mRNA_H-paniculata_contig1486.2893.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1486.2893.1
Unique NamemRNA_H-paniculata_contig1486.2893.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1486.2893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1486contigH-paniculata_contig1486:7775..8869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size786
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1486.2893.1prot_H-paniculata_contig1486.2893.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1486 7940..8335 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929182.6494381-UTR-H-paniculata_contig1486:7774..79391622929182.6494381-UTR-H-paniculata_contig1486:7774..7939Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1486 7775..7939 +
1691480763.2769797-UTR-H-paniculata_contig1486:7774..79391691480763.2769797-UTR-H-paniculata_contig1486:7774..7939Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1486 7775..7939 +
1622929182.6791878-UTR-H-paniculata_contig1486:8335..84211622929182.6791878-UTR-H-paniculata_contig1486:8335..8421Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1486 8336..8421 +
1691480763.2964828-UTR-H-paniculata_contig1486:8335..84211691480763.2964828-UTR-H-paniculata_contig1486:8335..8421Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1486 8336..8421 +
1622929182.913931-UTR-H-paniculata_contig1486:8730..88691622929182.913931-UTR-H-paniculata_contig1486:8730..8869Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1486 8731..8869 +
1691480763.3072505-UTR-H-paniculata_contig1486:8730..88691691480763.3072505-UTR-H-paniculata_contig1486:8730..8869Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1486 8731..8869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929182.6644905-CDS-H-paniculata_contig1486:7939..83351622929182.6644905-CDS-H-paniculata_contig1486:7939..8335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1486 7940..8335 +
1691480763.287838-CDS-H-paniculata_contig1486:7939..83351691480763.287838-CDS-H-paniculata_contig1486:7939..8335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1486 7940..8335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1486.2893.1

>prot_H-paniculata_contig1486.2893.1 ID=prot_H-paniculata_contig1486.2893.1|Name=mRNA_H-paniculata_contig1486.2893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MRRRQPAWLLIANKAAREAARVEAGTAAEAQAEIARREAEFSRRETEFAS
ARAAQDELMAAFGTLIEPELNVDTCEKVLREQKRVRFHTAAEHREVISAR
AARNKLAPQQVALLDTSQSRAIITVYLNLVQ*
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mRNA from alignment at H-paniculata_contig1486:7775..8869+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1486.2893.1 ID=mRNA_H-paniculata_contig1486.2893.1|Name=mRNA_H-paniculata_contig1486.2893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1095bp|location=Sequence derived from alignment at H-paniculata_contig1486:7775..8869+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTTGGCGCGGTGCGCCCCCTTTAGTAGGGGCAGTTGAATCTCAGGCAGG
TACGGCATGATGGCTGCGAATAAGCGCCAGAGCAAAGCTGACCCGCGAAG
CACACGGAAGTGTAGAAGGAACGCCAATGGCAAGCTTGACACTGCAAACT
TGGTGAAGATGGTCGATGCGAAGGAGGCAGCCTGCATGGCTGCTGATAGC
CAACAAGGCGGCACGTGAGGCAGCCAGAGTTGAGGCAGGGACTGCAGCCG
AAGCTCAAGCAGAGATTGCCAGACGCGAGGCAGAGTTTTCCAGACGCGAG
ACAGAGTTTGCCAGCGCTAGGGCAGCGCAAGATGAGCTCATGGCAGCGTT
CGGTACGCTTATTGAGCCTGAGCTAAACGTTGATACATGCGAGAAGGTAC
TGAGGGAACAGAAGCGTGTTCGTTTCCACACGGCAGCCGAGCACCGCGAG
GTGATTTCGGCTAGGGCAGCGCGCAATAAGCTGGCTCCTCAGCAGGTAGC
GCTGTTGGATACGTCACAGTCCCGGGCTATCATTACGGTGTACTTGAATC
TCGTCCAGTGAGGCTATGGACCGAAACCCCGCTGTAAGGGAGGCCGCCAG
GGTGATGCGCATTGCACCAAAGGTGTTCGAGGTACCTACTATCTGAAGTG
AGTATAGATAGTCTACAAACATCGTTTCGGAACAGTTTTCACACACGATG
TCCAATTTTTTTACTGTACAGTGTGTCTTGTACTCTCTGTTGTGTCGACG
TTACTTTGAAAATACTGATTCGATTGCCCCTCAGCGAAGTAACGTGCTCA
ATTTTTGTACTCCCCATACTCTGAAGTTGCGGATGTTCTGTATGGAGTGA
GAATGTTCAATATTTTGTAGCTTGTTGTGTGTGTCATGTTACGCAGTGCC
AATTGTGTTTTGGGTGAAATTTTAACGTTTGCACTTTCCGCCTGCGCGGT
GAACAGGTTCCCACTTTATGGGAGGATCAGAAGTCGCTCAAGACAACATC
AGCGGAGGGGGAAAGCAGTATGTCAGCTTTAATTTCGACATAAAGCGTAC
TATGAAGTAAGTGTGGGAGCAGGTTCGGAAGGCTTGGTATGGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1486:7775..8869+

>mRNA_H-paniculata_contig1486.2893.1 ID=mRNA_H-paniculata_contig1486.2893.1|Name=mRNA_H-paniculata_contig1486.2893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig1486:7775..8869+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAAGGAGGCAGCCTGCATGGCTGCTGATAGCCAACAAGGCGGCACG
TGAGGCAGCCAGAGTTGAGGCAGGGACTGCAGCCGAAGCTCAAGCAGAGA
TTGCCAGACGCGAGGCAGAGTTTTCCAGACGCGAGACAGAGTTTGCCAGC
GCTAGGGCAGCGCAAGATGAGCTCATGGCAGCGTTCGGTACGCTTATTGA
GCCTGAGCTAAACGTTGATACATGCGAGAAGGTACTGAGGGAACAGAAGC
GTGTTCGTTTCCACACGGCAGCCGAGCACCGCGAGGTGATTTCGGCTAGG
GCAGCGCGCAATAAGCTGGCTCCTCAGCAGGTAGCGCTGTTGGATACGTC
ACAGTCCCGGGCTATCATTACGGTGTACTTGAATCTCGTCCAGTGAATGC
GAAGGAGGCAGCCTGCATGGCTGCTGATAGCCAACAAGGCGGCACGTGAG
GCAGCCAGAGTTGAGGCAGGGACTGCAGCCGAAGCTCAAGCAGAGATTGC
CAGACGCGAGGCAGAGTTTTCCAGACGCGAGACAGAGTTTGCCAGCGCTA
GGGCAGCGCAAGATGAGCTCATGGCAGCGTTCGGTACGCTTATTGAGCCT
GAGCTAAACGTTGATACATGCGAGAAGGTACTGAGGGAACAGAAGCGTGT
TCGTTTCCACACGGCAGCCGAGCACCGCGAGGTGATTTCGGCTAGGGCAG
CGCGCAATAAGCTGGCTCCTCAGCAGGTAGCGCTGTTGGATACGTCACAG
TCCCGGGCTATCATTACGGTGTACTTGAATCTCGTCCAGTGA
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