mRNA_H-paniculata_contig1002.29.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1002.29.1
Unique NamemRNA_H-paniculata_contig1002.29.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1002.29.1 vs. uniprot
Match: D8LL37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL37_ECTSI)

HSP 1 Score: 557 bits (1435), Expect = 1.820e-192
Identity = 271/356 (76.12%), Postives = 296/356 (83.15%), Query Frame = 1
Query:  181 MALVSTEAQLRSMSPGPSRFMTMNLVSVGPCTVSNGVTSYGRTVRRTRTRDNHTTADVDGTRTF-KTSTLNNNKPXXXXXXXXXXXXSLRLHKDTNKPDRQLFHDDIEGSKPKMKSRFQTNRRVNPLEPEYILPSYVPAPNVCPKFTRDSYDVSDIEGTKSRPLYRFAERKNHFIDDIEGAQCGWKPRHSQARHNAPPLDHCLNVGDITGGDFRTRRTTNPLTPSYRVNGMDIADDPVASRPRSLPKARDGPFYPLTTVDIEGAQPGWRPMPQVNPPLETRRHFRNTNFVGDIPGAQADTVEHSICTDRHINPLYPLYASLDGEPLENPQTPLYKEPACVEAEEQLDRTIAVEGAS 1245
            MALVSTE QLRSMS GP RFMTMNL+S GPCTVS   TSYGRTVRR  TRDNHTTADVDG +TF +TSTL N KP            S+RLHKDTNKPDRQL+HDDIEGS P+ K  F+T R ++PLEPEY LPS+  AP + PKFTRDS+DVSDIEGTKSRPLY   +R N  +DDIEGAQ GWKPRH +ARH A PLDHCLNV DITGG FRTRR TNPLTPSYRVNGMD+ADDPV SRPR+LPKA+DGPFYPLTT DIEGA PGWRP+PQVNPPLE RRHFRNTNF+GDIPGAQADTV+HSICT RH+NPL P+Y SLDGEPL NPQTPLYKEPACVEAE QLDR+IA E A+
Sbjct:    1 MALVSTETQLRSMSAGPERFMTMNLMSSGPCTVSKKATSYGRTVRRLNTRDNHTTADVDGAQTFVRTSTLTN-KPDSYGVADILGTGSMRLHKDTNKPDRQLYHDDIEGSNPRNKWLFRTTRCIDPLEPEYTLPSFTTAPPIAPKFTRDSHDVSDIEGTKSRPLYPLEQRHNTLVDDIEGAQSGWKPRHRRARHEAAPLDHCLNVSDITGGGFRTRRATNPLTPSYRVNGMDVADDPVKSRPRALPKAKDGPFYPLTTADIEGATPGWRPLPQVNPPLEARRHFRNTNFMGDIPGAQADTVKHSICTQRHVNPLNPVYDSLDGEPLANPQTPLYKEPACVEAEAQLDRSIAAEEAA 355          
BLAST of mRNA_H-paniculata_contig1002.29.1 vs. uniprot
Match: A0A6H5K072_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K072_9PHAE)

HSP 1 Score: 529 bits (1362), Expect = 1.920e-181
Identity = 261/356 (73.31%), Postives = 285/356 (80.06%), Query Frame = 1
Query:  181 MALVSTEAQLRSMSPGPSRFMTMNLVSVGPCTVSNGVTSYGRTVRRTRTRDNHTTADVDGTRTF-KTSTLNNNKPXXXXXXXXXXXXSLRLHKDTNKPDRQLFHDDIEGSKPKMKSRFQTNRRVNPLEPEYILPSYVPAPNVCPKFTRDSYDVSDIEGTKSRPLYRFAERKNHFIDDIEGAQCGWKPRHSQARHNAPPLDHCLNVGDITGGDFRTRRTTNPLTPSYRVNGMDIADDPVASRPRSLPKARDGPFYPLTTVDIEGAQPGWRPMPQVNPPLETRRHFRNTNFVGDIPGAQADTVEHSICTDRHINPLYPLYASLDGEPLENPQTPLYKEPACVEAEEQLDRTIAVEGAS 1245
            MALVSTE QLRSMS GP RFMTMNL+S GPCTVS   TSYGRTVRR  TRDNHTTADVDG RTF +TSTL N KP            S+RLHKDTNKPDRQL+HDDIEGS P+ + RF+T R ++PLEPEY LPS+  A  + PKFTRDS+DVSDIEGTKSR                  AQ GWKPRH +ARH A PLDHCLNV DITGG FRTRR TNPLTPSYRVNGMD+ADDPV SRPR+LPKA+DGPFYPLTT DIEGA PGWRP+PQVNPPLE RRHFRNTNF+GDIPGAQADTV+HSICT+RH+NPL P+Y SLDGEPL NPQTPLYKEPACVEAE QLDR+IA E A+
Sbjct:    1 MALVSTETQLRSMSAGPERFMTMNLMSSGPCTVSKKATSYGRTVRRLNTRDNHTTADVDGARTFVRTSTLTN-KPDSYGVADILGTGSMRLHKDTNKPDRQLYHDDIEGSNPRNQWRFRTTRCIDPLEPEYTLPSFTTATPIAPKFTRDSHDVSDIEGTKSRXXXXXXXXXXXXXXXXXXAQSGWKPRHRRARHEAAPLDHCLNVSDITGGGFRTRRATNPLTPSYRVNGMDVADDPVKSRPRALPKAKDGPFYPLTTADIEGATPGWRPLPQVNPPLEARRHFRNTNFMGDIPGAQADTVKHSICTERHVNPLDPVYDSLDGEPLANPQTPLYKEPACVEAEAQLDRSIAAEEAA 355          
BLAST of mRNA_H-paniculata_contig1002.29.1 vs. uniprot
Match: A0A836CFT1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFT1_9STRA)

HSP 1 Score: 340 bits (871), Expect = 1.490e-108
Identity = 169/323 (52.32%), Postives = 210/323 (65.02%), Query Frame = 1
Query:  223 PGPSRFMTMNLVSVGPCTVSNGVTSYGRTVRRTRTRDNHTTADVDGTRTFKTSTLNNNKPXXXXXXXXXXXXSLRLHKDTNKPDRQLFHDDIEGSKPKMKSRFQTNRRVNPLEPEYILPSYVPAPNVCPKFTRDSYDVSDIEGTKSRPLYRFAERKNHFIDDIEGAQCGWKPRHSQARHNAPPLDHCLNVGDITGGDFRTRRTTNPLTPSYRVNGMDIADDPVASRPRSLPKARDGPFYPLTTVDIEGAQPGWRPMPQVNPPLETRRHFRNTNFVGDIPGAQADTVEHSICTDRHINPLYPLYASLDGEPLENPQTPLYKEPA 1191
            P P  + TMNL + G CTV    TS G TVRR  TRD     D+DG RT         +P            SLRLH+++NKPD  L   D+ G   + +   +T R V+PL+P+Y LPSY  AP   PKF RDSY V DIEGT  +PLYR+ +R+          +CGWKPRH++AR  APPLD+ LNV DIT   F+T+R TNPL P YR  G +IADDPV SRPR+LP  ++ PF+ LTT DIEGAQPGW+P  Q++PPLE RRH+RNTN+VGDI GA AD+V H+I TDRH++PL PLY SLDGEP+  P +P Y+  A
Sbjct:    4 PLPPEYATMNLTAGGVCTVPKEQTSRGWTVRRLATRDVMRVDDIDGARTHIPVANITKRPDLYNVNDISGACSLRLHRESNKPDTTLLCADVNGLTLRRREFLRTERHVDPLDPDYKLPSYTAAPPPQPKFVRDSYSVDDIEGTHPKPLYRYQQREXXXXXXXXXTKCGWKPRHARARAEAPPLDYALNVKDITDSGFKTQRCTNPLVPVYRCYGKEIADDPVESRPRALPPQKNAPFFSLTTADIEGAQPGWKPPTQLHPPLEQRRHWRNTNYVGDIRGASADSVRHAIRTDRHVDPLNPLYRSLDGEPMGGPTSPRYRSAA 326          
BLAST of mRNA_H-paniculata_contig1002.29.1 vs. uniprot
Match: F0YFZ5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFZ5_AURAN)

HSP 1 Score: 259 bits (662), Expect = 1.360e-75
Identity = 127/232 (54.74%), Postives = 158/232 (68.10%), Query Frame = 1
Query:  478 QLFHDDIEGSKPKMKSRFQTNRRVNPLEPEYILPSYVPAPNVCPKFTRDSYDVSDIEGTKSRPLYRFAERKNHFIDDIEGAQCGWKPRHSQARHNAPPLDHCLNVGDITGGDFRTRRTTNPLTPSYRVNGMDIADDPVASRPRSLPKARDGPFYPLTTVDIEGAQPGWRPMPQVNPPLETRRHFRNTNFVGDIPGAQADTVEHSICTDRHINPLYPLYASLDGEPLENPQTP 1173
            +L   DIEGSKP+    F+T R VNPL PEY LPS        PKF RD Y +SDIEGT  R  +RFA+R+ + + DIEGAQ GW+PRH + R   PP+D  LNV DI    F+T R T+PL P++R+NGM++ DD V + P+ LPK  DGP   L T DIEGA+ GW+P  ++ PPLE RRHFRNTN++GDI GAQ DTV+HSI T R  NPL+P Y SLDG+ L +P  P
Sbjct:   13 RLAETDIEGSKPRP-LHFKTERHVNPLCPEYTLPSCALDMPPVPKFVRDGYGISDIEGTAPRSRFRFAQRETYDVKDIEGAQAGWRPRHERVRREGPPMDS-LNVKDINDIGFKTTRVTDPLRPTHRINGMEVKDDMVRTMPKKLPKPHDGPTLSLYTDDIEGARCGWKPPHEMQPPLEKRRHFRNTNYIGDITGAQPDTVKHSIRTQRETNPLHPAYRSLDGDLLGDPTQP 242          
BLAST of mRNA_H-paniculata_contig1002.29.1 vs. uniprot
Match: A0A7S3ZUA3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZUA3_9STRA)

HSP 1 Score: 234 bits (597), Expect = 5.900e-68
Identity = 132/315 (41.90%), Postives = 178/315 (56.51%), Query Frame = 1
Query:  235 RFMTMNLVSVGPCTVSNGVTSYGRTVRRTRTRDNHTTADVDGTRT-FKTSTLNNNKPXXXXXXXXXXXXSLRLHKDTNKPDRQLFHDD-IEGSKPKMKSRFQTNRRVNPLEPEYILPSYVPAPNVCPKFTRDSYDVSDIEGTKSRPLYRFAERKNHFIDDIEGAQCGWKPRHSQARHNAPPLDHCLNVGDITGGDFRTRRTTNPLTPSYRVNGMDIADDPVASRPRSLPKARDGPFYPLTTVDIEGAQPGWRPMPQVNPPLETRRHFRNTNFVGDIPGAQADTVEHSICTDRHINPLYPLYASLDGEPLENPQTP 1173
            RF TM+L S G CT++N         R     +++   D+DG     K       +P             ++LH    +P+   +H++ IEGSKP+ ++RF++NR  +PL PEY+LP         PKF RD Y V+DI+GT  +                  AQ  W+PRH +AR  APP D  L+V DI    F T R T+P+ P Y +NGM+  DDP+ ++PR+LPKA  GP+  L T DI GA+ GWRP  ++ PP E RRH+R+TNFVGDI GAQADTV+H+I T R  NPL P Y SLDG+ L +P  P
Sbjct:   10 RFQTMSLQSAGACTIANKE-------RPACAHESNYVGDIDGAAPELKYMRYTARRPDLYVTKDIEKSSPMKLHARGPQPNPNEWHNNPIEGSKPR-ETRFKSNRHTDPLAPEYVLPRCKLEKPPTPKFIRDGYTVTDIDGTVPKXXXXXXXXXXXXXXXXXXAQASWRPRHERARREAPPRDG-LDVRDIMDEGFTTTRVTDPMNPHYFMNGMETCDDPIRTKPRALPKAIPGPYRSLYTDDILGAKSGWRPPHEMQPPPEKRRHWRHTNFVGDIGGAQADTVQHTIPTKRRTNPLNPAYRSLDGDILPDPTKP 315          
BLAST of mRNA_H-paniculata_contig1002.29.1 vs. uniprot
Match: A0A7S1UJ89_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJ89_9STRA)

HSP 1 Score: 223 bits (569), Expect = 7.290e-63
Identity = 139/322 (43.17%), Postives = 175/322 (54.35%), Query Frame = 1
Query:  238 FMTMNLVSVGPCTVSNGVTSYGRTVRRTRTRDNHTTADVDGTRTFKTSTLNNNKPXXXXXXXXXXXXSLRLHKDTNKPDRQLFHDDIEGSKPKMKSRFQTNRRVNPLEPEYILPSYVPAPNVCPKFTRDSYDVSDIEGTKSRPLYRFAERKNHFIDDIEGAQCGWKPRHSQARHNAPPLDHCLNVGDITGGDFRTRRTTNPLTPSYRVNGMDIADDPVASRPRSLPKARDGPFYPLTTVDIEGAQPGWRPMPQVNPPLETRRHFRNTNFVGDIPGAQADTVEHSICTDRHINPLYPLYASLDGEPLENPQTPLYKEPACVEA 1203
            + TMN+ + GPCTV        R V  T+TR  + T D+DG + F   T   NKP      XXXXXX                         +      T RRV+PL P Y LPS+  AP        D+  V DI GT S+PLY F +R NH +DDIEGAQ GWKPR+             L+V DI    F++ R T+P  P + VNGM I DD     P+ LP  ++ PF+ L + DIEGA  GW P   + P +E RRHFRNTNFVGDI GAQ+DTV+H+I T R++NPL P Y SLDG  L+ P  P+Y +PA +EA
Sbjct:    9 WQTMNITTSGPCTVETA----NRLV--TKTRATNRTDDIDGAKPFLRYTQFTNKPDSFQIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRPSRFLSTKRRVDPLVPTYTLPSFRKAPAPEQPHYSDTMKVEDIAGTHSKPLYPFPQRINHKVDDIEGAQSGWKPRYRNV-FMTEERPSSLDVSDIAKEGFKSTRVTDPNRPVHYVNGMTIQDDLRYCMPKRLPPQKNTPFFSLQSNDIEGAVSGWVPPHALRPAIEDRRHFRNTNFVGDIEGAQSDTVKHTIRTKRNVNPLNPYYRSLDGILLDPPCRPMYHDPAVLEA 323          
BLAST of mRNA_H-paniculata_contig1002.29.1 vs. uniprot
Match: A0A2D4CDY6_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDY6_PYTIN)

HSP 1 Score: 197 bits (500), Expect = 1.080e-52
Identity = 125/281 (44.48%), Postives = 153/281 (54.45%), Query Frame = 1
Query:  337 HTT---ADVDGTRTFKTSTLNNNKPXXXXXXXXXXXXSLRLHKDTNKPDRQLFHDD------IEGSKPKMKSRFQTNRRVNPLEPEYILPSYVPAPNVCPKFTRDSYDVSDIEGTKSRPLYRFAERKNHFIDDIEGAQCGWKPRHSQARHNAPPLDHCLNVGDITGGDFRTRRTTNPLTPSYRVNGMDIADDPVASRPRSLPKARDGPFYPLTTVDIEGAQPGWRPMPQV-NPPLETRRHFRNTNFVGDIPGAQADTVEHSICTDRHINPLYPLYASLDGE 1149
            HTT   +D+ G R      +  NKP            S  LH       R++  DD      IEGS P+  S F+TNR VNP+EPEY LPS+  AP + PKF RDSYDVSDI GT  +P      R    +DDI GAQ GW P H +A    PP D  L+V DI   DF++ R T+ L P Y+VNGM   DD + S P+ L   R+ P Y   T DI GA P       V N P E RRHFR TN   DI GA ADTV HSI ++R ++P +P Y +LDG+
Sbjct:   43 HTTNDISDIAGARPLLKDHVYVNKPHFHEPNDIPGSCSKELHP----KHRRVGSDDRFKQLHIEGSSPRP-SGFRTNRVVNPMEPEYKLPSFQAAPPLIPKFLRDSYDVSDIAGTSFKPKVITNPRSPLRVDDIAGAQAGWLPFHRRASREHPPRD-ILDVADIVNVDFKSSRVTDVLNPVYKVNGMTYQDDAL-SHPKLLHPQRNKPSYAXQTADIAGANPFDASKTVVGNIPNEKRRHFRQTNRTDDITGATADTVMHSIRSNRRVDPTWPDYVALDGQ 316          
BLAST of mRNA_H-paniculata_contig1002.29.1 vs. uniprot
Match: A0A7S2DC98_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DC98_9STRA)

HSP 1 Score: 191 bits (485), Expect = 6.550e-52
Identity = 91/181 (50.28%), Postives = 116/181 (64.09%), Query Frame = 1
Query:  616 TRDSYDVSDIEGTKSRPLYRFAERKNHFIDDIEGAQCGWKPRHSQARHNAPPLDHCLNVGDITGGDFRTRRTTNPLTPSYRVNGMDIADDPVASRPRSLPKARDGPFYPLTTVDIEGAQPGWRPMPQVNPPLETRRHFRNTNFVGDIPGAQADTVEHSICTDRHINPLYPLYASLDGEPLE 1158
            T   Y      G K   L+RF  R  H + DIEG Q GW+PRH+ AR    P+ + L+V DI    F+++R   PL P Y+++GM + DD   + PR LPKA +  +Y L + DI GA  GW+P  Q+ PP+E RRHFRNTNF+GDIPGAQ DTV H++ TDR  NPL P+Y SLDGEPLE
Sbjct:   11 THIMYTTLRAHGQKK--LHRFEMRDTHTVTDIEGTQPGWRPRHANARRQNNPIRNELDVKDINDTGFKSQRMNCPLRPEYKIHGMTVGDDMSKTMPRKLPKAAEHEYYSLKSDDITGATCGWKPPVQIYPPMEARRHFRNTNFIGDIPGAQPDTVNHAMRTDRVTNPLEPVYRSLDGEPLE 189          
BLAST of mRNA_H-paniculata_contig1002.29.1 vs. uniprot
Match: A0A2P4X5K5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X5K5_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.440e-51
Identity = 106/209 (50.72%), Postives = 129/209 (61.72%), Query Frame = 1
Query:  529 FQTNRRVNPLEPEYILPSYVPAPNVCPKFTRDSYDVSDIEGTKSRPLYRFAERKNHFIDDIEGAQCGWKPRHSQARHNAPPLDHCLNVGDITGGDFRTRRTTNPLTPSYRVNGMDIADDPVASRPRSLPKARDGPFYPLTTVDIEGA---QPGWRPMPQVNPPLETRRHFRNTNFVGDIPGAQADTVEHSICTDRHINPLYPLYASLDG 1146
            F TNR VNPLEP Y LPS+  AP+V PKF RDSY+VSDIEGT  +       R    ++DI GAQ GW PRH +     PP D  LNV DIT  DF++ R TN L P Y VNGM IADDP+ SRP +    RD P + L T DI+GA    P    +  +   +  RR FR+TN   DI GA+ADT+ HSI + RHI+P+ P Y+ LDG
Sbjct:   50 FHTNRVVNPLEPNYKLPSFTKAPSVEPKFLRDSYNVSDIEGTSIKIRDIQHPRDGLKLNDIAGAQAGWLPRHKRGLRENPPRD-ILNVTDITNVDFKSSRVTNVLNPVYSVNGMTIADDPL-SRPLAQHPKRDKPNFTLRTDDIDGAGCSDPATAIVAGII--MSKRRDFRDTNVTSDITGAKADTLLHSIRSTRHIDPISPKYSGLDG 254          
BLAST of mRNA_H-paniculata_contig1002.29.1 vs. uniprot
Match: G4Z4F7_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4Z4F7_PHYSP)

HSP 1 Score: 188 bits (477), Expect = 2.330e-49
Identity = 107/209 (51.20%), Postives = 129/209 (61.72%), Query Frame = 1
Query:  529 FQTNRRVNPLEPEYILPSYVPAPNVCPKFTRDSYDVSDIEGTKSRPLYRFAERKNHFIDDIEGAQCGWKPRHSQARHNAPPLDHCLNVGDITGGDFRTRRTTNPLTPSYRVNGMDIADDPVASRPRSLPKARDGPFYPLTTVDIEGAQ---PGWRPMPQVNPPLETRRHFRNTNFVGDIPGAQADTVEHSICTDRHINPLYPLYASLDG 1146
            F+T+R VNPLEP Y LPS+V AP + PKF RDSY+VSDIEGT  +       R    +DDI G QCGW PRH +     PP D  LNV DIT  DFR+ R TN L P Y VNGM  ADDP+ SRP      RD P Y L T DIEGA    P    +  +   +  RR+FR+TN   DI GA+ADT+ HSI + R ++P  PLY++LDG
Sbjct:  109 FRTDRVVNPLEPNYKLPSFVKAPPLEPKFLRDSYNVSDIEGTSIKIRDIQHPRDGLKVDDIAGTQCGWLPRHKRGLRENPPRD-ILNVQDITNVDFRSSRVTNVLNPVYTVNGMTFADDPL-SRPLVQHPKRDKPNYALKTDDIEGASCADPATAIVAGIV--MAHRRNFRDTNVTKDITGAKADTLLHSIRSTRRVDPNAPLYSALDG 313          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1002.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL37_ECTSI1.820e-19276.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K072_9PHAE1.920e-18173.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CFT1_9STRA1.490e-10852.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0YFZ5_AURAN1.360e-7554.74Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3ZUA3_9STRA5.900e-6841.90Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A7S1UJ89_9STRA7.290e-6343.17Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2D4CDY6_PYTIN1.080e-5244.48Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A7S2DC98_9STRA6.550e-5250.28Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A2P4X5K5_9STRA1.440e-5150.72Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
G4Z4F7_PHYSP2.330e-4951.20Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1002contigH-paniculata_contig1002:5828..8366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score557.0
Seed ortholog evalue1.1e-155
Seed eggNOG ortholog2880.D8LL37
Hectar predicted targeting categoryother localisation
EggNOG OGs2C1R0@1,2RZH6@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_003400.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1944
Cds size1764
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1002.29.1prot_H-paniculata_contig1002.29.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1002 6008..8366 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928710.0591397-UTR-H-paniculata_contig1002:5827..60071622928710.0591397-UTR-H-paniculata_contig1002:5827..6007Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1002 5828..6007 +
1691480587.5016289-UTR-H-paniculata_contig1002:5827..60071691480587.5016289-UTR-H-paniculata_contig1002:5827..6007Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1002 5828..6007 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928710.0722148-CDS-H-paniculata_contig1002:6007..62471622928710.0722148-CDS-H-paniculata_contig1002:6007..6247Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1002 6008..6247 +
1691480587.5155282-CDS-H-paniculata_contig1002:6007..62471691480587.5155282-CDS-H-paniculata_contig1002:6007..6247Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1002 6008..6247 +
1622928710.0920186-CDS-H-paniculata_contig1002:6677..80161622928710.0920186-CDS-H-paniculata_contig1002:6677..8016Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1002 6678..8016 +
1691480587.5401413-CDS-H-paniculata_contig1002:6677..80161691480587.5401413-CDS-H-paniculata_contig1002:6677..8016Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1002 6678..8016 +
1622928710.122848-CDS-H-paniculata_contig1002:8181..83661622928710.122848-CDS-H-paniculata_contig1002:8181..8366Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1002 8182..8366 +
1691480587.5586846-CDS-H-paniculata_contig1002:8181..83661691480587.5586846-CDS-H-paniculata_contig1002:8181..8366Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1002 8182..8366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1002.29.1

>prot_H-paniculata_contig1002.29.1 ID=prot_H-paniculata_contig1002.29.1|Name=mRNA_H-paniculata_contig1002.29.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=588bp
MALVSTEAQLRSMSPGPSRFMTMNLVSVGPCTVSNGVTSYGRTVRRTRTR
DNHTTADVDGTRTFKTSTLNNNKPDSHDISDIDGTASLRLHKDTNKPDRQ
LFHDDIEGSKPKMKSRFQTNRRVNPLEPEYILPSYVPAPNVCPKFTRDSY
DVSDIEGTKSRPLYRFAERKNHFIDDIEGAQCGWKPRHSQARHNAPPLDH
CLNVGDITGGDFRTRRTTNPLTPSYRVNGMDIADDPVASRPRSLPKARDG
PFYPLTTVDIEGAQPGWRPMPQVNPPLETRRHFRNTNFVGDIPGAQADTV
EHSICTDRHINPLYPLYASLDGEPLENPQTPLYKEPACVEAEEQLDRTIA
VEGASVANINNGLGNEEPRNDKNSVSNQQISEQKQQNERVRSLRERPSSE
PLPLGRRSTTCNSGSGSSRQISDKGATKISDGESVSSSCSTSNRGPGNKN
SKDEIIKRLEHELRSLRKEGSGSAWQKCKSLSNGVAVAKGSHGSGRATPH
SWPGSAAERGGANHTRARTRSRRGTIKAGWGAMEIRSCGEQVSGGNERAE
RLVLRSANGTPRVPLTPAEMRVAREYVDDVSSVRDLV*
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mRNA from alignment at H-paniculata_contig1002:5828..8366+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1002.29.1 ID=mRNA_H-paniculata_contig1002.29.1|Name=mRNA_H-paniculata_contig1002.29.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2539bp|location=Sequence derived from alignment at H-paniculata_contig1002:5828..8366+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAATGCATGACTGAAGGGCACCCGTATCCAACTTGTTGTTAAAATTGAC CGTAGAGATGATACATACCGCAGGGATCCACTCCAGCTGGTTTTTTATAC TTGCATCAGTATTTCCTCCGCGGAGTTGAAAAGGGAATAAAGCGAGATCA TTAGCCTCGTGGAAACCCTGCACACGAGATATGGCGCTCGTGAGCACGGA GGCGCAGCTCCGGTCCATGTCACCGGGTCCCAGCCGATTCATGACCATGA ACCTCGTGTCTGTTGGACCCTGTACTGTAAGCAACGGTGTCACTTCCTAT GGCAGGACCGTGCGTCGGACAAGAACAAGAGATAACCACACCACAGCGGA CGTTGATGGCACTCGCACGTTCAAGACCAGCACCCTCAACAACAACAAGC CCGATTCTCACGACATCTCGGTGAGTGAGGCAGACAAAGAAGTGAGCGGA GTGAGGGGGCCTGTTATACAGTGAGGCGACTCGAAAAGTGGTTGTTGATA ATTGTCATTGCAGAAAATGACGAATTGGCGAACATGAACTCTCCAGGTGT TAGAAAATGTATACAAATTTTGTGTCGATCATACCTTTCGCAAAAATGGC AGGGAAATATTGAACGAGACGTAGCATTAAACATTGGTCCATTGTACACG CTGAACTGTCGACGGCAGTACCTGGCTGGTGTCAACAATAAATAAAGCCG TTGCAAAATACGTCAGAATGTCCGACTTCTTTTTTGAAGTTGCTCTTGCA GGTGGTCATTCATGCATAACTTCTACCCTACATCGACCTTTATATCTCAA CTGTATAAAAGTCTAACCGATTGACGCACGCTTACCCATGGCTCGTCCAG GATATCGACGGCACCGCCTCGCTGCGCTTACACAAGGACACAAACAAGCC GGACCGACAGCTGTTCCACGATGATATCGAGGGGAGCAAGCCCAAGATGA AATCGCGTTTCCAAACAAACCGCCGCGTCAACCCTTTAGAACCGGAGTAC ATCCTTCCATCCTATGTCCCAGCACCTAACGTATGCCCAAAGTTTACTCG GGACTCCTACGATGTCTCGGATATTGAAGGTACGAAGAGTCGACCACTCT ACCGATTTGCTGAACGCAAAAACCACTTTATAGATGACATCGAGGGAGCG CAGTGTGGCTGGAAGCCGAGGCACTCGCAGGCTCGTCATAATGCCCCACC CCTGGATCATTGTTTAAACGTCGGCGACATCACTGGTGGCGACTTTCGCA CAAGGCGCACGACGAACCCGTTGACCCCCTCGTATCGAGTGAATGGTATG GATATCGCCGACGATCCTGTGGCATCGAGGCCGCGCTCTTTGCCAAAGGC AAGGGATGGACCTTTCTACCCTCTCACAACGGTCGACATCGAAGGTGCGC AGCCAGGCTGGCGTCCAATGCCACAGGTAAACCCTCCTCTGGAAACGCGG CGACACTTCCGAAATACCAATTTTGTGGGAGATATTCCTGGAGCACAGGC GGACACCGTGGAGCATTCCATCTGCACAGATCGTCACATCAACCCTCTAT ACCCTCTGTACGCTAGCCTCGATGGTGAGCCACTGGAGAATCCCCAAACA CCGCTATACAAGGAACCCGCTTGCGTCGAGGCGGAAGAACAGCTCGATCG GACAATTGCTGTCGAGGGAGCGTCGGTAGCCAACATAAACAACGGGTTAG GAAACGAAGAACCACGGAACGACAAGAATAGCGTCAGCAATCAGCAAATA TCGGAGCAAAAACAGCAAAACGAACGAGTTAGATCTTTGCGCGAGCGCCC CTCGTCGGAGCCCTTACCATTAGGTCGTCGCAGCACCACTTGCAACAGTG GAAGCGGCAGCAGCCGTCAGATCAGCGACAAGGGAGCTACCAAAATCAGT GACGGTGAGAGCGTATCCTCTTCCTGCTCGACATCAAACCGCGGTCCGGG TAACAAAAATAGCAAGGACGAGATCATCAAGCGACTGGAACACGAGCTAC GATCTCTACGGAAGGAGGGCAGCGGCTCAGCGTGGCAAAAATGCAAATCC CTGTCCAACGGAGTCGCGGTGGCAAAGGGCAGCCACGGAAGTGGACGGGC CACCCCCCATTCGTGGCCGGGCTCTGCTGCAGAGCGCGGAGGGGCCAACC ACACTCGCGCTAGAACACGGAGCAGGCGGGGGACGATAAGTACCTCGACA TCTGATAATAACATAAACCGTCGGCTCCCAGCTTCATCCGAAGTAGCTCG GATGGAACTCAAGGGCGGTGGAGTCGCACCACGGGCGCCCTTCAGCGGGG GAAGTCGGGGCGTTGAGTGTTGCGGGCGACGGGAGAGAGAGCGCGAAAAT AGAGAGGCTGGTTGGGGGGCAATGGAGATTCGGTCCTGCGGTGAGCAGGT TAGTGGCGGCAATGAGCGTGCAGAGCGATTGGTGTTGCGTAGCGCTAATG GTACGCCGCGGGTGCCCCTGACTCCGGCCGAGATGAGAGTAGCTCGGGAA TACGTCGATGATGTGAGCTCTGTACGTGACCTTGTCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1002:5828..8366+

>mRNA_H-paniculata_contig1002.29.1 ID=mRNA_H-paniculata_contig1002.29.1|Name=mRNA_H-paniculata_contig1002.29.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3528bp|location=Sequence derived from alignment at H-paniculata_contig1002:5828..8366+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCTCGTGAGCACGGAGGCGCAGCTCCGGTCCATGTCACCGGGTCC
CAGCCGATTCATGACCATGAACCTCGTGTCTGTTGGACCCTGTACTGTAA
GCAACGGTGTCACTTCCTATGGCAGGACCGTGCGTCGGACAAGAACAAGA
GATAACCACACCACAGCGGACGTTGATGGCACTCGCACGTTCAAGACCAG
CACCCTCAACAACAACAAGCCCGATTCTCACGACATCTCGATGGCGCTCG
TGAGCACGGAGGCGCAGCTCCGGTCCATGTCACCGGGTCCCAGCCGATTC
ATGACCATGAACCTCGTGTCTGTTGGACCCTGTACTGTAAGCAACGGTGT
CACTTCCTATGGCAGGACCGTGCGTCGGACAAGAACAAGAGATAACCACA
CCACAGCGGACGTTGATGGCACTCGCACGTTCAAGACCAGCACCCTCAAC
AACAACAAGCCCGATTCTCACGACATCTCGGATATCGACGGCACCGCCTC
GCTGCGCTTACACAAGGACACAAACAAGCCGGACCGACAGCTGTTCCACG
ATGATATCGAGGGGAGCAAGCCCAAGATGAAATCGCGTTTCCAAACAAAC
CGCCGCGTCAACCCTTTAGAACCGGAGTACATCCTTCCATCCTATGTCCC
AGCACCTAACGTATGCCCAAAGTTTACTCGGGACTCCTACGATGTCTCGG
ATATTGAAGGTACGAAGAGTCGACCACTCTACCGATTTGCTGAACGCAAA
AACCACTTTATAGATGACATCGAGGGAGCGCAGTGTGGCTGGAAGCCGAG
GCACTCGCAGGCTCGTCATAATGCCCCACCCCTGGATCATTGTTTAAACG
TCGGCGACATCACTGGTGGCGACTTTCGCACAAGGCGCACGACGAACCCG
TTGACCCCCTCGTATCGAGTGAATGGTATGGATATCGCCGACGATCCTGT
GGCATCGAGGCCGCGCTCTTTGCCAAAGGCAAGGGATGGACCTTTCTACC
CTCTCACAACGGTCGACATCGAAGGTGCGCAGCCAGGCTGGCGTCCAATG
CCACAGGTAAACCCTCCTCTGGAAACGCGGCGACACTTCCGAAATACCAA
TTTTGTGGGAGATATTCCTGGAGCACAGGCGGACACCGTGGAGCATTCCA
TCTGCACAGATCGTCACATCAACCCTCTATACCCTCTGTACGCTAGCCTC
GATGGTGAGCCACTGGAGAATCCCCAAACACCGCTATACAAGGAACCCGC
TTGCGTCGAGGCGGAAGAACAGCTCGATCGGACAATTGCTGTCGAGGGAG
CGTCGGTAGCCAACATAAACAACGGGTTAGGAAACGAAGAACCACGGAAC
GACAAGAATAGCGTCAGCAATCAGCAAATATCGGAGCAAAAACAGCAAAA
CGAACGAGTTAGATCTTTGCGCGAGCGCCCCTCGTCGGAGCCCTTACCAT
TAGGTCGTCGCAGCACCACTTGCAACAGTGGAAGCGGCAGCAGCCGTCAG
ATCAGCGACAAGGGAGCTACCAAAATCAGTGACGGTGAGAGCGTATCCTC
TTCCTGCTCGACATCAAACCGCGGTCCGGGTAACAAAAATAGCAAGGACG
AGATCATCAAGCGACTGGAACACGAGCTACGATCTCTACGGAAGGAGGGC
AGCGGCTCAGCGTGGCAAAAATGCAAATCCCTGTCCAACGGAGTCGCGGT
GGCAAAGGGCAGCCACGGAAGTGGACGGGCCACCCCCCATTCGTGGCCGG
GCTCTGCTGCAGAGCGCGGAGGGGCCAACCACACTCGCGCTAGAACACGG
AGCAGGCGGGGGACGATAAGATATCGACGGCACCGCCTCGCTGCGCTTAC
ACAAGGACACAAACAAGCCGGACCGACAGCTGTTCCACGATGATATCGAG
GGGAGCAAGCCCAAGATGAAATCGCGTTTCCAAACAAACCGCCGCGTCAA
CCCTTTAGAACCGGAGTACATCCTTCCATCCTATGTCCCAGCACCTAACG
TATGCCCAAAGTTTACTCGGGACTCCTACGATGTCTCGGATATTGAAGGT
ACGAAGAGTCGACCACTCTACCGATTTGCTGAACGCAAAAACCACTTTAT
AGATGACATCGAGGGAGCGCAGTGTGGCTGGAAGCCGAGGCACTCGCAGG
CTCGTCATAATGCCCCACCCCTGGATCATTGTTTAAACGTCGGCGACATC
ACTGGTGGCGACTTTCGCACAAGGCGCACGACGAACCCGTTGACCCCCTC
GTATCGAGTGAATGGTATGGATATCGCCGACGATCCTGTGGCATCGAGGC
CGCGCTCTTTGCCAAAGGCAAGGGATGGACCTTTCTACCCTCTCACAACG
GTCGACATCGAAGGTGCGCAGCCAGGCTGGCGTCCAATGCCACAGGTAAA
CCCTCCTCTGGAAACGCGGCGACACTTCCGAAATACCAATTTTGTGGGAG
ATATTCCTGGAGCACAGGCGGACACCGTGGAGCATTCCATCTGCACAGAT
CGTCACATCAACCCTCTATACCCTCTGTACGCTAGCCTCGATGGTGAGCC
ACTGGAGAATCCCCAAACACCGCTATACAAGGAACCCGCTTGCGTCGAGG
CGGAAGAACAGCTCGATCGGACAATTGCTGTCGAGGGAGCGTCGGTAGCC
AACATAAACAACGGGTTAGGAAACGAAGAACCACGGAACGACAAGAATAG
CGTCAGCAATCAGCAAATATCGGAGCAAAAACAGCAAAACGAACGAGTTA
GATCTTTGCGCGAGCGCCCCTCGTCGGAGCCCTTACCATTAGGTCGTCGC
AGCACCACTTGCAACAGTGGAAGCGGCAGCAGCCGTCAGATCAGCGACAA
GGGAGCTACCAAAATCAGTGACGGTGAGAGCGTATCCTCTTCCTGCTCGA
CATCAAACCGCGGTCCGGGTAACAAAAATAGCAAGGACGAGATCATCAAG
CGACTGGAACACGAGCTACGATCTCTACGGAAGGAGGGCAGCGGCTCAGC
GTGGCAAAAATGCAAATCCCTGTCCAACGGAGTCGCGGTGGCAAAGGGCA
GCCACGGAAGTGGACGGGCCACCCCCCATTCGTGGCCGGGCTCTGCTGCA
GAGCGCGGAGGGGCCAACCACACTCGCGCTAGAACACGGAGCAGGCGGGG
GACGATAAAGGCTGGTTGGGGGGCAATGGAGATTCGGTCCTGCGGTGAGC
AGGTTAGTGGCGGCAATGAGCGTGCAGAGCGATTGGTGTTGCGTAGCGCT
AATGGTACGCCGCGGGTGCCCCTGACTCCGGCCGAGATGAGAGTAGCTCG
GGAATACGTCGATGATGTGAGCTCTGTACGTGACCTTGTCTGAAGGCTGG
TTGGGGGGCAATGGAGATTCGGTCCTGCGGTGAGCAGGTTAGTGGCGGCA
ATGAGCGTGCAGAGCGATTGGTGTTGCGTAGCGCTAATGGTACGCCGCGG
GTGCCCCTGACTCCGGCCGAGATGAGAGTAGCTCGGGAATACGTCGATGA
TGTGAGCTCTGTACGTGACCTTGTCTGA
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