mRNA_H-paniculata_contig14913.2928.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14913.2928.1
Unique NamemRNA_H-paniculata_contig14913.2928.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14913.2928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14913contigH-paniculata_contig14913:15..713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size701
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929194.0240676-CDS-H-paniculata_contig14913:14..4371622929194.0240676-CDS-H-paniculata_contig14913:14..437Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14913 15..437 +
1691480765.1879432-CDS-H-paniculata_contig14913:14..4371691480765.1879432-CDS-H-paniculata_contig14913:14..437Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14913 15..437 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929194.0409312-UTR-H-paniculata_contig14913:437..7131622929194.0409312-UTR-H-paniculata_contig14913:437..713Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14913 438..713 +
1691480765.198097-UTR-H-paniculata_contig14913:437..7131691480765.198097-UTR-H-paniculata_contig14913:437..713Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14913 438..713 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14913.2928.1prot_H-paniculata_contig14913.2928.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14913 15..437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14913.2928.1

>prot_H-paniculata_contig14913.2928.1 ID=prot_H-paniculata_contig14913.2928.1|Name=mRNA_H-paniculata_contig14913.2928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
GGGGGGGGGGEGGGGGEYGVIYTRKSTERPSRSPYFPKYRPTQQWDYTKS
SSYPQVHGFQDDLSDIRVQKQSGKIVIGRVWVCYAAKKEKYTLPEYPLQH
SAWGYAIHNPKPTQSLLRYVVVPLLRPQISSLFQNPTHPT*
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mRNA from alignment at H-paniculata_contig14913:15..713+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14913.2928.1 ID=mRNA_H-paniculata_contig14913.2928.1|Name=mRNA_H-paniculata_contig14913.2928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=699bp|location=Sequence derived from alignment at H-paniculata_contig14913:15..713+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGA
ATACGGGGTGATATATACGCGAAAGAGCACGGAGCGGCCCAGTAGATCTC
CCTATTTCCCCAAGTACCGACCTACACAGCAGTGGGACTACACAAAGTCA
TCCAGTTACCCCCAGGTGCATGGTTTTCAAGATGATCTAAGTGACATTCG
CGTACAGAAGCAATCTGGGAAAATCGTAATTGGAAGGGTTTGGGTCTGCT
ATGCTGCAAAGAAAGAAAAATACACTCTACCCGAATATCCTCTTCAGCAT
TCAGCTTGGGGGTACGCCATACATAACCCCAAACCTACCCAATCTCTCTT
GCGATATGTAGTAGTACCCCTCTTGCGCCCCCAAATCTCGTCCCTATTCC
AGAATCCCACCCACCCCACCTAATACGACACTTCCGATCTCTCAAGCAAA
GGCAATATACCACGCCCCAACACATCATGTGTCTCCAAGACCTAAAAACC
ACATGCACAACAGCAAACACACACAACACGACATGCACACTACACCATAC
TGCGCAGGATCAGGACGCCCGCCCGACCCCCTGGTCGCACACGTACATAG
AGGCGACGGTGCAGGCCAATAATCGGGGAGAGCGGGTCAACTACGTACCT
ACCGCCTAGCCGTCTTCAACGGTCCGCCCCAATGTCGCCTCTGGTAAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig14913:15..713+

>mRNA_H-paniculata_contig14913.2928.1 ID=mRNA_H-paniculata_contig14913.2928.1|Name=mRNA_H-paniculata_contig14913.2928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig14913:15..713+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGA
ATACGGGGTGATATATACGCGAAAGAGCACGGAGCGGCCCAGTAGATCTC
CCTATTTCCCCAAGTACCGACCTACACAGCAGTGGGACTACACAAAGTCA
TCCAGTTACCCCCAGGTGCATGGTTTTCAAGATGATCTAAGTGACATTCG
CGTACAGAAGCAATCTGGGAAAATCGTAATTGGAAGGGTTTGGGTCTGCT
ATGCTGCAAAGAAAGAAAAATACACTCTACCCGAATATCCTCTTCAGCAT
TCAGCTTGGGGGTACGCCATACATAACCCCAAACCTACCCAATCTCTCTT
GCGATATGTAGTAGTACCCCTCTTGCGCCCCCAAATCTCGTCCCTATTCC
AGAATCCCACCCACCCCACCTAAGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGAGGGGGGGGGGGGGGGGGAATACGGGGTGATATATACGCGAAAGAG
CACGGAGCGGCCCAGTAGATCTCCCTATTTCCCCAAGTACCGACCTACAC
AGCAGTGGGACTACACAAAGTCATCCAGTTACCCCCAGGTGCATGGTTTT
CAAGATGATCTAAGTGACATTCGCGTACAGAAGCAATCTGGGAAAATCGT
AATTGGAAGGGTTTGGGTCTGCTATGCTGCAAAGAAAGAAAAATACACTC
TACCCGAATATCCTCTTCAGCATTCAGCTTGGGGGTACGCCATACATAAC
CCCAAACCTACCCAATCTCTCTTGCGATATGTAGTAGTACCCCTCTTGCG
CCCCCAAATCTCGTCCCTATTCCAGAATCCCACCCACCCCACCTAA
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