mRNA_H-paniculata_contig1523.3074.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig1523.3074.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE) HSP 1 Score: 155 bits (393), Expect = 1.460e-40 Identity = 92/247 (37.25%), Postives = 130/247 (52.63%), Query Frame = 1 Query: 1 AIYSLVQAGRYWNMKLTDDLKTLGFEQSHVDPCVFRTFLTGELVAIFVVHVDDLLALTTTKEIVKAIVGDLRSKCTIKDLGEVSYYTGCHITRNREKEELKFDQYFYAQTITNRFEINTTVMVPATGGVKSLSKEDGPQIPEEKEEMRGIPYREAVGVLTWASTMSWPDLSSAVGTEANFCEDPSMVHWKAVVMVLQYVRRSQGMGITYNGDRNGGTEVQASADSDHATCPDTRRSISGGKFFWAGG 741 ++Y L QA R+W+ LT L LGF Q D CVFR G ++ I VVHVDD+ A+ KE DL +K+LGE+ +Y+ C R+ E+ L+ Q +A+ + + I VP VK +E E +P+RE VG L W +T + PD+++AV A +C P MVHWKA + +L YVRR+ MGIT+ G +Q D+D+A+ RRS+SGG GG Sbjct: 12 SLYGLKQASRHWHAHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQ-KERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVKLTDF-------DENEASADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGG 250
BLAST of mRNA_H-paniculata_contig1523.3074.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE) HSP 1 Score: 155 bits (393), Expect = 5.080e-40 Identity = 92/247 (37.25%), Postives = 130/247 (52.63%), Query Frame = 1 Query: 1 AIYSLVQAGRYWNMKLTDDLKTLGFEQSHVDPCVFRTFLTGELVAIFVVHVDDLLALTTTKEIVKAIVGDLRSKCTIKDLGEVSYYTGCHITRNREKEELKFDQYFYAQTITNRFEINTTVMVPATGGVKSLSKEDGPQIPEEKEEMRGIPYREAVGVLTWASTMSWPDLSSAVGTEANFCEDPSMVHWKAVVMVLQYVRRSQGMGITYNGDRNGGTEVQASADSDHATCPDTRRSISGGKFFWAGG 741 ++Y L QA R+W+ LT L LGF Q D CVFR G ++ I VVHVDD+ A+ KE DL +K+LGE+ +Y+ C R+ E+ L+ Q +A+ + + I VP VK +E E +P+RE VG L W +T + PD+++AV A +C P MVHWKA + +L YVRR+ MGIT+ G +Q D+D+A+ RRS+SGG GG Sbjct: 74 SLYGLKQASRHWHSHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQ-KERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVKLTDF-------DENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGG 312
BLAST of mRNA_H-paniculata_contig1523.3074.1 vs. uniprot
Match: A0A6H5KGB0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB0_9PHAE) HSP 1 Score: 152 bits (384), Expect = 7.200e-39 Identity = 90/247 (36.44%), Postives = 130/247 (52.63%), Query Frame = 1 Query: 1 AIYSLVQAGRYWNMKLTDDLKTLGFEQSHVDPCVFRTFLTGELVAIFVVHVDDLLALTTTKEIVKAIVGDLRSKCTIKDLGEVSYYTGCHITRNREKEELKFDQYFYAQTITNRFEINTTVMVPATGGVKSLSKEDGPQIPEEKEEMRGIPYREAVGVLTWASTMSWPDLSSAVGTEANFCEDPSMVHWKAVVMVLQYVRRSQGMGITYNGDRNGGTEVQASADSDHATCPDTRRSISGGKFFWAGG 741 ++Y L QA R W+ LT L LGF Q D CVFR G ++ I VVHVDD+ A+ KE +L +K+LGE+ +Y+ C R+ E+ L+ Q +A+ + + + VP VK +E E +P+RE VG L W +T + PD+++AV A +C P+MVHWKA + +L YVRR+ MGIT+ G +Q D+D+A+ RRS+SGG GG Sbjct: 160 SLYGLKQASRQWHAHLTRCLLLLGFVQCLADACVFRLMEDGCVIMIIVVHVDDIFAVGQ-KERCDKFGSELNEMVPVKNLGELRWYSACFYQRDLERGLLRISQQRFAEELAAEYGVEWGKSVPLPVSVKLTDF-------DENEACADVPFRELVGSLMWLTTRTRPDIANAVRPVARYCASPTMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGG 398
BLAST of mRNA_H-paniculata_contig1523.3074.1 vs. uniprot
Match: A0A6H5JU31_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU31_9PHAE) HSP 1 Score: 154 bits (389), Expect = 9.630e-38 Identity = 92/247 (37.25%), Postives = 130/247 (52.63%), Query Frame = 1 Query: 1 AIYSLVQAGRYWNMKLTDDLKTLGFEQSHVDPCVFRTFLTGELVAIFVVHVDDLLALTTTKEIVKAIVGDLRSKCTIKDLGEVSYYTGCHITRNREKEELKFDQYFYAQTITNRFEINTTVMVPATGGVKSLSKEDGPQIPEEKEEMRGIPYREAVGVLTWASTMSWPDLSSAVGTEANFCEDPSMVHWKAVVMVLQYVRRSQGMGITYNGDRNGGTEVQASADSDHATCPDTRRSISGGKFFWAGG 741 ++Y L QA R+W+ LT L LGF Q D CVFR G ++ I VVHVDD+ A+ KE DL +K+LGE+ +Y+ C R+ E+ L+ Q +A+ + + I VP VK +E E +P+RE VG L W +T + PD+++AV A +C P MVHWKA + +L YVRR+ MGIT+ G +Q D+D+A+ RRS+SGG GG Sbjct: 984 SLYGLKQASRHWHSHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQ-KERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVKLTDF-------DENEACADVPFRELVGSLMWLATQTRPDIANAVRAVAWYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGG 1222
BLAST of mRNA_H-paniculata_contig1523.3074.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE) HSP 1 Score: 152 bits (385), Expect = 3.370e-37 Identity = 90/247 (36.44%), Postives = 129/247 (52.23%), Query Frame = 1 Query: 1 AIYSLVQAGRYWNMKLTDDLKTLGFEQSHVDPCVFRTFLTGELVAIFVVHVDDLLALTTTKEIVKAIVGDLRSKCTIKDLGEVSYYTGCHITRNREKEELKFDQYFYAQTITNRFEINTTVMVPATGGVKSLSKEDGPQIPEEKEEMRGIPYREAVGVLTWASTMSWPDLSSAVGTEANFCEDPSMVHWKAVVMVLQYVRRSQGMGITYNGDRNGGTEVQASADSDHATCPDTRRSISGGKFFWAGG 741 ++Y L QA R W+ LT L LGF + D CVFR G ++ I VVHVDD+ A+ KE DL +K+LGE+ +Y+ C R+ E+ L+ Q +A+ + + + VP VK +E E +P+RE VG L W +T + PD+++AV A +C P MVHWKA + +L YVRR+ MGIT+ G +Q D+D+A+ RRS+SGG GG Sbjct: 1108 SLYGLKQASRQWHAHLTRCLLLLGFVRCLADACVFRLMEDGCVIMIIVVHVDDIFAVGQ-KERCDKFGSDLNEMVPVKNLGELRWYSACFYQRDLERGLLRISQQRFAEELAAEYGVEWGKSVPLPVSVKLTDF-------DENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGG 1346
BLAST of mRNA_H-paniculata_contig1523.3074.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE) HSP 1 Score: 140 bits (354), Expect = 8.060e-35 Identity = 84/239 (35.15%), Postives = 122/239 (51.05%), Query Frame = 1 Query: 1 AIYSLVQAGRYWNMKLTDDLKTLGFEQSHVDPCVFRTFLTGELVAIFVVHVDDLLALTTTKEIVKAIVGDLRSKCTIKDLGEVSYYTGCHITRNREKEELKFDQYFYAQTITNRFEINTTVMVPATGGVKSLSKEDGPQIPEEKEEMRGIPYREAVGVLTWASTMSWPDLSSAVGTEANFCEDPSMVHWKAVVMVLQYVRRSQGMGITYNGDRNGGTEVQASADSDHATCPDTRRSISG 717 ++Y L QA R +L DL +GFEQS DPCV R + E++ IF +HVDD+L TK + + IV L K+LGEV ++ GC I+R+RE ++ Q Y + + RF I T +PA+ S S E EE +P+RE VG L W + + P+ S+AV T A +P WKA +L Y++ + + + Y D D+D A+ RRS+SG Sbjct: 20 SLYGLKQASRTSYKRLVSDLLWIGFEQSLSDPCVLRFMMGDEVMGIFAIHVDDILY-AGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCEISRDREAGTIEISQESYIRNVLERFNICRTSSIPASPANDSRSV-------MEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSG 250
BLAST of mRNA_H-paniculata_contig1523.3074.1 vs. uniprot
Match: A0A6H5JKY9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKY9_9PHAE) HSP 1 Score: 145 bits (365), Expect = 1.460e-34 Identity = 87/247 (35.22%), Postives = 127/247 (51.42%), Query Frame = 1 Query: 1 AIYSLVQAGRYWNMKLTDDLKTLGFEQSHVDPCVFRTFLTGELVAIFVVHVDDLLALTTTKEIVKAIVGDLRSKCTIKDLGEVSYYTGCHITRNREKEELKFDQYFYAQTITNRFEINTTVMVPATGGVKSLSKEDGPQIPEEKEEMRGIPYREAVGVLTWASTMSWPDLSSAVGTEANFCEDPSMVHWKAVVMVLQYVRRSQGMGITYNGDRNGGTEVQASADSDHATCPDTRRSISGGKFFWAGG 741 ++Y L QA R+W+ LT L LGF Q D CVFR ++ I VV VDD+ A+ + DL +K+LGE+ +Y+ C R+ E+ L+ Q +A+ + + + VP VK +E E +P+RE VG L W +T + PD+++AV A +C P MVHWKA + +L YVRR+ MGIT+ G +Q D+D+A+ RRS+SGG GG Sbjct: 1055 SLYGLKQASRHWHAHLTRCLLLLGFVQCLADACVFRLMEDICVIMIIVVPVDDIFAVGQKR--CDKFGSDLNDMVPVKNLGELRWYSACFYQRDLERGLLRISQQRFAEELAAEYGVEWGKSVPLPVSVKLTDF-------DENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGISMQVFLDADYASKAADRRSVSGGLVMCGGG 1292
BLAST of mRNA_H-paniculata_contig1523.3074.1 vs. uniprot
Match: A0A182GPU0_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GPU0_AEDAL) HSP 1 Score: 143 bits (361), Expect = 3.410e-34 Identity = 86/248 (34.68%), Postives = 131/248 (52.82%), Query Frame = 1 Query: 1 AIYSLVQAGRYWNMKLTDDLKTLGFEQSHVDPCVFRTFLTGELVAIFVVHVDDLLALTTTKEIVKAIVGDLRSKCTIKDLGEVSYYTGCHITRNREKEELKFDQYFYAQTITNRFEINTT--VMVPATGGVKSLSKEDGPQIPEEKEEMRGIPYREAVGVLTWASTMSWPDLSSAVGTEANFCEDPSMVHWKAVVMVLQYVRRSQGMGITYNGDRNGGTEVQASADSDHATCPDTRRSISGGKFFWAG 738 A+Y L Q+ R WN KL L+ G ++S VD C++ + G+ + ++VDDLL T + + + L K +KDLGE ++ G I R+R + L DQ Y + + RF + V PA +K L K P+ EE EMR +P++EAVG L++ + + PD++ AV + F +P HW AV +++YV+ + + Y D NGG +Q +D+D PD RRS SG F G Sbjct: 397 ALYGLKQSSRVWNEKLDAVLRGFGLQRSLVDTCLYW-IIDGDKILFVTIYVDDLLIFTNNRALKMKLKQYLMEKFDMKDLGEATHCLGIRIARDRTEGRLSLDQEAYIEKVIQRFGMTDARPVATPADSSIK-LEKSMAPKTAEEAMEMRKVPFKEAVGCLSFVAQTTRPDIAYAVNAVSQFSANPGRQHWDAVKRIIRYVKGTSKKKLVYTKDENGG--LQGYSDADWGGDPDDRRSTSGYLFTMQG 640
BLAST of mRNA_H-paniculata_contig1523.3074.1 vs. uniprot
Match: W4VRQ4_9DIPT (Putative retrovirus-related pol polyprotein from transposon tnt n=1 Tax=Corethrella appendiculata TaxID=1370023 RepID=W4VRQ4_9DIPT) HSP 1 Score: 143 bits (360), Expect = 6.620e-34 Identity = 88/249 (35.34%), Postives = 131/249 (52.61%), Query Frame = 1 Query: 1 AIYSLVQAGRYWNMKLTDDLKTLGFEQSHVDPCVFRTFLTGELVAIFVVHVDDLLALTTTKEIVKAIVGDLRSKCTIKDLGEVSYYTGCHITRNREKEELKFDQYFYAQTITNRFEINTTV--MVPATGGVKSLSKEDGPQIPEEKEEMRGIPYREAVGVLTWASTMSWPDLSSAVGTEANFCEDPSMVHWKAVVMVLQYVRRSQGMGITYNGDRNGGTEVQASADSDHATCPDTRRSISGGKFFWAGG 741 A+Y L QA R WN KL + LK+LGF+QS D CV+ + G + I ++VDD++ + +K I L + +KD+G+ + G IT K + DQ Y + I N+F ++ P K LSK D P +P E E+M+ +PY+EA+G L + S + PD+S V + F +P HW AV + +Y+R + +TYN N +EV A D+D A+ D R+S SG GG Sbjct: 1027 ALYGLKQASRVWNRKLDEKLKSLGFQQSTYDTCVYFK-IEGNRILIIAIYVDDMMLFSNCLNWLKEIKEKLGREFRMKDMGKAKFCLGIKITET--KSCITLDQQHYIEEILNKFGMSECKPSYTPMQHNQK-LSKADSPNLPAEIEDMKQVPYQEAIGCLMYLSNCTRPDISFVVNKLSRFNNNPGTEHWAAVKHLFRYLRGTSSYNLTYNRGSNSASEVVAYCDADWASDLDDRKSTSGFVLLAQGG 1271
BLAST of mRNA_H-paniculata_contig1523.3074.1 vs. uniprot
Match: UPI001E1BA9BB (uncharacterized protein LOC116922675 n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BA9BB) HSP 1 Score: 137 bits (346), Expect = 1.830e-33 Identity = 93/251 (37.05%), Postives = 136/251 (54.18%), Query Frame = 1 Query: 1 AIYSLVQAGRYWNMKLTDDLKTLGFEQSHVDPCVFRTFLTGE-LVAIFVVHVDDLLALTTTKEIVKAIVGDLRSKCTIKDLGEVSYYTGCHITRNREKEELKFDQYFYAQTITNRFEIN--TTVMVPATGGVKSLSKEDGPQIPEEKEEMRGIPYREAVGVLTWASTMSWPDLSSAVGTEANFCEDPSMVHWKAVVMVLQYVRRSQGMGITYNGDRNGGTE-VQASADSDHATCPDTRRSISGGKFFWAGG 741 ++Y L QA R WN++L D + G +S D CV+ G ++AIF VDD L T ++ ++ V L++K ++ L + G I RNRE+ L Q TI +F++ +V PA G+K LS PQ +E EEM+ IPY+EAVG L + ST + PD+S AVG A F +P + HWKAV + +Y+ ++ GI ++ + +G E + D+DHA PD R S SG F GG Sbjct: 130 SLYGLKQAPRAWNIELNDAIVRYGLIRSDEDQCVYHLVEEGSWILAIF--FVDDGLICGTNEKTLEKFVDHLKTKFELRTL-PAGRFLGITIDRNRERRHLSISQPDAVDTILKKFKMGDCNSVSTPAEPGLK-LSLNMSPQTDKEVEEMKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWKAVKRIFRYLAGTREYGILFSPNPSGKEEEIVGFTDADHAGDPDDRSSTSGCVFICHGG 376 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1523.3074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1523.3074.1 >prot_H-paniculata_contig1523.3074.1 ID=prot_H-paniculata_contig1523.3074.1|Name=mRNA_H-paniculata_contig1523.3074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=331bp MKLTDDLKTLGFEQSHVDPCVFRTFLTGELVAIFVVHVDDLLALTTTKEIback to top mRNA from alignment at H-paniculata_contig1523:18286..19345- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1523.3074.1 ID=mRNA_H-paniculata_contig1523.3074.1|Name=mRNA_H-paniculata_contig1523.3074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1060bp|location=Sequence derived from alignment at H-paniculata_contig1523:18286..19345- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1523:18286..19345- >mRNA_H-paniculata_contig1523.3074.1 ID=mRNA_H-paniculata_contig1523.3074.1|Name=mRNA_H-paniculata_contig1523.3074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1986bp|location=Sequence derived from alignment at H-paniculata_contig1523:18286..19345- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |