mRNA_H-paniculata_contig14865.2900.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14865.2900.1
Unique NamemRNA_H-paniculata_contig14865.2900.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14865.2900.1 vs. uniprot
Match: A0A6H5L197_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L197_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.050e-10
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 3 
Query:  945 DINVFHCSFGHANELLILETAKQRGVVLTGELRGCSGGAMAKGLRKSISTGPAPRAVKILGLTNVDTCGPKGVLGVGGVRFMLI 1196
            DIN FH S  HA E L+ ETAKQRG+VLTG+L  C+    A+G R+S+  GP  RA K LG  ++D CGP  V  +GG  ++ +
Sbjct:   80 DINRFHRSLAHACEPLLRETAKQRGIVLTGKLEPCTDCMKAQGRRRSVPRGPGARASKPLGRVHLDLCGPL-VPSLGGNLYLFV 162
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BLAST of mRNA_H-paniculata_contig14865.2900.1 vs. uniprot
Match: A0A6H5LE52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE52_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.170e-9
Identity = 40/84 (47.62%), Postives = 50/84 (59.52%), Query Frame = 3 
Query:  945 DINVFHCSFGHANELLILETAKQRGVVLTGELRGCSGGAMAKGLRKSISTGPAPRAVKILGLTNVDTCGPKGVLGVGGVRFMLI 1196
            DIN FH S  HA E L+ ETA+QRG+ LTG L  CS    AKG R S+  GP  RA K LG  ++D CGP     +GG  ++ +
Sbjct:  515 DINRFHRSLAHACEPLLRETARQRGITLTGTLEPCSDCMKAKGKRASVPKGPGARASKPLGRVHLDLCGPLAP-SLGGNLYLFV 597
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BLAST of mRNA_H-paniculata_contig14865.2900.1 vs. uniprot
Match: A0A6H5KHU9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHU9_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.760e-8
Identity = 38/70 (54.29%), Postives = 42/70 (60.00%), Query Frame = 3 
Query:  945 DINVFHCSFGHANELLILETAKQRGVVLTGELRGCSGGAMAKGLRKSISTGPAPRAVKILGLTNVDTCGP 1154
            DIN FH S  HA E L  ETA+QRG+ LTG L  CS    AKG R S   GP  RA K LG  ++D CGP
Sbjct:   76 DINRFHRSLAHACEPLSRETARQRGITLTGTLEPCSDCMKAKGKRSSAPKGPGARASKPLGRVHLDVCGP 145
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14865.2900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L197_9PHAE2.050e-1048.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LE52_9PHAE2.170e-947.62Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHU9_9PHAE1.760e-854.29Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14865contigH-paniculata_contig14865:4714..6516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1329
Cds size852
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14865.2900.1prot_H-paniculata_contig14865.2900.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14865 4855..6180 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929189.4054747-UTR-H-paniculata_contig14865:4713..48541622929189.4054747-UTR-H-paniculata_contig14865:4713..4854Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14865 4714..4854 +
1691480763.6021116-UTR-H-paniculata_contig14865:4713..48541691480763.6021116-UTR-H-paniculata_contig14865:4713..4854Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14865 4714..4854 +
1622929190.01233-UTR-H-paniculata_contig14865:6180..65161622929190.01233-UTR-H-paniculata_contig14865:6180..6516Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14865 6181..6516 +
1691480763.62818-UTR-H-paniculata_contig14865:6180..65161691480763.62818-UTR-H-paniculata_contig14865:6180..6516Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14865 6181..6516 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929189.980555-CDS-H-paniculata_contig14865:4854..56561622929189.980555-CDS-H-paniculata_contig14865:4854..5656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14865 4855..5656 +
1691480763.6113966-CDS-H-paniculata_contig14865:4854..56561691480763.6113966-CDS-H-paniculata_contig14865:4854..5656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14865 4855..5656 +
1622929189.9960139-CDS-H-paniculata_contig14865:6130..61801622929189.9960139-CDS-H-paniculata_contig14865:6130..6180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14865 6131..6180 +
1691480763.6198354-CDS-H-paniculata_contig14865:6130..61801691480763.6198354-CDS-H-paniculata_contig14865:6130..6180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14865 6131..6180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14865.2900.1

>prot_H-paniculata_contig14865.2900.1 ID=prot_H-paniculata_contig14865.2900.1|Name=mRNA_H-paniculata_contig14865.2900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=284bp
MDASLWPEYYDRQANDPPISVSNCSVAGVVYPFWVHDAGCKGSFTCRTYG
TKCQSPRGPDALSFSASLEEARRLRGVGLPTDDKLVCEIFFVNLTREYKV
LKERLLADKSLLDNDEFVQLLRAHYELFVKHQPKGRDAENALVVTGAGTV
GGRGTIGGKFSKSAASKSAATDCSSNSAKGGRPAGTKSKQPKCFICRSKD
HLQRDCPNVYCRRCGKRGHDLNACPQLADEDASLAEAETEIEVEEVLKVD
LGQDEFIAACIASTSTTGISMCFTAPLVMRTSC*
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mRNA from alignment at H-paniculata_contig14865:4714..6516+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14865.2900.1 ID=mRNA_H-paniculata_contig14865.2900.1|Name=mRNA_H-paniculata_contig14865.2900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1803bp|location=Sequence derived from alignment at H-paniculata_contig14865:4714..6516+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGACTCGCAAGGACTCCACCGCCGCCGCCGGTTCCTCCGCTAGCGCACG
ACGAAACGCGTCCACGCACCATCCTAGCACTAGCTTTCTCAGCAGCTCGA
CGTGTTCAGGGGTCAGGCCGGCCTCACCTGCCGCCCGCGTGATGGATGCT
TCTCTGTGGCCTGAGTACTACGACCGACAAGCAAATGATCCGCCAATTTC
GGTCTCCAACTGCAGCGTGGCGGGCGTTGTCTACCCATTTTGGGTCCACG
ACGCGGGCTGCAAGGGTTCATTTACTTGTAGAACTTATGGAACAAAATGT
CAAAGTCCGAGAGGACCCGACGCTCTCTCTTTTAGTGCGTCACTGGAAGA
AGCGAGGCGTTTGCGTGGGGTCGGGCTGCCTACTGATGATAAGTTAGTAT
GCGAGATCTTCTTTGTCAATTTGACCAGAGAATACAAGGTGTTGAAGGAG
CGTCTCCTCGCTGATAAATCTCTGTTAGATAACGATGAGTTTGTCCAACT
GCTTCGCGCGCACTACGAGCTGTTTGTAAAGCACCAGCCAAAGGGACGTG
ATGCCGAGAATGCCCTGGTCGTTACGGGGGCAGGTACAGTCGGGGGACGG
GGTACTATCGGCGGTAAATTTAGTAAATCCGCTGCTTCAAAATCCGCCGC
CACCGATTGTTCTAGCAACAGCGCCAAGGGTGGCCGGCCCGCTGGCACCA
AGAGCAAGCAGCCAAAGTGCTTTATCTGCCGCTCTAAGGACCACCTTCAA
CGGGACTGCCCCAACGTGTACTGTCGGCGATGTGGTAAGCGTGGTCACGA
CTTGAACGCGTGCCCCCAGCTCGCCGATGAAGATGCTTCTTTGGCTGAAG
CTGAAACTGAGATTGAAGTTGAAGAGGTGCTCAAGGTTGATCTGGGCCAA
GACGAGTTCATCGCGGCATGCATCGCGTCGACTTCCACCACAGGCAAGGA
AGAGGTTTTGTGACTCTGAGGGGTTAGAATATCGTGAGGTGGGGGGTATG
GAGATCTGGATATGTGATAATGGTGCAACGAAACACATGACCCATGATTT
AGATTTTCGTTGTGATTTCCAGCAATGTAATGGGCATGTACGCCTTGCAG
ATGGTAACCGTCTCCCGATCGAAGGAGTTGGCATGCTTTCGATTTGAGTC
CGAGGTTGTTTTGATGAAGTTAACTCAGGTTACATTCGTACCACTCCTCA
GTCATCACGTCCTATCTCTCGGGAAATTCGCGGACTCTGGTCATGAATAT
AGGTGTTCCCGCGAAGGGCTCAGACTTCACCTTAAAACGGGGAGAGTTCT
GAGTGCTGAGCGATTTGGTAGCCTTGACGTGATGCGAGGGTCGCGAGTTT
GTCCCGAAGAGAGTTCGCTTGCAACGATAGCCCCGTCCCGCCTGCCGATA
CATTCCGCTACCCACAGGGATATCAATGTGTTTCACTGCTCCTTTGGTCA
TGCGAACGAGTTGTTGATTCTGGAGACGGCGAAGCAGCGTGGCGTGGTGT
TGACTGGAGAGCTGCGGGGGTGCAGCGGGGGTGCGATGGCGAAGGGCCTG
CGAAAGTCGATCAGCACGGGGCCTGCTCCCAGAGCAGTTAAGATACTAGG
CCTCACTAATGTCGATACGTGTGGTCCGAAGGGAGTTTTAGGAGTCGGGG
GAGTGCGTTTTATGTTGATTTTAGGGACAGTTTCTCATGTAAGTCAACCG
TTTACTTCATGCGATCTAAAAGTGAGGTAGATGGGTACCTCAAACAAGAC
TTAGCAGATACTAGGTCAGACTGCATTCCATCGTCAGCTGAAGTTATTCG
AAC
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Coding sequence (CDS) from alignment at H-paniculata_contig14865:4714..6516+

>mRNA_H-paniculata_contig14865.2900.1 ID=mRNA_H-paniculata_contig14865.2900.1|Name=mRNA_H-paniculata_contig14865.2900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1704bp|location=Sequence derived from alignment at H-paniculata_contig14865:4714..6516+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGCTTCTCTGTGGCCTGAGTACTACGACCGACAAGCAAATGATCC
GCCAATTTCGGTCTCCAACTGCAGCGTGGCGGGCGTTGTCTACCCATTTT
GGGTCCACGACGCGGGCTGCAAGGGTTCATTTACTTGTAGAACTTATGGA
ACAAAATGTCAAAGTCCGAGAGGACCCGACGCTCTCTCTTTTAGTGCGTC
ACTGGAAGAAGCGAGGCGTTTGCGTGGGGTCGGGCTGCCTACTGATGATA
AGTTAGTATGCGAGATCTTCTTTGTCAATTTGACCAGAGAATACAAGGTG
TTGAAGGAGCGTCTCCTCGCTGATAAATCTCTGTTAGATAACGATGAGTT
TGTCCAACTGCTTCGCGCGCACTACGAGCTGTTTGTAAAGCACCAGCCAA
AGGGACGTGATGCCGAGAATGCCCTGGTCGTTACGGGGGCAGGTACAGTC
GGGGGACGGGGTACTATCGGCGGTAAATTTAGTAAATCCGCTGCTTCAAA
ATCCGCCGCCACCGATTGTTCTAGCAACAGCGCCAAGGGTGGCCGGCCCG
CTGGCACCAAGAGCAAGCAGCCAAAGTGCTTTATCTGCCGCTCTAAGGAC
CACCTTCAACGGGACTGCCCCAACGTGTACTGTCGGCGATGTGGTAAGCG
TGGTCACGACTTGAACGCGTGCCCCCAGCTCGCCGATGAAGATGCTTCTT
TGGCTGAAGCTGAAACTGAGATTGAAGTTGAAGAGGTGCTCAAGGTTGAT
CTGGGCCAAGACGAGTTCATCGCGGCATGCATCGCGTCGACTTCCACCAC
AGATGGATGCTTCTCTGTGGCCTGAGTACTACGACCGACAAGCAAATGAT
CCGCCAATTTCGGTCTCCAACTGCAGCGTGGCGGGCGTTGTCTACCCATT
TTGGGTCCACGACGCGGGCTGCAAGGGTTCATTTACTTGTAGAACTTATG
GAACAAAATGTCAAAGTCCGAGAGGACCCGACGCTCTCTCTTTTAGTGCG
TCACTGGAAGAAGCGAGGCGTTTGCGTGGGGTCGGGCTGCCTACTGATGA
TAAGTTAGTATGCGAGATCTTCTTTGTCAATTTGACCAGAGAATACAAGG
TGTTGAAGGAGCGTCTCCTCGCTGATAAATCTCTGTTAGATAACGATGAG
TTTGTCCAACTGCTTCGCGCGCACTACGAGCTGTTTGTAAAGCACCAGCC
AAAGGGACGTGATGCCGAGAATGCCCTGGTCGTTACGGGGGCAGGTACAG
TCGGGGGACGGGGTACTATCGGCGGTAAATTTAGTAAATCCGCTGCTTCA
AAATCCGCCGCCACCGATTGTTCTAGCAACAGCGCCAAGGGTGGCCGGCC
CGCTGGCACCAAGAGCAAGCAGCCAAAGTGCTTTATCTGCCGCTCTAAGG
ACCACCTTCAACGGGACTGCCCCAACGTGTACTGTCGGCGATGTGGTAAG
CGTGGTCACGACTTGAACGCGTGCCCCCAGCTCGCCGATGAAGATGCTTC
TTTGGCTGAAGCTGAAACTGAGATTGAAGTTGAAGAGGTGCTCAAGGTTG
ATCTGGGCCAAGACGAGTTCATCGCGGCATGCATCGCGTCGACTTCCACC
ACAGGGATATCAATGTGTTTCACTGCTCCTTTGGTCATGCGAACGAGTTG
TTGAGGATATCAATGTGTTTCACTGCTCCTTTGGTCATGCGAACGAGTTG
TTGA
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