mRNA_H-paniculata_contig14977.2955.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14977.2955.1
Unique NamemRNA_H-paniculata_contig14977.2955.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14977.2955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14977contigH-paniculata_contig14977:4035..4875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size293
Cds size234
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14977.2955.1prot_H-paniculata_contig14977.2955.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14977 4035..4817 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929197.202994-CDS-H-paniculata_contig14977:4034..42411622929197.202994-CDS-H-paniculata_contig14977:4034..4241Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14977 4035..4241 -
1691480766.53783-CDS-H-paniculata_contig14977:4034..42411691480766.53783-CDS-H-paniculata_contig14977:4034..4241Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14977 4035..4241 -
1622929197.2162192-CDS-H-paniculata_contig14977:4790..48171622929197.2162192-CDS-H-paniculata_contig14977:4790..4817Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14977 4791..4817 -
1691480766.5525265-CDS-H-paniculata_contig14977:4790..48171691480766.5525265-CDS-H-paniculata_contig14977:4790..4817Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14977 4791..4817 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929197.2274265-UTR-H-paniculata_contig14977:4817..48751622929197.2274265-UTR-H-paniculata_contig14977:4817..4875Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14977 4818..4875 -
1691480766.5654788-UTR-H-paniculata_contig14977:4817..48751691480766.5654788-UTR-H-paniculata_contig14977:4817..4875Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14977 4818..4875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14977.2955.1

>prot_H-paniculata_contig14977.2955.1 ID=prot_H-paniculata_contig14977.2955.1|Name=mRNA_H-paniculata_contig14977.2955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
MPSWSGSNQCFLLISEEKSTVTEDRGRDVEDNPMGQNYDGEVVPAFLVDA
ASEEVAEAVGGVIYVFDQEERAEKLRAV
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mRNA from alignment at H-paniculata_contig14977:4035..4875-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14977.2955.1 ID=mRNA_H-paniculata_contig14977.2955.1|Name=mRNA_H-paniculata_contig14977.2955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=841bp|location=Sequence derived from alignment at H-paniculata_contig14977:4035..4875- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGAGTGTCGCAACGGCGGTGATGGCGTGTCAAGTGATCTCCGATGGTGA
AGAGATAGATGCCGTCATGGTCCGGGTCCAATCAGGCAAGTCGTTTTTTG
ATTTCGAGTTTTTGCGTGATGAGCTTGGTGGGCTGGTGGGGGACGAGCTA
TGGGTTAGTGACAGTGCTACATCTAAACATATGCCACCGTCTGCTAGTCA
CATGCTGAACTACCAACAATGCAGTAACCTTTTCGTAAGGACTGCATGTG
GTCGTAAGCATCCGGTCGTTGGCCATGGGGATCTAGACATGGTCTTCCGA
TCTGGCGCAGGTGTGGTGAACGTTATGCTGCAACATGTAAATCGCGTGCC
AGACCTAAACAACCATCTGTTTTCTCTGAGTGTTATGGTAGACTTGGGTC
ATGAATACCGAGGCAACGAAGAAGGTGTTTCTATTCTCATGGATTCTGGT
CTCGAGCTGTTGTTGCCTTCCTTCCAAGGACAATCTAAACTATGTCTTCG
GTTGCAGGAAACATGACTCGAGAGAAAATGCAAAAGCCACTAACACTGTC
ATTGCTCCAGGCAGTCTGCCTATTAATTCCGCTGACTCGCCTGACGAAAA
CGACGACCGTCCCCTCTGTACTTCCTCCTCCCAGTGTTTCTTGTTAATAA
GTGAGGAGAAATCTACGGTAACCGAAGATCGCGGACGAGACGTTGAAGAT
AACCCGATGGGACAGAATTATGATGGAGAGGTGGTTCCAGCATTTTTGGT
TGACGCTGCTTCGGAAGAGGTAGCTGAAGCAGTTGGAGGCGTGATCTACG
TCTTCGATCAGGAAGAGCGTGCGGAGAAGCTCAGAGCTGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig14977:4035..4875-

>mRNA_H-paniculata_contig14977.2955.1 ID=mRNA_H-paniculata_contig14977.2955.1|Name=mRNA_H-paniculata_contig14977.2955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig14977:4035..4875- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGTCATGGTCCGGGTCCAATCAGATGCCGTCATGGTCCGGGTCCAA
TCAGTGTTTCTTGTTAATAAGTGAGGAGAAATCTACGGTAACCGAAGATC
GCGGACGAGACGTTGAAGATAACCCGATGGGACAGAATTATGATGGAGAG
GTGGTTCCAGCATTTTTGGTTGACGCTGCTTCGGAAGAGGTAGCTGAAGC
AGTTGGAGGCGTGATCTACGTCTTCGATCAGGAAGAGCGTGCGGAGAAGC
TCAGAGCTGTCTGTTTCTTGTTAATAAGTGAGGAGAAATCTACGGTAACC
GAAGATCGCGGACGAGACGTTGAAGATAACCCGATGGGACAGAATTATGA
TGGAGAGGTGGTTCCAGCATTTTTGGTTGACGCTGCTTCGGAAGAGGTAG
CTGAAGCAGTTGGAGGCGTGATCTACGTCTTCGATCAGGAAGAGCGTGCG
GAGAAGCTCAGAGCTGTC
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