing protein n=1 Tax=... [more]
A0A0C3EBD0_9AGAM1.140e-650.91LNS2 domain-containing protein (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15232contigH-paniculata_contig15232:6066..6227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue9.2e-14
Seed eggNOG ortholog2880.D7G275
KEGG rclassRC00017
KEGG koko:K15728
KEGG ReactionR02239
KEGG Pathwayko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.phosphatidylinositol transporter activity
EggNOG OGsCOG5083@1,KOG2116@2759
EC3.1.3.4
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929220.9095755-CDS-H-paniculata_contig15232:6065..62271622929220.9095755-CDS-H-paniculata_contig15232:6065..6227Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15232 6066..6227 +
1691480775.7725775-CDS-H-paniculata_contig15232:6065..62271691480775.7725775-CDS-H-paniculata_contig15232:6065..6227Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15232 6066..6227 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15232.3084.1prot_H-paniculata_contig15232.3084.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15232 6066..6227 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15232.3084.1

>prot_H-paniculata_contig15232.3084.1 ID=prot_H-paniculata_contig15232.3084.1|Name=mRNA_H-paniculata_contig15232.3084.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
TDVSTLFTKISANGYKILYLTSRPLGDWHSKKGLGEGGRLPRGPVLVSPE
ALFR
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mRNA from alignment at H-paniculata_contig15232:6066..6227+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15232.3084.1 ID=mRNA_H-paniculata_contig15232.3084.1|Name=mRNA_H-paniculata_contig15232.3084.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at H-paniculata_contig15232:6066..6227+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGATGTGTCAACATTGTTCACGAAGATTTCGGCGAACGGGTACAAGAT TCTCTATCTTACCTCCCGACCGTTGGGAGACTGGCACTCGAAGAAGGGCC TCGGAGAAGGGGGAAGACTTCCCCGAGGACCTGTGCTGGTCTCACCTGAG GCGCTGTTTCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig15232:6066..6227+

>mRNA_H-paniculata_contig15232.3084.1 ID=mRNA_H-paniculata_contig15232.3084.1|Name=mRNA_H-paniculata_contig15232.3084.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig15232:6066..6227+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGATGTGTCAACATTGTTCACGAAGATTTCGGCGAACGGGTACAAGAT
TCTCTATCTTACCTCCCGACCGTTGGGAGACTGGCACTCGAAGAAGGGCC
TCGGAGAAGGGGGAAGACTTCCCCGAGGACCTGTGCTGGTCTCACCTGAG
GCGCTGTTTCGCACAGATGTGTCAACATTGTTCACGAAGATTTCGGCGAA
CGGGTACAAGATTCTCTATCTTACCTCCCGACCGTTGGGAGACTGGCACT
CGAAGAAGGGCCTCGGAGAAGGGGGAAGACTTCCCCGAGGACCTGTGCTG
GTCTCACCTGAGGCGCTGTTTCGC
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