mRNA_H-paniculata_contig1509.3020.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1509.3020.1
Unique NamemRNA_H-paniculata_contig1509.3020.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1509.3020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1509contigH-paniculata_contig1509:2352..6184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1054
Cds size579
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1509.3020.1prot_H-paniculata_contig1509.3020.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1509 3119..5874 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929210.5407507-UTR-H-paniculata_contig1509:2351..24261622929210.5407507-UTR-H-paniculata_contig1509:2351..2426Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1509 2352..2426 +
1691480771.6535223-UTR-H-paniculata_contig1509:2351..24261691480771.6535223-UTR-H-paniculata_contig1509:2351..2426Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1509 2352..2426 +
1622929210.560871-UTR-H-paniculata_contig1509:3028..31181622929210.560871-UTR-H-paniculata_contig1509:3028..3118Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1509 3029..3118 +
1691480771.6636612-UTR-H-paniculata_contig1509:3028..31181691480771.6636612-UTR-H-paniculata_contig1509:3028..3118Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1509 3029..3118 +
1622929210.65417-UTR-H-paniculata_contig1509:5874..61841622929210.65417-UTR-H-paniculata_contig1509:5874..6184Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1509 5875..6184 +
1691480771.7112753-UTR-H-paniculata_contig1509:5874..61841691480771.7112753-UTR-H-paniculata_contig1509:5874..6184Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1509 5875..6184 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929210.576173-CDS-H-paniculata_contig1509:3118..31861622929210.576173-CDS-H-paniculata_contig1509:3118..3186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1509 3119..3186 +
1691480771.6728334-CDS-H-paniculata_contig1509:3118..31861691480771.6728334-CDS-H-paniculata_contig1509:3118..3186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1509 3119..3186 +
1622929210.591301-CDS-H-paniculata_contig1509:4166..43891622929210.591301-CDS-H-paniculata_contig1509:4166..4389Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1509 4167..4389 +
1691480771.6824656-CDS-H-paniculata_contig1509:4166..43891691480771.6824656-CDS-H-paniculata_contig1509:4166..4389Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1509 4167..4389 +
1622929210.6053288-CDS-H-paniculata_contig1509:5586..58741622929210.6053288-CDS-H-paniculata_contig1509:5586..5874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1509 5587..5874 +
1691480771.6920931-CDS-H-paniculata_contig1509:5586..58741691480771.6920931-CDS-H-paniculata_contig1509:5586..5874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1509 5587..5874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1509.3020.1

>prot_H-paniculata_contig1509.3020.1 ID=prot_H-paniculata_contig1509.3020.1|Name=mRNA_H-paniculata_contig1509.3020.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=193bp
MEDAKRDSDDNVGIAMALHSFGRCLREINRPDEAVKYLRRALAIAEAILG
RSDVHVAAILHTLAASIQDTGRPEEAEGLLVRTLEIEQAKLGPHGIQVGD
TLHELGNCVRAIGGREEEAQRYFKLASQQVDRGILNPSARWINGPDGTQQ
WRGEIGYPTEDEQPYANPPSSHNADGTTSELPMVSRLSGSTE*
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mRNA from alignment at H-paniculata_contig1509:2352..6184+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1509.3020.1 ID=mRNA_H-paniculata_contig1509.3020.1|Name=mRNA_H-paniculata_contig1509.3020.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3833bp|location=Sequence derived from alignment at H-paniculata_contig1509:2352..6184+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAATACTTCCGGCGAGCACTGCACCTCAAGGTGGCCGTGCAGGCACG
GAAGGATTGCAAGGAAGATCCGCAGGTTAGCCTACGATGAATGGGAAATT
TAGCCTTGCACTCCCGCGATGGAGCTCGTACAGAACTGGGAGGCTCGGTC
ATTCCCTCGATGTTTTGCGATGGGGTGCGTTGCTTTTCCCTCTGATGGTG
ACTTGCTCAATGACGTGAAGAGGATCAGACAGGGCGTTGATAGGCGCGTC
CTACCAAACGCATCACCGGAGATTCTGCTTCGCCATCTCCTCGTACATCC
TTGTCTGGCACAACAATACCTGGAAGAATATTTTGTCCTGTGATAAAATT
ATTGGATGGTACAAAGATCATGCCCGGGAATGGGGGGAGGGGTAGTAGAT
CTATAACGGCTCGTAAAATAACTCCATCGTACCCATGTTGAGGCCGTGCA
GCTAATCCAATTTTTCGGCTTCGTATACTTACAATATCAGCAGGAAGTTG
GCTTAAAGAACGGGAGTGCAGGTTTTCCTACCCTCGGGGAAGTATTCCGC
ATCAACACCGCATATATCCCCTCTCGATTCATTCCGTTCTTTCTTCGCGG
TTTATTAAGACGGCGAGCGGCAGAATTTGATTGTGATATCCTTGTTTTCC
CGCCGTCGCACATGGATGTCGAACCAGGTAGCGTTGACACTATACGAACT
GGGACGATGTGTCAGGGAAGCTGGCAGGCCCGCAGAAGCAGCACAGCACC
TGAAGCAAGCGCTCGAGATGGAGGATGCGAAGCGCGACTCTGACGACAAT
GTGGGCATAGCCATGGCCCTCCATTCCTTTGGCAGGTGCAGTGAAATGTC
TGAACATGTGTTCCTGATAAAAAGCACGTCCATCCCCGACCGTTTCCAAG
TACACCACGGTAATGGGATAGACACGCGTGAAGGCAGGATCGCTGATAAT
ACACTGATGGCAATACTCCGCTTTTATTGAAGCACGATTGACTGTGACTA
CCTGCCTCCTTCCTTGCAAAATTGTTGTGTATTGCGGAATTCACTTTTCC
CGTTGCGACCACTTGGGACGTTTTCGTCTTCCGATGTCAAGCCCGTAGTC
AATGGTGTAATAGGGGCGAGTGATTACAAAGCTTTTAAATTTTCGGCACG
CACAACTTACGTACGGGAGCGGGGAGACCAGTACCCAGACGAAAATGGGG
CGGGTATGCTCGAAACTCCTCATATTTCTTCCTGCACGCACAGCTATTGA
TGCTGCTGGCGTCTGCAGGTGACTGAGGTGCGAGAATTACGAGAAACGCC
TACGAATAGTTCCTCCGTTGTACCCACTTTTCGATATAGTTTTGCTGATA
AGTCTGTACACAACTAAACCTTGAACCCAGCTGCAGAAGCTCAACACAGA
TACGACGGAGGTGTTTTACCGGCGTGATTATGTGGTTTTATTAACTGTGG
CACGTGGGTTGAATTGTTGTGAAGGAGGTTTGCGGTTGGGGAACGAGGTA
GTTCTTTTTTTCACGTATTCACGTGAAGGTAATCTTATATTACGCGCAGT
ACTCTCGCGAGTGATACAGCCATACTTCCCTCTGAAGCTAGTAGCCTATG
ACGTATCGTTTACTCCCCCTTCCCCCTCCACTGGCAAAGCATTTTTGAGC
CATATTTGACAAAGTAGGAAAAAGCAGTTGACCATCGGAAATCAATATAA
TAGGAGCAAAGTCCTTTCTCCCGAAGACGCGTGGTCAATGATCTAACCAT
GGCATGCAAAGCACGAGTACGCCCCCCGCCGTTGCGACCTCAATCTGCCG
TGACCGACTCGACAGGTGCCTTCGAGAGATCAACCGCCCTGACGAAGCTG
TGAAGTACCTGCGGCGAGCGTTGGCGATCGCCGAGGCGATCCTCGGCAGG
TCTGATGTGCACGTAGCAGCCATACTGCATACACTGGCGGCAAGCATTCA
AGATACGGGGCGACCCGAGGAAGCGGAGGGCCTTCTCGTGAGAACGCTCG
AGATCGAGCAGGCGAAGCTGGGCCCTCACGGGATTCAGGTAGTTGTGAAA
GCCATGCACCGATCCAGGGGTGCATGACGTTTAATAGTCAGTACAAGTAC
ACGATCTGTAGGCTGTTTGGTGATCAGTCCCATATAGTGCGATCCGATAT
CGGCGATCAGTTAGTGAATGCCGATGACTCAACAACCGGGTACAGATTTT
CATTCTTCAAGCGTTGTTGTGTTTTACGGTAAGACGAAAAATACGGGTCA
CAGCTTAGTGCAGGCCGCTGTATCACCACGCCGTACTCTTTCGCTGCATG
GCTCTTACTCGTCGTCCCGTCCGATATACCACCTACTACTATTATAGAAT
TATCCACATCTGTCAAGGCAAGTGTAGGACCGGGGTGGGGGGGAGGGGTG
GCGGGTGGGATAGGGGTGATTCAGGATTCATGTGCGGTCGGAAGTCCTAA
CGTCACGTCATTCTCGTCGATGTAGGGCGTTCTATACTAGGTCGTTTTTT
GTCCGCTTTTTCCGTTTCCCGAAAAATGGAAAACGCGGCAGCGAGCTGAA
CAAATTAACGACTGTGACCAAGTGCACCAGACGTATAAGGGCAACGTGCT
GTACGGTGTTTCCGCAGCTTTCCCTCCATTTTGAGCTCGATATCGCGATT
TCCACTTTTCGGAAAAAGGAAAGACGGAAAAAAGCAGACAAAACACGGAC
TAGGTTAGAACGCATCCAGGGCATGAAGCGATTTCCCCTCGCCACCGAAG
TCCGCCAGACAAGCTGTAAACGAGAGGAGACACTTGTATGCACATCTAAA
TACAATGACTCTGGTTGATGCGTAGTAATTGCGACGAGTTTACCTGCTTC
TGAATAATTTATGTTCGACCGACTTGGTGTGACGGAAGGCGGCACACGGC
AGTAGACGGGCTGCATTGACTATGTATATAGTAGCGTCACCAAACATCTC
AACCCAGTAGATAGCTACCGTAAAACCCGGAGGTAGCGGGGTGCGAACGG
TTTTCACGTGTATCTCGAACACGACGGCGTTACCGACAACGAGCAGTGTG
CCGTTGGAAAGATCTTGGGGAGATCTGTCGGCTGATGGATTCTTTCGACA
GCCCAACGTCTCCGTTCTTGAGATAGTTGCGTTTGAAAAAGGTTCGCACC
CCGATGATAGCGATACCTCCGGGTTTTACGGTAGGCCATGAGAGACATTA
CTAAAGCGCTCAATTCGCCGTCTGGGTCGATCCAGGTGGGGGACACTTTG
CACGAACTCGGCAACTGCGTTCGCGCCATCGGCGGAAGAGAAGAAGAAGC
TCAGCGGTACTTCAAGCTCGCCTCGCAACAGGTCGATAGGGGCATTTTGA
ACCCTTCAGCACGGTGGATTAATGGTCCAGATGGGACACAACAGTGGCGT
GGTGAAATAGGATACCCCACCGAAGATGAACAACCCTATGCAAACCCACC
ATCGTCTCACAACGCTGACGGCACTACTTCTGAGCTGCCCATGGTTTCGA
GATTGTCCGGCAGCACAGAGTAGCTTTAATGCTCCTGTCTGCCGTTTTAC
AGATACGCTTGCGCGTGTGGGAGAGTGCTGTTGTTTTACAGCCGTTTGCC
GAGGTGGTGGTGTCGCACACGTTGTGTGCGGGCGACCAAACGAAGCGTGA
CCGTTTGCTCGAGACTAGCTCGTTGTGATGCTATTTCGAGGGCGATGTCC
AGAGGAATTGTTGTACTGGTGGGGCAGCACACGTCTTTTGCTAGTGTGTG
ATCGTTCTTCGTGTTTGTCTGCGTTGGGTGCTTCTGAGGGAATCGATTTA
TTTACGCGTTCTGCCTCAGCGACTTGTTGCCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1509:2352..6184+

>mRNA_H-paniculata_contig1509.3020.1 ID=mRNA_H-paniculata_contig1509.3020.1|Name=mRNA_H-paniculata_contig1509.3020.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at H-paniculata_contig1509:2352..6184+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGATGCGAAGCGCGACTCTGACGACAATGTGGGCATAGCCATGGC
CCTCCATTCCTTTGGCAGATGGAGGATGCGAAGCGCGACTCTGACGACAA
TGTGGGCATAGCCATGGCCCTCCATTCCTTTGGCAGGTGCCTTCGAGAGA
TCAACCGCCCTGACGAAGCTGTGAAGTACCTGCGGCGAGCGTTGGCGATC
GCCGAGGCGATCCTCGGCAGGTCTGATGTGCACGTAGCAGCCATACTGCA
TACACTGGCGGCAAGCATTCAAGATACGGGGCGACCCGAGGAAGCGGAGG
GCCTTCTCGTGAGAACGCTCGAGATCGAGCAGGCGAAGCTGGGCCCTCAC
GGGATTCAGGTGCCTTCGAGAGATCAACCGCCCTGACGAAGCTGTGAAGT
ACCTGCGGCGAGCGTTGGCGATCGCCGAGGCGATCCTCGGCAGGTCTGAT
GTGCACGTAGCAGCCATACTGCATACACTGGCGGCAAGCATTCAAGATAC
GGGGCGACCCGAGGAAGCGGAGGGCCTTCTCGTGAGAACGCTCGAGATCG
AGCAGGCGAAGCTGGGCCCTCACGGGATTCAGGTGGGGGACACTTTGCAC
GAACTCGGCAACTGCGTTCGCGCCATCGGCGGAAGAGAAGAAGAAGCTCA
GCGGTACTTCAAGCTCGCCTCGCAACAGGTCGATAGGGGCATTTTGAACC
CTTCAGCACGGTGGATTAATGGTCCAGATGGGACACAACAGTGGCGTGGT
GAAATAGGATACCCCACCGAAGATGAACAACCCTATGCAAACCCACCATC
GTCTCACAACGCTGACGGCACTACTTCTGAGCTGCCCATGGTTTCGAGAT
TGTCCGGCAGCACAGAGTAGGTGGGGGACACTTTGCACGAACTCGGCAAC
TGCGTTCGCGCCATCGGCGGAAGAGAAGAAGAAGCTCAGCGGTACTTCAA
GCTCGCCTCGCAACAGGTCGATAGGGGCATTTTGAACCCTTCAGCACGGT
GGATTAATGGTCCAGATGGGACACAACAGTGGCGTGGTGAAATAGGATAC
CCCACCGAAGATGAACAACCCTATGCAAACCCACCATCGTCTCACAACGC
TGACGGCACTACTTCTGAGCTGCCCATGGTTTCGAGATTGTCCGGCAGCA
CAGAGTAG
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