mRNA_H-paniculata_contig14860.2897.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14860.2897.1
Unique NamemRNA_H-paniculata_contig14860.2897.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14860.2897.1 vs. uniprot
Match: D7FTS5_ECTSI (Glycos_transf_1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTS5_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 4.690e-34
Identity = 93/180 (51.67%), Postives = 112/180 (62.22%), Query Frame = 1 
Query:    4 GSRSETNVSTLIMSFVALGMTDQELVRRSKTRPTNVRTTLDAESDSMAVLVLSLATSRRVWFGGIVDGMFRYLFVLATGARELPLSPIGSTGRLFAKVAALASVAALALT---GTGRSGGIGAGVGSVLAEVEVARQGLFSALLCSPSPFLCMAGVAVLRASYSVDFCQIGVVLPPEKAA 534
            G  S  +V+   + FV L + D  L RRSK+ PT V   LD ESDS+AVL LSLA S++ W GG + G+ RYLFVLAT ARELP SPIG  GR  AK+AALASVAALA +   G  R+GG G    + + E    R           SP LC  GVAVL AS+S+DF QI V+LP E+AA
Sbjct:  589 GQVSMADVTVFGVLFVLLDVADGILARRSKSGPTRVGAALDVESDSIAVLFLSLAASQKAWRGGFIAGVLRYLFVLATDARELPPSPIGPAGRWVAKIAALASVAALAASVGNGALRNGGGGGDADTAVFERTGGRGWWVRGGAEGSSPLLCAVGVAVLCASFSIDFFQIWVLLPREEAA 768
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14860.2897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTS5_ECTSI4.690e-3451.67Glycos_transf_1 domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14860contigH-paniculata_contig14860:43..1654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlycosyl transferase, family 1
Ec32 orthologEc-14_001010.1
Exons2
Model size1243
Cds size603
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14860.2897.1prot_H-paniculata_contig14860.2897.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14860 644..1615 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929184.0246274-UTR-H-paniculata_contig14860:42..6431622929184.0246274-UTR-H-paniculata_contig14860:42..643Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14860 43..643 -
1691480763.4767816-UTR-H-paniculata_contig14860:42..6431691480763.4767816-UTR-H-paniculata_contig14860:42..643Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14860 43..643 -
1622929187.2260606-UTR-H-paniculata_contig14860:1615..16541622929187.2260606-UTR-H-paniculata_contig14860:1615..1654Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14860 1616..1654 -
1691480763.5171318-UTR-H-paniculata_contig14860:1615..16541691480763.5171318-UTR-H-paniculata_contig14860:1615..1654Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14860 1616..1654 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929184.0401502-CDS-H-paniculata_contig14860:643..11051622929184.0401502-CDS-H-paniculata_contig14860:643..1105Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14860 644..1105 -
1691480763.4885738-CDS-H-paniculata_contig14860:643..11051691480763.4885738-CDS-H-paniculata_contig14860:643..1105Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14860 644..1105 -
1622929184.0550234-CDS-H-paniculata_contig14860:1474..16151622929184.0550234-CDS-H-paniculata_contig14860:1474..1615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14860 1475..1615 -
1691480763.5049791-CDS-H-paniculata_contig14860:1474..16151691480763.5049791-CDS-H-paniculata_contig14860:1474..1615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14860 1475..1615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14860.2897.1

>prot_H-paniculata_contig14860.2897.1 ID=prot_H-paniculata_contig14860.2897.1|Name=mRNA_H-paniculata_contig14860.2897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=201bp
MSFVALGMTDQELVRRSKTRPTNVRTTLDAESDSMAVLVLSLATSRRVWF
GGIVDGMFRYLFVLATGARELPLSPIGSTGRLFAKVAALASVAALALTGT
GRSGGIGAGVGSVLAEVEVARQGLFSALLCSPSPFLCMAGVAVLRASYSV
DFCQIGVVLPPEKAAKVTTAVVAVGVVYGKTVDTKGVCDGEWHGGCASSV
*
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mRNA from alignment at H-paniculata_contig14860:43..1654-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14860.2897.1 ID=mRNA_H-paniculata_contig14860.2897.1|Name=mRNA_H-paniculata_contig14860.2897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1612bp|location=Sequence derived from alignment at H-paniculata_contig14860:43..1654- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGGAAGTCGCTCTGAAACGAACGTGTCTACCTTAATTATGTCATTTGT
GGCGCTAGGTATGACTGACCAAGAGCTGGTGCGGCGATCCAAGACTCGGC
CGACAAATGTTAGAACGACGCTAGACGCGGAGAGCGACTCGATGGCGGTG
CTTGTTCTCAGCCTTGCGACGAGCCGAAGGGTGGGCGGAATTCACCTCAT
CGTAGCACATAGAGGTAATCTGGTTGCATCTTGATCCCTGACAGAGGGTG
ATTGTTGTAGAACGCTTGTCTAGCTCGTCCGTGCCGGTAGGAAATTGATT
AAACGTGCCTCCGTGGTTACCTTACAGACTAGAGTTTTTTATGTGTCGAA
ACTCTTAGTCGGCCATCGCGACCAAGCCGTAACTGCGCAACTGGCAACGA
CCGCCTAGTCCTCGATGAGTATCAAGGGTGCTGTGTATCCACAATACGTC
GTTCATGACTACCTCCATCCCTCGACTTTATCTGTTGCCGTTCCGTGGCC
GCGACGACGCCAATCCGCCTCTCTCATCGGCGCGCTCTGAACAATGCAGG
TGTGGTTCGGTGGTATAGTCGATGGCATGTTTCGCTACCTCTTCGTGCTC
GCCACGGGGGCTCGCGAACTGCCTCTTTCACCCATCGGTTCCACCGGCCG
GTTGTTTGCCAAAGTCGCCGCTCTTGCTAGCGTAGCAGCACTGGCACTCA
CGGGAACCGGCCGCAGCGGTGGCATAGGCGCCGGGGTGGGCTCTGTGTTG
GCAGAAGTCGAAGTAGCGCGCCAGGGGTTATTTTCTGCATTGCTTTGTTC
TCCGTCCCCGTTCTTGTGTATGGCCGGCGTGGCCGTGCTGCGCGCGAGCT
ATTCGGTCGACTTTTGCCAGATCGGCGTCGTCTTGCCGCCCGAAAAAGCT
GCGAAGGTGACGACGGCGGTAGTGGCGGTAGGGGTTGTTTACGGTAAAAC
AGTAGACACAAAGGGCGTCTGTGATGGAGAATGGCACGGCGGCTGTGCCT
CCTCGGTGTGAGATGTGCGAGGTGTCGCCCCCACAAAGAGGGTATGATAG
CTGTAGCTCTGGACAATGGAAATGTGTAGCTGAGCGAGCGAGATGGTGAG
TACGTCTTAGTGCGTCCGTAACGGTGATACGTCTGGTTGTGATAATAGAG
TCGAGGAATCTAATCAGCTCAATGATGCGGGATGCGGCAATTTGTTCTGT
CTGCTTACAGGATTATATGTCAGGGTTCGCAGATGATGGCGTTTATATCT
TCGTTACGACGATATTGGACGGCAAGTCACCGCTGGGGTTATAGAAGAAA
GCGCTGTCGTGCTTTACGGAAGAGTAGCATTTACTGTCGGGTATGCTGCA
CACCATAGGGTCAGATACAGTTGCTTCAATTGTAATACTTGAGGTTACCC
ATGTTTGAAGTCACAGGACCCAGAGCATTTGTGTACGTACGTCAGACCCT
GCTTTCGAGCGGAGCCTCTCATCATGTGTGTGTGTGTGTGAACCGTCTCA
CCACATAAATAGTAATATTTGATGGGACGAATACCGTCTCGCGGTTGGGA
GGCAGCGTTTCAGTTGGGTATTTTTTACGCCCCATTTTTATTTTAACCCC
CGGAAGGCTGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14860:43..1654-

>mRNA_H-paniculata_contig14860.2897.1 ID=mRNA_H-paniculata_contig14860.2897.1|Name=mRNA_H-paniculata_contig14860.2897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1206bp|location=Sequence derived from alignment at H-paniculata_contig14860:43..1654- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATTTGTGGCGCTAGGTATGACTGACCAAGAGCTGGTGCGGCGATC
CAAGACTCGGCCGACAAATGTTAGAACGACGCTAGACGCGGAGAGCGACT
CGATGGCGGTGCTTGTTCTCAGCCTTGCGACGAGCCGAAGGATGTCATTT
GTGGCGCTAGGTATGACTGACCAAGAGCTGGTGCGGCGATCCAAGACTCG
GCCGACAAATGTTAGAACGACGCTAGACGCGGAGAGCGACTCGATGGCGG
TGCTTGTTCTCAGCCTTGCGACGAGCCGAAGGGTGTGGTTCGGTGGTATA
GTCGATGGCATGTTTCGCTACCTCTTCGTGCTCGCCACGGGGGCTCGCGA
ACTGCCTCTTTCACCCATCGGTTCCACCGGCCGGTTGTTTGCCAAAGTCG
CCGCTCTTGCTAGCGTAGCAGCACTGGCACTCACGGGAACCGGCCGCAGC
GGTGGCATAGGCGCCGGGGTGGGCTCTGTGTTGGCAGAAGTCGAAGTAGC
GCGCCAGGGGTTATTTTCTGCATTGCTTTGTTCTCCGTCCCCGTTCTTGT
GTATGGCCGGCGTGGCCGTGCTGCGCGCGAGCTATTCGGTCGACTTTTGC
CAGATCGGCGTCGTCTTGCCGCCCGAAAAAGCTGCGAAGGTGACGACGGC
GGTAGTGGCGGTAGGGGTTGTTTACGGTAAAACAGTAGACACAAAGGGCG
TCTGTGATGGAGAATGGCACGGCGGCTGTGCCTCCTCGGTGTGAGTGTGG
TTCGGTGGTATAGTCGATGGCATGTTTCGCTACCTCTTCGTGCTCGCCAC
GGGGGCTCGCGAACTGCCTCTTTCACCCATCGGTTCCACCGGCCGGTTGT
TTGCCAAAGTCGCCGCTCTTGCTAGCGTAGCAGCACTGGCACTCACGGGA
ACCGGCCGCAGCGGTGGCATAGGCGCCGGGGTGGGCTCTGTGTTGGCAGA
AGTCGAAGTAGCGCGCCAGGGGTTATTTTCTGCATTGCTTTGTTCTCCGT
CCCCGTTCTTGTGTATGGCCGGCGTGGCCGTGCTGCGCGCGAGCTATTCG
GTCGACTTTTGCCAGATCGGCGTCGTCTTGCCGCCCGAAAAAGCTGCGAA
GGTGACGACGGCGGTAGTGGCGGTAGGGGTTGTTTACGGTAAAACAGTAG
ACACAAAGGGCGTCTGTGATGGAGAATGGCACGGCGGCTGTGCCTCCTCG
GTGTGA
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