mRNA_H-paniculata_contig1523.3075.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1523.3075.1
Unique NamemRNA_H-paniculata_contig1523.3075.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1523.3075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1523contigH-paniculata_contig1523:21196..21394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size200
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929220.0599422-CDS-H-paniculata_contig1523:21195..213721622929220.0599422-CDS-H-paniculata_contig1523:21195..21372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1523 21196..21372 +
1691480775.6169543-CDS-H-paniculata_contig1523:21195..213721691480775.6169543-CDS-H-paniculata_contig1523:21195..21372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1523 21196..21372 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929220.0778613-UTR-H-paniculata_contig1523:21372..213941622929220.0778613-UTR-H-paniculata_contig1523:21372..21394Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1523 21373..21394 +
1691480775.6274805-UTR-H-paniculata_contig1523:21372..213941691480775.6274805-UTR-H-paniculata_contig1523:21372..21394Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1523 21373..21394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1523.3075.1prot_H-paniculata_contig1523.3075.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1523 21196..21372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1523.3075.1

>prot_H-paniculata_contig1523.3075.1 ID=prot_H-paniculata_contig1523.3075.1|Name=mRNA_H-paniculata_contig1523.3075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
IVERCELVEQCPSEAGRIALRTLHILDSLECVLGRVFVQRRSRDQLDQAG
SGRTGAFQ*
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mRNA from alignment at H-paniculata_contig1523:21196..21394+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1523.3075.1 ID=mRNA_H-paniculata_contig1523.3075.1|Name=mRNA_H-paniculata_contig1523.3075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=199bp|location=Sequence derived from alignment at H-paniculata_contig1523:21196..21394+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGTTGAGCGGTGCGAATTGGTTGAGCAGTGCCCTTCCGAGGCGGGCCG CATTGCTCTGCGAACACTCCACATACTCGACTCCTTGGAGTGCGTTTTGG GGAGGGTTTTCGTCCAACGCAGGTCTCGCGACCAGCTAGATCAAGCTGGT TCTGGTCGAACCGGCGCATTTCAATAACCACGCTAAGAAGTATGTTATC
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Coding sequence (CDS) from alignment at H-paniculata_contig1523:21196..21394+

>mRNA_H-paniculata_contig1523.3075.1 ID=mRNA_H-paniculata_contig1523.3075.1|Name=mRNA_H-paniculata_contig1523.3075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig1523:21196..21394+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGTTGAGCGGTGCGAATTGGTTGAGCAGTGCCCTTCCGAGGCGGGCCG
CATTGCTCTGCGAACACTCCACATACTCGACTCCTTGGAGTGCGTTTTGG
GGAGGGTTTTCGTCCAACGCAGGTCTCGCGACCAGCTAGATCAAGCTGGT
TCTGGTCGAACCGGCGCATTTCAATAAATTGTTGAGCGGTGCGAATTGGT
TGAGCAGTGCCCTTCCGAGGCGGGCCGCATTGCTCTGCGAACACTCCACA
TACTCGACTCCTTGGAGTGCGTTTTGGGGAGGGTTTTCGTCCAACGCAGG
TCTCGCGACCAGCTAGATCAAGCTGGTTCTGGTCGAACCGGCGCATTTCA
ATAA
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