mRNA_H-paniculata_contig15042.2997.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15042.2997.1
Unique NamemRNA_H-paniculata_contig15042.2997.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15042.2997.1 vs. uniprot
Match: A0A6H5JD51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD51_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 2.790e-55
Identity = 93/104 (89.42%), Postives = 97/104 (93.27%), Query Frame = 1 
Query:    1 QVDPSPQCEGVFQLFDNDRSGQIDVREFMISLTNFAGTSKDDKLSFAFKVFDEDGNGVITKQEASLTRILKANHMAQTEAEVARKTETIMAQADKDGDGVVTFD 312
            QVDPSPQCEG+FQLFD DRSGQIDVREFMISLTNFAG SKDDKL FAF +FDEDGNGVITKQE  L RILKANHMAQ+EAEVARKT+TIMAQADKDGDGVVTFD
Sbjct:  225 QVDPSPQCEGLFQLFDGDRSGQIDVREFMISLTNFAGASKDDKLKFAFMIFDEDGNGVITKQE--LARILKANHMAQSEAEVARKTDTIMAQADKDGDGVVTFD 326
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BLAST of mRNA_H-paniculata_contig15042.2997.1 vs. uniprot
Match: D7FII4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FII4_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 5.270e-52
Identity = 93/104 (89.42%), Postives = 97/104 (93.27%), Query Frame = 1 
Query:    1 QVDPSPQCEGVFQLFDNDRSGQIDVREFMISLTNFAGTSKDDKLSFAFKVFDEDGNGVITKQEASLTRILKANHMAQTEAEVARKTETIMAQADKDGDGVVTFD 312
            QVDPSPQCEG+FQLFD DRSGQIDVREFMISLTNFAG SKDDKL FAF +FDEDGNGVITKQE  L RILKANHMAQ+EAEVARKT+TIMAQADKDGDGVVTFD
Sbjct:  643 QVDPSPQCEGLFQLFDGDRSGQIDVREFMISLTNFAGASKDDKLKFAFMIFDEDGNGVITKQE--LARILKANHMAQSEAEVARKTDTIMAQADKDGDGVVTFD 744
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BLAST of mRNA_H-paniculata_contig15042.2997.1 vs. uniprot
Match: A0A6A3NZV5_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NZV5_9STRA)

HSP 1 Score: 158 bits (399), Expect = 8.590e-43
Identity = 77/104 (74.04%), Postives = 91/104 (87.50%), Query Frame = 1 
Query:    1 QVDPSPQCEGVFQLFDNDRSGQIDVREFMISLTNFAGTSKDDKLSFAFKVFDEDGNGVITKQEASLTRILKANHMAQTEAEVARKTETIMAQADKDGDGVVTFD 312
            QVDPSPQCE VFQLFDND++G+IDVREFMI+L+NF G  K++KL FAF VFDEDGNGVIT+QE  L +ILKANHMA  E+EVARK +TIM+Q DKDGDGV++FD
Sbjct:  732 QVDPSPQCEKVFQLFDNDKTGRIDVREFMIALSNFTGAEKEEKLKFAFLVFDEDGNGVITRQE--LMKILKANHMASNESEVARKADTIMSQGDKDGDGVISFD 833
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BLAST of mRNA_H-paniculata_contig15042.2997.1 vs. uniprot
Match: A0A835ZJR9_9STRA (Putative calcineurin subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJR9_9STRA)

HSP 1 Score: 154 bits (388), Expect = 2.270e-42
Identity = 84/111 (75.68%), Postives = 92/111 (82.88%), Query Frame = 1 
Query:    1 QVDPSPQCEGVFQLFDNDR--SGQIDVREFMISLTNFAGTSK-----DDKLSFAFKVFDEDGNGVITKQEASLTRILKANHMAQTEAEVARKTETIMAQADKDGDGVVTFD 312
            QVDPSPQCEGVFQLFD DR  SGQIDVREFMISL +++G +K     +DKL FAF VFDEDGNGVITK E  L RILKANHMA ++AEVARK +TIM QADKDGDGVVTFD
Sbjct:  379 QVDPSPQCEGVFQLFDYDRIRSGQIDVREFMISLAHYSGATKASQHREDKLKFAFMVFDEDGNGVITKAE--LVRILKANHMATSDAEVARKADTIMNQADKDGDGVVTFD 487
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BLAST of mRNA_H-paniculata_contig15042.2997.1 vs. uniprot
Match: A0A662YEB8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YEB8_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.410e-40
Identity = 73/104 (70.19%), Postives = 89/104 (85.58%), Query Frame = 1 
Query:    1 QVDPSPQCEGVFQLFDNDRSGQIDVREFMISLTNFAGTSKDDKLSFAFKVFDEDGNGVITKQEASLTRILKANHMAQTEAEVARKTETIMAQADKDGDGVVTFD 312
            QVDPSP  E VFQLFDN+R+G++DVREFMI+L+NF+G  K++KL FAF VFDEDGNGVIT+QE  L +ILKANHMA  + EVARK +TIM+Q DKDGDGV++FD
Sbjct:  416 QVDPSPLSEKVFQLFDNERAGRVDVREFMIALSNFSGAEKEEKLKFAFLVFDEDGNGVITRQE--LLKILKANHMASNDGEVARKADTIMSQGDKDGDGVISFD 517
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BLAST of mRNA_H-paniculata_contig15042.2997.1 vs. uniprot
Match: A0A0P1AVI5_PLAHL (Calcineurin subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AVI5_PLAHL)

HSP 1 Score: 151 bits (381), Expect = 2.170e-40
Identity = 75/104 (72.12%), Postives = 88/104 (84.62%), Query Frame = 1 
Query:    1 QVDPSPQCEGVFQLFDNDRSGQIDVREFMISLTNFAGTSKDDKLSFAFKVFDEDGNGVITKQEASLTRILKANHMAQTEAEVARKTETIMAQADKDGDGVVTFD 312
            QVDPSPQ + VFQLFDND+  +IDVREFMI+L+NF G  K+DKL FAF VFDEDGNGVIT+QE  L +ILKANHMA +E EVARK +TIM+Q DKDGDGV++FD
Sbjct:  669 QVDPSPQSQRVFQLFDNDKVSRIDVREFMIALSNFTGADKEDKLKFAFLVFDEDGNGVITRQE--LIKILKANHMASSEGEVARKADTIMSQGDKDGDGVISFD 770
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BLAST of mRNA_H-paniculata_contig15042.2997.1 vs. uniprot
Match: W4GRQ0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GRQ0_9STRA)

HSP 1 Score: 149 bits (376), Expect = 9.770e-40
Identity = 72/103 (69.90%), Postives = 87/103 (84.47%), Query Frame = 1 
Query:    4 VDPSPQCEGVFQLFDNDRSGQIDVREFMISLTNFAGTSKDDKLSFAFKVFDEDGNGVITKQEASLTRILKANHMAQTEAEVARKTETIMAQADKDGDGVVTFD 312
            VDPSPQCE +F LFDND+ G+IDVREF+I+L+NF G  KD+KL FAF VFD+DGNGV++K E  L +ILKANHMA  E+EVARK +TIM+Q DKDGDGV+TFD
Sbjct:  641 VDPSPQCEKLFGLFDNDKVGRIDVREFLIALSNFCGAEKDEKLKFAFMVFDDDGNGVLSKME--LMKILKANHMASNESEVARKADTIMSQGDKDGDGVITFD 741
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BLAST of mRNA_H-paniculata_contig15042.2997.1 vs. uniprot
Match: A0A7S3M8S8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8S8_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.030e-39
Identity = 71/104 (68.27%), Postives = 87/104 (83.65%), Query Frame = 1 
Query:    1 QVDPSPQCEGVFQLFDNDRSGQIDVREFMISLTNFAGTSKDDKLSFAFKVFDEDGNGVITKQEASLTRILKANHMAQTEAEVARKTETIMAQADKDGDGVVTFD 312
            QVDP+P CE VF+L+D D++GQID REF+I+++N+ G  K+DKL FAF  FDEDGNGVITK E  L +ILK+NHMA  +AEVARK +TIMAQADKDGDGV+TFD
Sbjct:  325 QVDPAPLCETVFRLYDYDKTGQIDAREFLIAVSNYTGAGKEDKLKFAFMSFDEDGNGVITKAE--LLKILKSNHMASHDAEVARKADTIMAQADKDGDGVITFD 426
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BLAST of mRNA_H-paniculata_contig15042.2997.1 vs. uniprot
Match: A0A6A5AFB9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AFB9_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.250e-39
Identity = 72/103 (69.90%), Postives = 87/103 (84.47%), Query Frame = 1 
Query:    4 VDPSPQCEGVFQLFDNDRSGQIDVREFMISLTNFAGTSKDDKLSFAFKVFDEDGNGVITKQEASLTRILKANHMAQTEAEVARKTETIMAQADKDGDGVVTFD 312
            VDPSPQCE +F LFDND+ G+IDVREF+I+L+NF G  KD+KL FAF VFD+DGNGV++K E  L +ILKANHMA  E+EVARK +TIM+Q DKDGDGV+TFD
Sbjct:  694 VDPSPQCEKLFGLFDNDKVGRIDVREFLIALSNFCGAEKDEKLKFAFMVFDDDGNGVLSKME--LMKILKANHMASNESEVARKADTIMSQGDKDGDGVITFD 794
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BLAST of mRNA_H-paniculata_contig15042.2997.1 vs. uniprot
Match: A0A485L5Z3_9STRA (Aste57867_16513 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L5Z3_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.510e-39
Identity = 71/103 (68.93%), Postives = 88/103 (85.44%), Query Frame = 1 
Query:    4 VDPSPQCEGVFQLFDNDRSGQIDVREFMISLTNFAGTSKDDKLSFAFKVFDEDGNGVITKQEASLTRILKANHMAQTEAEVARKTETIMAQADKDGDGVVTFD 312
            VDPSPQCE +F LFDND+ G+IDVREF+I+L+NF G  K++KL FAF VFD+DGNGV++KQE  L +ILKANHMA  E+EVARK +TIM+Q DKDGDGV++FD
Sbjct:  640 VDPSPQCEKLFGLFDNDKVGRIDVREFLIALSNFCGAEKEEKLKFAFMVFDDDGNGVLSKQE--LMKILKANHMASNESEVARKADTIMSQGDKDGDGVISFD 740
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15042.2997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JD51_9PHAE2.790e-5589.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FII4_ECTSI5.270e-5289.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6A3NZV5_9STRA8.590e-4374.04Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
A0A835ZJR9_9STRA2.270e-4275.68Putative calcineurin subunit B n=1 Tax=Tribonema m... [more]
A0A662YEB8_9STRA1.410e-4070.19Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A0P1AVI5_PLAHL2.170e-4072.12Calcineurin subunit n=1 Tax=Plasmopara halstedii T... [more]
W4GRQ0_9STRA9.770e-4069.90Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A7S3M8S8_9STRA1.030e-3968.27Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6A5AFB9_9STRA1.250e-3969.90Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A485L5Z3_9STRA2.510e-3968.93Aste57867_16513 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15042contigH-paniculata_contig15042:2663..3630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.5
Seed ortholog evalue2.5e-44
Seed eggNOG ortholog2880.D7FII4
KEGG rclassRC00004,RC00037
KEGG koko:K02183,ko:K06268,ko:K08193,ko:K13510
KEGG TC2.A.1.14
KEGG ReactionR01318,R03437,R03438,R09036
KEGG Pathwayko00564,ko00565,ko01100,ko04010,ko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04310,ko04360,ko04370,ko04371,ko04380,ko04626,ko04650,ko04658,ko04659,ko04660,ko04662,ko04713,ko04720,ko04722,ko04724,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05014,ko05031,ko05034,ko05133,ko05152,ko05166,ko05167,ko05200,ko05214,ko05418,map00564,map00565,map01100,map04010,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04310,map04360,map04370,map04371,map04380,map04626,map04650,map04658,map04659,map04660,map04662,map04713,map04720,map04722,map04724,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05014,map05031,map05034,map05133,map05152,map05166,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759,KOG0034@2759
EC2.3.1.23,2.3.1.67
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004,ko01009,ko02000,ko03036,ko04131,ko04147
Exons2
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929206.6239367-CDS-H-paniculata_contig15042:2662..27791622929206.6239367-CDS-H-paniculata_contig15042:2662..2779Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15042 2663..2779 -
1691480770.1399727-CDS-H-paniculata_contig15042:2662..27791691480770.1399727-CDS-H-paniculata_contig15042:2662..2779Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15042 2663..2779 -
1622929206.7129395-CDS-H-paniculata_contig15042:3435..36301622929206.7129395-CDS-H-paniculata_contig15042:3435..3630Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15042 3436..3630 -
1691480770.1505926-CDS-H-paniculata_contig15042:3435..36301691480770.1505926-CDS-H-paniculata_contig15042:3435..3630Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15042 3436..3630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15042.2997.1prot_H-paniculata_contig15042.2997.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15042 2663..3630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15042.2997.1

>prot_H-paniculata_contig15042.2997.1 ID=prot_H-paniculata_contig15042.2997.1|Name=mRNA_H-paniculata_contig15042.2997.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
QVDPSPQCEGVFQLFDNDRSGQIDVREFMISLTNFAGTSKDDKLSFAFKV
FDEDGNGVITKQEASLTRILKANHMAQTEAEVARKTETIMAQADKDGDGV
VTFD
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mRNA from alignment at H-paniculata_contig15042:2663..3630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15042.2997.1 ID=mRNA_H-paniculata_contig15042.2997.1|Name=mRNA_H-paniculata_contig15042.2997.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=968bp|location=Sequence derived from alignment at H-paniculata_contig15042:2663..3630- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGGATCCGTCACCACAGTGCGAGGGAGTGTTCCAGCTGTTCGACAA
CGATCGGTCGGGACAGATTGACGTGCGCGAGTTCATGATCTCGCTCACCA
ACTTCGCCGGAACCAGCAAGGACGACAAGCTCAGTTTCGCCTTCAAAGTT
TTCGACGAAGACGGAAACGGCGTCATCACCAAGCAGGAGGCAAGTGTAGC
GTCGAGCACTACATTGTCCTTGTTACCACGAGAGTATCAAATGCAAACAT
GAACTTCAATGGCAAGTCGCGACATAAATCCAATACTACTATCTATTCTG
TTCACCCTTCATTGCCATTCAAATGTTCATTGATTTGTATCTCTTCATTG
TAGCTAAAATCAAGCGGTCAGCTCTCACAGCTAGTTTCGACATAAAATTT
CTTCAACAATGAAGCCCTTGAATATAAAATACCAATACAGATATTGCCAT
CATTATCATTATCATTATCATTATCATTATCATTATTATTTATTTATTTT
TGGTTCCCGATAGACAGTACTTGAAGGTTAACTAGCAGTTCTAAGAATCT
TGTTTATCAGACAGACAATAACCGAATGGTGTTATTTTGATTTCTTCATA
GCTTCAGTATATTAATAAACGGTATTCACAAACAAACGCAAGAAGCGATC
GGACACCCTGTCCCCTGTTAGTCACATATCCATCCTACAATCTCGCCAAT
TCCTCATATTGCCGATTCACTATACCGCCGACCTCTTGACCACCGACCCG
TTATGCCACCGACTCCTTATACCGTCAACCCCCTATACTGCGGTCCCCTT
ATACCGCCGATCGCCTTGCTCTTGTACGCACAATCATGTCCATTTGCATA
GCTAACGCGCATCTTGAAGGCAAACCACATGGCTCAGACGGAGGCAGAGG
TGGCTCGGAAGACAGAGACCATCATGGCGCAGGCGGATAAGGACGGTGAC
GGAGTTGTTACTTTCGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig15042:2663..3630-

>mRNA_H-paniculata_contig15042.2997.1 ID=mRNA_H-paniculata_contig15042.2997.1|Name=mRNA_H-paniculata_contig15042.2997.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig15042:2663..3630- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGGATCCGTCACCACAGTGCGAGGGAGTGTTCCAGCTGTTCGACAA
CGATCGGTCGGGACAGATTGACGTGCGCGAGTTCATGATCTCGCTCACCA
ACTTCGCCGGAACCAGCAAGGACGACAAGCTCAGTTTCGCCTTCAAAGTT
TTCGACGAAGACGGAAACGGCGTCATCACCAAGCAGGAGGCAAGTCAGGT
GGATCCGTCACCACAGTGCGAGGGAGTGTTCCAGCTGTTCGACAACGATC
GGTCGGGACAGATTGACGTGCGCGAGTTCATGATCTCGCTCACCAACTTC
GCCGGAACCAGCAAGGACGACAAGCTCAGTTTCGCCTTCAAAGTTTTCGA
CGAAGACGGAAACGGCGTCATCACCAAGCAGGAGGCAAGTCTAACGCGCA
TCTTGAAGGCAAACCACATGGCTCAGACGGAGGCAGAGGTGGCTCGGAAG
ACAGAGACCATCATGGCGCAGGCGGATAAGGACGGTGACGGAGTTGTTAC
TTTCGACCTAACGCGCATCTTGAAGGCAAACCACATGGCTCAGACGGAGG
CAGAGGTGGCTCGGAAGACAGAGACCATCATGGCGCAGGCGGATAAGGAC
GGTGACGGAGTTGTTACTTTCGAC
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