mRNA_H-paniculata_contig1488.2908.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1488.2908.1
Unique NamemRNA_H-paniculata_contig1488.2908.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1488.2908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1488contigH-paniculata_contig1488:22112..22991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size774
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1488.2908.1prot_H-paniculata_contig1488.2908.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1488 22413..22974 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929190.915643-UTR-H-paniculata_contig1488:22111..224121622929190.915643-UTR-H-paniculata_contig1488:22111..22412Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1488 22112..22412 -
1691480763.9924638-UTR-H-paniculata_contig1488:22111..224121691480763.9924638-UTR-H-paniculata_contig1488:22111..22412Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1488 22112..22412 -
1622929190.981135-UTR-H-paniculata_contig1488:22974..229911622929190.981135-UTR-H-paniculata_contig1488:22974..22991Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1488 22975..22991 -
1691480764.018148-UTR-H-paniculata_contig1488:22974..229911691480764.018148-UTR-H-paniculata_contig1488:22974..22991Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1488 22975..22991 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929190.9296942-CDS-H-paniculata_contig1488:22412..224641622929190.9296942-CDS-H-paniculata_contig1488:22412..22464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1488 22413..22464 -
1691480764.0017817-CDS-H-paniculata_contig1488:22412..224641691480764.0017817-CDS-H-paniculata_contig1488:22412..22464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1488 22413..22464 -
1622929190.946035-CDS-H-paniculata_contig1488:22570..229741622929190.946035-CDS-H-paniculata_contig1488:22570..22974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1488 22571..22974 -
1691480764.0096717-CDS-H-paniculata_contig1488:22570..229741691480764.0096717-CDS-H-paniculata_contig1488:22570..22974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1488 22571..22974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1488.2908.1

>prot_H-paniculata_contig1488.2908.1 ID=prot_H-paniculata_contig1488.2908.1|Name=mRNA_H-paniculata_contig1488.2908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
MVPIGGLLILAEQDKSAALRAACPQSLRPRSSSARTDAASVRRDEKQPER
QSSVDVSIPSDLLPRRSRTTPEDKAQKSTTALEHREKEIRKSYGEHIRKL
KRELEDAKAKRAMAISREVNTHISARNLSVEVERQGCGRPRKVNRRHVLL
F*
back to top

mRNA from alignment at H-paniculata_contig1488:22112..22991-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1488.2908.1 ID=mRNA_H-paniculata_contig1488.2908.1|Name=mRNA_H-paniculata_contig1488.2908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=880bp|location=Sequence derived from alignment at H-paniculata_contig1488:22112..22991- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTTATTCGCCGGCCTAATGGTCCCCATCGGCGGCCTGCTAATCCTGGCG
GAGCAAGACAAGTCAGCCGCGCTCCGCGCAGCCTGTCCACAATCTTTACG
CCCGCGTTCGTCGTCAGCTCGCACCGATGCCGCTTCAGTTAGGCGAGATG
AAAAACAACCGGAGCGGCAGTCAAGTGTTGACGTCAGCATTCCCTCCGAC
CTTCTCCCGCGCAGGAGCCGCACAACGCCCGAAGACAAAGCGCAGAAGTC
CACCACCGCCCTCGAGCATCGCGAGAAGGAAATTCGCAAATCTTACGGAG
AGCACATACGCAAGCTTAAACGAGAGCTGGAGGACGCCAAAGCCAAGCGC
GCGATGGCTATATCCCGCGAGGTAAATACGCATATTTCGGCGAGAAACCT
CAGTGTGGAGGTGGAGCGCCAGCATAGGGATCAGGTGCAAGAATTGAAGG
AAACGGCCTCGGCTGCCGAGGCAGCGTCCGCGGAAGCGGACGCCGCGGCC
AAGGGTCTACTGGCGGCGGCGGTGAAGAGGATGCGGGCGGCCGAGGAAAG
TGAACAGGCGGCACGTGCTGCTATTTTAGAGGCAAAGCGCATCTCGGGAA
GTGTGAAGCCCGACGCGGCCCCCGAGTTGAGAAAGTTCGAGCCGGCGTCT
TCGAGCGAGGTGAAATCCGCAATGAAGTCGGTGGCACCGTCCACGGGTGC
TATGTCCGAGTATGTTTCCCAACTGAACGACGTGAGGAACGTCCCTGCAA
GCGGTCCAAACGCCTCGGCAGCGATGGCGGCAAGCGCGGCCCGATGCGAC
GCAACGCACACGGCCGTAGGTAGTGGTGGTGGCGGCGTTGTCGGACACCG
GAATATGGGTAATGGTGACGTAGTGATAGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1488:22112..22991-

>mRNA_H-paniculata_contig1488.2908.1 ID=mRNA_H-paniculata_contig1488.2908.1|Name=mRNA_H-paniculata_contig1488.2908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig1488:22112..22991- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCCCCATCGGCGGCCTGCTAATCCTGGCGGAGCAAGACAAGTCAGC
CGCGCTCCGCGCAGCCTGTCCACAATCTTTACGCCCGCGTTCGTCGTCAG
CTCGCACCGATGCCGCTTCAGTTAGGCGAGATGAAAAACAACCGGAGCGG
CAGTCAAGTGTTGACGTCAGCATTCCCTCCGACCTTCTCCCGCGCAGGAG
CCGCACAACGCCCGAAGACAAAGCGCAGAAGTCCACCACCGCCCTCGAGC
ATCGCGAGAAGGAAATTCGCAAATCTTACGGAGAGCACATACGCAAGCTT
AAACGAGAGCTGGAGGACGCCAAAGCCAAGCGCGCGATGGCTATATCCCG
CGAGGTAAATACGCATATTTCGGCGAGAAACCTCAGTGTGGAGGTGGAGC
GCCAATGGTCCCCATCGGCGGCCTGCTAATCCTGGCGGAGCAAGACAAGT
CAGCCGCGCTCCGCGCAGCCTGTCCACAATCTTTACGCCCGCGTTCGTCG
TCAGCTCGCACCGATGCCGCTTCAGTTAGGCGAGATGAAAAACAACCGGA
GCGGCAGTCAAGTGTTGACGTCAGCATTCCCTCCGACCTTCTCCCGCGCA
GGAGCCGCACAACGCCCGAAGACAAAGCGCAGAAGTCCACCACCGCCCTC
GAGCATCGCGAGAAGGAAATTCGCAAATCTTACGGAGAGCACATACGCAA
GCTTAAACGAGAGCTGGAGGACGCCAAAGCCAAGCGCGCGATGGCTATAT
CCCGCGAGGTAAATACGCATATTTCGGCGAGAAACCTCAGTGTGGAGGTG
GAGCGCCAAGGATGCGGGCGGCCGAGGAAAGTGAACAGGCGGCACGTGCT
GCTATTTTAGAGGATGCGGGCGGCCGAGGAAAGTGAACAGGCGGCACGTG
CTGCTATTTTAG
back to top