mRNA_H-paniculata_contig15149.3043.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15149.3043.1
Unique NamemRNA_H-paniculata_contig15149.3043.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15149.3043.1 vs. uniprot
Match: A0A6H5K262_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K262_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 4.040e-37
Identity = 70/86 (81.40%), Postives = 78/86 (90.70%), Query Frame = 1 
Query:    1 PVTTGDDDGAADPRPEARVIMLCGPPGLGKTTLAQVVARHAGYRVYEINASDDRSASVLRKRMTEAMEGSTLLADKRPNLIVLDEV 258
            P++      A D RPEAR+IMLCGPPGLGKTTLAQVVA+HAGYRVYEINASDDR+ASVLR+R+TEAMEG+TLLADKRPNLIVLDEV
Sbjct:  344 PLSMASKGDATDKRPEARIIMLCGPPGLGKTTLAQVVAKHAGYRVYEINASDDRTASVLRQRVTEAMEGNTLLADKRPNLIVLDEV 429
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BLAST of mRNA_H-paniculata_contig15149.3043.1 vs. uniprot
Match: F0W2X1_9STRA (Chromosome transmission fidelity protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W2X1_9STRA)

HSP 1 Score: 107 bits (266), Expect = 4.150e-25
Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:    1 PVTTGDDDGAADPRPEARVIMLCGPPGLGKTTLAQVVARHAGYRVYEINASDDRSASVLRKRMTEAMEGSTLLADKRPNLIVLDEV 258
            PV T   D   D RP+ ++I+LCGPPG GKTTLA ++A+HAGY   EINASDDR+A VLR ++  AME  +L  DKRPN I+LDE+
Sbjct:  278 PVNTSKTDRHLDARPKVKIILLCGPPGAGKTTLAHIIAKHAGYNAVEINASDDRTAQVLRNKIISAMEMQSLHKDKRPNCIILDEI 363
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BLAST of mRNA_H-paniculata_contig15149.3043.1 vs. uniprot
Match: A0A4D9CU49_9STRA (AAA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU49_9STRA)

HSP 1 Score: 106 bits (265), Expect = 5.700e-25
Identity = 50/74 (67.57%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:   37 PRPEARVIMLCGPPGLGKTTLAQVVARHAGYRVYEINASDDRSASVLRKRMTEAMEGSTLLADKRPNLIVLDEV 258
            P P AR I+L GPPG+GKTTLA V+A H GYR  EINASDDRSA  LR++MT AME   +L DKRPN I+LDEV
Sbjct:  448 PEPSARAILLAGPPGIGKTTLAHVIAEHCGYRPLEINASDDRSAGALREKMTRAMENQAVLGDKRPNCIILDEV 521
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BLAST of mRNA_H-paniculata_contig15149.3043.1 vs. uniprot
Match: W7TIW5_9STRA (Chromosome transmission fidelity n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIW5_9STRA)

HSP 1 Score: 103 bits (258), Expect = 4.940e-24
Identity = 48/73 (65.75%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:   37 PRPEARVIMLCGPPGLGKTTLAQVVARHAGYRVYEINASDDRSASVLRKRMTEAMEGSTLLADKRPNLIVLDE 255
            P P AR I+L GPPG+GKTTLA V+A H GYR  EINASDDRSA  LR++MT AM+   +L DKRPN I+LDE
Sbjct:   47 PEPSARAILLAGPPGIGKTTLAHVIAEHCGYRPLEINASDDRSAGALREKMTRAMQNQAVLGDKRPNCIILDE 119
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BLAST of mRNA_H-paniculata_contig15149.3043.1 vs. uniprot
Match: A0A024GMS5_9STRA (AAA domain-containing protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GMS5_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.730e-23
Identity = 49/85 (57.65%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:    4 VTTGDDDGAADPRPEARVIMLCGPPGLGKTTLAQVVARHAGYRVYEINASDDRSASVLRKRMTEAMEGSTLLADKRPNLIVLDEV 258
            V T   D   D RP+ ++I+LCGPPG GKTTLA ++ARHAGY   EINASDDR+A +LR ++  AME  +L  DKRPN I+LDE+
Sbjct:  270 VDTSKTDTHHDARPKYKIILLCGPPGTGKTTLAHIIARHAGYNPIEINASDDRTAQLLRNKIISAMEMQSLHKDKRPNCIILDEI 354
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BLAST of mRNA_H-paniculata_contig15149.3043.1 vs. uniprot
Match: A0A0P1AJX5_PLAHL (Chromosome transmission fidelity protein 18 homolog isoform x1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJX5_PLAHL)

HSP 1 Score: 102 bits (254), Expect = 1.730e-23
Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:    7 TTGDDDGAADPRPEARVIMLCGPPGLGKTTLAQVVARHAGYRVYEINASDDRSASVLRKRMTEAMEGSTLLADKRPNLIVLDEV 258
            T GDD+   D RP  ++I++CGPPG GKTTLA +VARHAGY   E+NASDDR+ASVLR ++  AME  ++  ++RPN I+LDE+
Sbjct:  297 TDGDDE---DKRPLIKIILICGPPGSGKTTLANIVARHAGYNPIEVNASDDRTASVLRNKIVSAMEMQSIWGERRPNCIILDEI 377
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BLAST of mRNA_H-paniculata_contig15149.3043.1 vs. uniprot
Match: A0A6G0XG15_9STRA (AAA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XG15_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.380e-23
Identity = 45/77 (58.44%), Postives = 60/77 (77.92%), Query Frame = 1 
Query:   28 AADPRPEARVIMLCGPPGLGKTTLAQVVARHAGYRVYEINASDDRSASVLRKRMTEAMEGSTLLADKRPNLIVLDEV 258
            A D RPE ++I++CGPPG GKTTLA + ARHAGY   EINASDDR+A VL++++  AME  ++  D+RPN I+LDE+
Sbjct:  221 AGDMRPEQKIILICGPPGAGKTTLAGIAARHAGYNPIEINASDDRTAGVLKEKIISAMEMQSIFGDQRPNCIILDEI 297
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BLAST of mRNA_H-paniculata_contig15149.3043.1 vs. uniprot
Match: A0A421F668_9STRA (AAA domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F668_9STRA)

HSP 1 Score: 100 bits (250), Expect = 5.990e-23
Identity = 45/84 (53.57%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:    7 TTGDDDGAADPRPEARVIMLCGPPGLGKTTLAQVVARHAGYRVYEINASDDRSASVLRKRMTEAMEGSTLLADKRPNLIVLDEV 258
            T  D+D   D RP  ++I++CGPPG GKTTLA +VARHAGY   E+NASDDR+ SVLR ++  AME  ++  +++PN I+LDE+
Sbjct:  287 TQKDNDDVEDKRPINKIILICGPPGAGKTTLANIVARHAGYNPIEVNASDDRTPSVLRNKLISAMEMQSIFGERKPNCIILDEI 370
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BLAST of mRNA_H-paniculata_contig15149.3043.1 vs. uniprot
Match: A0A2D4BXK8_PYTIN (Chromosome transmission fidelity protein, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXK8_PYTIN)

HSP 1 Score: 100 bits (250), Expect = 6.030e-23
Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:   34 DPRPEARVIMLCGPPGLGKTTLAQVVARHAGYRVYEINASDDRSASVLRKRMTEAMEGSTLLADKRPNLIVLDEV 258
            DPRP  ++I+LCGPPG GKTTLA +VARHAGY   EINASDDR+  VL+ ++  AME  ++  D++PN I+LDE+
Sbjct:  331 DPRPREKIILLCGPPGAGKTTLANIVARHAGYNPIEINASDDRTTGVLKNKIISAMEMQSIWGDRKPNCIILDEI 405
[Close]
BLAST of mRNA_H-paniculata_contig15149.3043.1 vs. uniprot
Match: A0A8K1FLV3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLV3_PYTOL)

HSP 1 Score: 100 bits (249), Expect = 8.210e-23
Identity = 43/75 (57.33%), Postives = 59/75 (78.67%), Query Frame = 1 
Query:   34 DPRPEARVIMLCGPPGLGKTTLAQVVARHAGYRVYEINASDDRSASVLRKRMTEAMEGSTLLADKRPNLIVLDEV 258
            DPRP  ++I+LCGPPG GK+TLA +VARHAGY   E+NASDDR+A VL+ ++  AME  ++  D++PN I+LDE+
Sbjct:  292 DPRPREKIILLCGPPGAGKSTLASIVARHAGYNPIEVNASDDRTAGVLKNKIISAMEMQSIWGDRKPNCIILDEI 366
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15149.3043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K262_9PHAE4.040e-3781.40AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
F0W2X1_9STRA4.150e-2558.14Chromosome transmission fidelity protein putative ... [more]
A0A4D9CU49_9STRA5.700e-2567.57AAA domain-containing protein n=1 Tax=Nannochlorop... [more]
W7TIW5_9STRA4.940e-2465.75Chromosome transmission fidelity n=2 Tax=Nannochlo... [more]
A0A024GMS5_9STRA1.730e-2357.65AAA domain-containing protein n=2 Tax=Albugo candi... [more]
A0A0P1AJX5_PLAHL1.730e-2357.14Chromosome transmission fidelity protein 18 homolo... [more]
A0A6G0XG15_9STRA4.380e-2358.44AAA domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A421F668_9STRA5.990e-2353.57AAA domain-containing protein n=4 Tax=Phytophthora... [more]
A0A2D4BXK8_PYTIN6.030e-2358.67Chromosome transmission fidelity protein, putative... [more]
A0A8K1FLV3_PYTOL8.210e-2357.33Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15149contigH-paniculata_contig15149:5178..6031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue3.1e-32
Seed eggNOG ortholog2880.D7FQ00
Preferred nameCHTF18
KEGG koko:K11269
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000785,GO:0000790,GO:0000819,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007131,GO:0007140,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010604,GO:0016043,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031390,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035753,GO:0035825,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043570,GO:0043596,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045005,GO:0045935,GO:0046483,GO:0048232,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051321,GO:0051338,GO:0051347,GO:0051704,GO:0051716,GO:0051983,GO:0051985,GO:0060255,GO:0061982,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0098813,GO:0140013,GO:0140014,GO:1900262,GO:1900264,GO:1901360,GO:1901576,GO:1903046,GO:1903047,GO:2000112,GO:2000278,GO:2000573
EggNOG free text desc.ATP binding
EggNOG OGsKOG1969@1,KOG1969@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929214.252986-CDS-H-paniculata_contig15149:5177..52311622929214.252986-CDS-H-paniculata_contig15149:5177..5231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15149 5178..5231 +
1691480773.2028222-CDS-H-paniculata_contig15149:5177..52311691480773.2028222-CDS-H-paniculata_contig15149:5177..5231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15149 5178..5231 +
1622929214.2633164-CDS-H-paniculata_contig15149:5827..60311622929214.2633164-CDS-H-paniculata_contig15149:5827..6031Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15149 5828..6031 +
1691480773.2156677-CDS-H-paniculata_contig15149:5827..60311691480773.2156677-CDS-H-paniculata_contig15149:5827..6031Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15149 5828..6031 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15149.3043.1prot_H-paniculata_contig15149.3043.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15149 5178..6031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15149.3043.1

>prot_H-paniculata_contig15149.3043.1 ID=prot_H-paniculata_contig15149.3043.1|Name=mRNA_H-paniculata_contig15149.3043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
PVTTGDDDGAADPRPEARVIMLCGPPGLGKTTLAQVVARHAGYRVYEINA
SDDRSASVLRKRMTEAMEGSTLLADKRPNLIVLDEV
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mRNA from alignment at H-paniculata_contig15149:5178..6031+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15149.3043.1 ID=mRNA_H-paniculata_contig15149.3043.1|Name=mRNA_H-paniculata_contig15149.3043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=854bp|location=Sequence derived from alignment at H-paniculata_contig15149:5178..6031+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGTGACGACGGGGGACGACGATGGTGCTGCAGATCCGAGACCAGAGGC
CAGGGTAAGTAACGAACGAGGCCGACAAAAAAAGAGAGAGGGAAATTAGT
TCCTTCGTTACGTTTTTTTTTTTTTTGGTGTATACGTGTTTTTTGGAAAA
GTAATACCTCCATTAGAAAAGAAGTACAAATTTCACACAGTTTGGTTGTA
GAGGACGATATATATATACATATATATTTTTCTTGTTACTCGGAAGTCGG
CTTTACTCTCCTTCAGTTTTATCGTTGTAGATGTGGTGATCATATGTCGT
GTGTGCCTGGTCGAAGAGGCGCGTGATTCCAATCTACTCGGTCATGATGA
GGTCAAGACGTGTATATCATGTGAGCGATGGGTACCCTATTAATGTACAC
ATATGTAGACACAACGTTATGCGTATCCTGACAGTACTCCCTGCTTGCTG
TCTGATGTGTCACACTGCTATTCTTCGAGGGGTGTCCCGGATTATTTTTT
CACCTCGCCGCCGCTAACATTTAGCCACGACCAGAAATTGAAGCAACACT
AGAAACACGAAATGTTACAGTTTGTACACTTGAAAGAAAAACTTGAATTG
ACCTGAAGGGTATATAACTATTGGTACACTGGAACATGTATTGGCACCAG
GTGATCATGCTCTGTGGTCCCCCAGGGCTGGGAAAGACTACCCTGGCCCA
GGTGGTGGCGCGGCATGCGGGCTACCGCGTGTACGAGATCAACGCGAGCG
ACGACCGCAGTGCGTCCGTATTGCGAAAAAGGATGACGGAGGCTATGGAG
GGAAGCACCCTGCTGGCCGACAAACGGCCCAATCTTATCGTCTTGGACGA
GGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig15149:5178..6031+

>mRNA_H-paniculata_contig15149.3043.1 ID=mRNA_H-paniculata_contig15149.3043.1|Name=mRNA_H-paniculata_contig15149.3043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig15149:5178..6031+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGTGACGACGGGGGACGACGATGGTGCTGCAGATCCGAGACCAGAGGC
CAGGCCCGTGACGACGGGGGACGACGATGGTGCTGCAGATCCGAGACCAG
AGGCCAGGGTGATCATGCTCTGTGGTCCCCCAGGGCTGGGAAAGACTACC
CTGGCCCAGGTGGTGGCGCGGCATGCGGGCTACCGCGTGTACGAGATCAA
CGCGAGCGACGACCGCAGTGCGTCCGTATTGCGAAAAAGGATGACGGAGG
CTATGGAGGGAAGCACCCTGCTGGCCGACAAACGGCCCAATCTTATCGTC
TTGGACGAGGTGGTGATCATGCTCTGTGGTCCCCCAGGGCTGGGAAAGAC
TACCCTGGCCCAGGTGGTGGCGCGGCATGCGGGCTACCGCGTGTACGAGA
TCAACGCGAGCGACGACCGCAGTGCGTCCGTATTGCGAAAAAGGATGACG
GAGGCTATGGAGGGAAGCACCCTGCTGGCCGACAAACGGCCCAATCTTAT
CGTCTTGGACGAGGTG
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