mRNA_H-paniculata_contig1520.3064.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1520.3064.1 vs. uniprot
Match: A0A6H5JE26_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE26_9PHAE) HSP 1 Score: 526 bits (1355), Expect = 1.830e-162 Identity = 299/560 (53.39%), Postives = 379/560 (67.68%), Query Frame = 1
Query: 496 DKEDALAFWAHLQRHTGNRFASWPTFSAYFLTYMEKHYPGEAER--GRTAPSTEMVLRYAFDRGSPARAESIDASKAVYPTDLSLFLQRFGPMRSCLVKASRSLFDDEGCLERWFHGNMSRDDAAEAIRDWEVSRV--RRRHGVFLFRYTPNRAQIAFSYRRRTGEK-VQHSLISN-GAAGYYLPKNDQQRVWANLREFINAMDQY-FVHPVTSDLHEECSRELQ---EPQEMPEPPVDQIARARILFQNAQALTCG------GGAQTIRVLREALEMVTEVLSIIGGSEL--GAPQLEVKALRSEADILWQLEQREDGVKVYERYLELVAQVQEDQEATADGSSPVSRGALLYVHRLLAIYYLGERVPSRALYHFSELIACTTDEDPRRKRVEEFHQMEEFRNATARLTHGSVEEMLAEGITYFRREEYAPAAEKFEKALRDARCIGEGKLEARALGNVATVDFKTHRIPAAIRRYRTCVQLLRQLRDQVTERKILNYLVMCCIEAQRWTPAKLFHEQLSLLAESNENIEHLRKLWAKIQEGISAQVAEE--AARASSG 2115
D+ D AFW +QR TG R ASW TFSA F TY+ +HY E + T EMVLRYAFDRGSPARA A + V P L+LFL RFGPM+SCL+KA+RSLFD+ GCL WFHG +SR++A AI +WE SR R + GVFLFRY+ + I FS+RR+ GE+ + LI+N G GY LP W +LREF+ + F HPV S LH EC E++ ++ P +QIA AR LF +AQ + G + R+L AL +V +V I+ E G PQL+ KALR DILW+L + E+GV Y R L +V++ ++ +A+ DGS V+ L ++H+LLA Y+L R L HFSEL+ACTTDED R++ V++F + + FR ATA LT SV+E+L EGI+YFR ++Y PA +FEK LR+ARCIGEG++EARALGN+ATVD+KTHRIPAAIRRYRTCVQLLRQ +QVTERKILNYLVMCCIEAQRW PAKLFHEQLS LAES EN+ HL +L +I+EG++ Q +E AA ASSG
Sbjct: 4 DEADTRAFWDLVQRTTGARSASWDTFSATFETYLRRHYAAEMSQLPRATRAEAEMVLRYAFDRGSPARAA---AGERVAPKHLALFLTRFGPMKSCLIKAARSLFDESGCLVPWFHGKLSREEARRAIEEWEASRGNGREQRGVFLFRYSDWHSTICFSFRRKKGERRLVTCLINNEGRRGYTLPDTSGDGCWRDLREFVAEQRRGDFRHPVPSALHRECVEEIEARRRAEQFVPTPENQIAHARQLFGDAQTMVYSRDRDMKAGFEATRILEGALGLVEKVEHILRELEQDQGDPQLQAKALRLGGDILWKLHREEEGVASYLRCLSVVSEAEKVPDASHDGSPVVTISVLSHIHQLLAEYFLSRGWHERGLDHFSELVACTTDEDARQQLVDDFRRNDGFRRATAGLTQSSVQEVLDEGISYFRCQDYGPAGVRFEKVLRNARCIGEGRMEARALGNLATVDYKTHRIPAAIRRYRTCVQLLRQQGNQVTERKILNYLVMCCIEAQRWAPAKLFHEQLSKLAESEENVLHLARLQERIEEGMALQARQEGDAAPASSG 560
BLAST of mRNA_H-paniculata_contig1520.3064.1 vs. uniprot
Match: D8LBM4_ECTSI (TPR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBM4_ECTSI) HSP 1 Score: 525 bits (1352), Expect = 1.510e-161 Identity = 300/558 (53.76%), Postives = 378/558 (67.74%), Query Frame = 1
Query: 496 DKEDALAFWAHLQRHTGNRFASWPTFSAYFLTYMEKHYPGEAER--GRTAPSTEMVLRYAFDRGSPARAESIDASKAVYPTDLSLFLQRFGPMRSCLVKASRSLFDDEGCLERWFHGNMSRDDAAEAIRDWEVSRV--RRRHGVFLFRYTPNRAQIAFSYRRRTGEK-VQHSLISN-GAAGYYLPKNDQQRVWANLREFINAMDQY-FVHPVTSDLHEECSRELQ---EPQEMPEPPVDQIARARILFQNAQALTCG----GGAQTIRVLREALEMVTEVLSIIGGSELGA--PQLEVKALRSEADILWQLEQREDGVKVYERYLELVAQVQEDQEATADGSSPVSRGALLYVHRLLAIYYLGERVPSRALYHFSELIACTTDEDPRRKRVEEFHQMEEFRNATARLTHGSVEEMLAEGITYFRREEYAPAAEKFEKALRDARCIGEGKLEARALGNVATVDFKTHRIPAAIRRYRTCVQLLRQLRDQVTERKILNYLVMCCIEAQRWTPAKLFHEQLSLLAESNENIEHLRKLWAKIQEGISAQVAEE--AARASSG 2115
D+ D AFW +QR TG R ASW TFSA F TY+ ++Y E + T EMVLRYAFDRGSPARA A + V P L+LFL RFGPMRSCL+KA+RSLFD+ GCL WFHG +SRD+A AI +WE SR R + GVFLFRY+ + I FS+RR+ GE+ + LI+N G+ GY LP W +LREF+ + F PV S LH EC E++ ++ P +QIA AR LF AQ + G + R+L+EAL +V +V I+ E G PQL+ KALR DILW+L + E GV Y R L +V++ ++ Q A+ GS V+ L +VH+LLA Y+L P R L HFSEL+ACTTDED RR+ V++F + + F+ ATA LT SV+E+L EGI+YFR ++Y PA +FEK LRDARCIGEG++EARALGN+ATVD+KTHRIPAAIRRYRTCVQLLRQ +Q TERKILNYLVMCCIEAQRW PAKLFHEQLS LAES +N++ L +L +I+EG++ Q +E AA ASSG
Sbjct: 4 DEADTRAFWDLMQRTTGARSASWDTFSATFETYLRRYYAAEMSQLPRATRAEAEMVLRYAFDRGSPARAA---AGERVAPKHLALFLTRFGPMRSCLIKAARSLFDESGCLVPWFHGKLSRDEARRAIEEWEASRGNGREQRGVFLFRYSDWHSTICFSFRRKRGERRLVTCLINNEGSRGYTLPDTSGDGCWRDLREFVAEQRRGDFQQPVPSALHRECVEEIEARRRAEQFVPTPENQIAYARQLFGEAQTMVYSRDMKAGFEATRILQEALGLVEKVEHILLELEQGQGDPQLQAKALRLGGDILWKLHREEKGVASYLRCLNVVSEAEKVQGASDHGSPVVTISVLSHVHQLLAEYFLSRGSPGRGLDHFSELVACTTDEDARRQLVDDFRRNDGFQRATAGLTQSSVQEILDEGISYFRCQDYGPAGVRFEKVLRDARCIGEGRMEARALGNLATVDYKTHRIPAAIRRYRTCVQLLRQQGNQATERKILNYLVMCCIEAQRWAPAKLFHEQLSKLAESEQNVQLLGRLQERIEEGMALQARQEGDAAPASSG 558
BLAST of mRNA_H-paniculata_contig1520.3064.1 vs. uniprot
Match: K8YX09_NANGC (Tpr domain-containing protein (Fragment) n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YX09_NANGC) HSP 1 Score: 103 bits (257), Expect = 1.230e-19 Identity = 90/310 (29.03%), Postives = 148/310 (47.74%), Query Frame = 1
Query: 1177 VDQIARARILFQNAQALT-CGGGAQTIRVLREALEMVTEVLSIIGGSELGAPQLEVKA-------LRSEADILWQLEQREDGVKVYERYLELVAQVQEDQEATADGSSPVSRGALLYVHRLLAIYYLGERVPSRALYHFSELIACTTDEDPRRKRVEEFHQMEEFRNATARLTHGSVEEMLAEGITYFRREEYAPAAEKFEKALRDARCI----GEGK--LEARALGNVATVDFKTHRIPAAIRRYRTCVQLLRQLRDQVTERKILNYLVMCCIEAQRWTPAKLFHEQLSLLAESNENIEHLRKLWAKIQ 2064
V + A L A T CG + +L + L M + + + + + A +VK L EA + ++L V+ R L Q+A +L YVH LA +YL R + L HF +L+A T D RR+ + EF ++ + +T G +++ L +G ++R + + AA +F + ++ AR G+G +EARALGN ATV R +I YR C +LL +L ++ ER++LN L + IEA R+ A + E+L +L E ++N+E ++ +IQ
Sbjct: 58 VSSMGEAATLLNRAMLNTACGRFEDALCLLDDVLGMASTETTSVEEARMQARAAKVKGTVLQEMGLMKEASVWYEL-----SVRAGRRLL---------QQAPLSEDLRKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDAGDRRRLLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRLEEIQ 353
BLAST of mRNA_H-paniculata_contig1520.3064.1 vs. uniprot
Match: A0A4D9CYM5_9STRA (SH2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYM5_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 3.260e-17 Identity = 89/310 (28.71%), Postives = 146/310 (47.10%), Query Frame = 1
Query: 1177 VDQIARARILFQNAQALT-CGGGAQTIRVLREALEMVTEVLSIIGGSELGAPQLEVKA-------LRSEADILWQLEQREDGVKVYERYLELVAQVQEDQEATADGSSPVSRGALLYVHRLLAIYYLGERVPSRALYHFSELIACTTDEDPRRKRVEEFHQMEEFRNATARLTHGSVEEMLAEGITYFRREEYAPAAEKFEKALRDARCI----GEGK--LEARALGNVATVDFKTHRIPAAIRRYRTCVQLLRQLRDQVTERKILNYLVMCCIEAQRWTPAKLFHEQLSLLAESNENIEHLRKLWAKIQ 2064
V + A L A T CG + +L + L M + + + + + A +VK L EA + ++L V+ R L Q+A +L YVH LA +YL R + L HF +L+A T D RR + EF ++ + +T G +++ L +G ++R + + AA +F + ++ AR G+G +EARALGN ATV R +I YR C +LL +L ++ ER++LN L + IEA R+ A + E+L +L E ++N+ ++ +IQ
Sbjct: 493 VSSMGEAATLLNRAMLNTACGRFEDALCLLDDVLGMASTETTSVEEARMQARAAKVKGTVLQEMGLMKEASVWYEL-----SVRAGRRLL---------QQAPLSEDLSKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDVGDRRLLLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVGLVKTRLEEIQ 788 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1520.3064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1520.3064.1 >prot_H-paniculata_contig1520.3064.1 ID=prot_H-paniculata_contig1520.3064.1|Name=mRNA_H-paniculata_contig1520.3064.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=577bp MDSSDKEDALAFWAHLQRHTGNRFASWPTFSAYFLTYMEKHYPGEAERGRback to top mRNA from alignment at H-paniculata_contig1520:3051..25359+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1520.3064.1 ID=mRNA_H-paniculata_contig1520.3064.1|Name=mRNA_H-paniculata_contig1520.3064.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=22309bp|location=Sequence derived from alignment at H-paniculata_contig1520:3051..25359+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1520:3051..25359+ >mRNA_H-paniculata_contig1520.3064.1 ID=mRNA_H-paniculata_contig1520.3064.1|Name=mRNA_H-paniculata_contig1520.3064.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3462bp|location=Sequence derived from alignment at H-paniculata_contig1520:3051..25359+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |