mRNA_H-paniculata_contig14909.2924.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14909.2924.1
Unique NamemRNA_H-paniculata_contig14909.2924.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14909.2924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14909contigH-paniculata_contig14909:4728..5318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size218
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929193.289412-CDS-H-paniculata_contig14909:4729..47541622929193.289412-CDS-H-paniculata_contig14909:4729..4754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14909 4730..4754 -
1691480764.892641-CDS-H-paniculata_contig14909:4729..47541691480764.892641-CDS-H-paniculata_contig14909:4729..4754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14909 4730..4754 -
1622929193.3194015-CDS-H-paniculata_contig14909:5127..53181622929193.3194015-CDS-H-paniculata_contig14909:5127..5318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14909 5128..5318 -
1691480764.9024146-CDS-H-paniculata_contig14909:5127..53181691480764.9024146-CDS-H-paniculata_contig14909:5127..5318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14909 5128..5318 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14909.2924.1prot_H-paniculata_contig14909.2924.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14909 4730..5318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14909.2924.1

>prot_H-paniculata_contig14909.2924.1 ID=prot_H-paniculata_contig14909.2924.1|Name=mRNA_H-paniculata_contig14909.2924.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
NAQCPAYATNYRESHGMTCDHHKSAASTIPRPRTSSSCWTRGLHCLYHHV
PKAERVNRQTVQTRQVDVAASS
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mRNA from alignment at H-paniculata_contig14909:4728..5318-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14909.2924.1 ID=mRNA_H-paniculata_contig14909.2924.1|Name=mRNA_H-paniculata_contig14909.2924.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=591bp|location=Sequence derived from alignment at H-paniculata_contig14909:4728..5318- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGCACAGTGCCCAGCGTACGCCACCAACTACCGCGAGAGCCATGGCAT
GACTTGCGATCATCACAAAAGTGCTGCATCAACAATCCCGAGGCCCAGAA
CATCGTCGTCGTGTTGGACGCGTGGTTTGCACTGCCTTTATCATCATGTT
CCCAAAGCGGAACGGGTCAATCGTCAAACGGTACAGACGAGGTACAGACA
GTGCAAAGCATGCGCCCAGCACGATGACAATGATTCTGAGCCTCGGGATT
GTTGTTGAAGCACTCCTATTATGACCACAACGCACACCATGACCCTCGCA
GTGGTTGGTGGTGTGCGCTGGGCTGGGCACTTTGCGTTTGATATCGATGT
CCTCCCTCGTGTGATTTGATATTTTTCCGCCTTTCAACGAATGTCGGTAT
GACGTCGGCGTAAATTGCAAACCTGGCAAAAACGTTCTTCCAGTATTCGG
ATCATTTCATTTTTCTCCGTTTTTCGGCTAAAAATACGCCCGCTAGGAAT
GACCCTAAAGGTCGGTGTGAAACGAAAATAATCTTCATGGTTGTTGGTTC
ATTCCGTTTTCAAGACAGGTGGATGTTGCTGCATCATCAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig14909:4728..5318-

>mRNA_H-paniculata_contig14909.2924.1 ID=mRNA_H-paniculata_contig14909.2924.1|Name=mRNA_H-paniculata_contig14909.2924.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig14909:4728..5318- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGCACAGTGCCCAGCGTACGCCACCAACTACCGCGAGAGCCATGGCAT
GACTTGCGATCATCACAAAAGTGCTGCATCAACAATCCCGAGGCCCAGAA
CATCGTCGTCGTGTTGGACGCGTGGTTTGCACTGCCTTTATCATCATGTT
CCCAAAGCGGAACGGGTCAATCGTCAAACGGTACAGACGAGAATGCACAG
TGCCCAGCGTACGCCACCAACTACCGCGAGAGCCATGGCATGACTTGCGA
TCATCACAAAAGTGCTGCATCAACAATCCCGAGGCCCAGAACATCGTCGT
CGTGTTGGACGCGTGGTTTGCACTGCCTTTATCATCATGTTCCCAAAGCG
GAACGGGTCAATCGTCAAACGGTACAGACGAGACAGGTGGATGTTGCTGC
ATCATCAACAGGTGGATGTTGCTGCATCATCA
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