mRNA_H-paniculata_contig148.2862.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig148.2862.1
Unique NamemRNA_H-paniculata_contig148.2862.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig148.2862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig148contigH-paniculata_contig148:23651..25479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size230
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929177.9454455-CDS-H-paniculata_contig148:23650..237671622929177.9454455-CDS-H-paniculata_contig148:23650..23767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig148 23651..23767 +
1691480761.4072394-CDS-H-paniculata_contig148:23650..237671691480761.4072394-CDS-H-paniculata_contig148:23650..23767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig148 23651..23767 +
1622929177.9591317-CDS-H-paniculata_contig148:25368..254791622929177.9591317-CDS-H-paniculata_contig148:25368..25479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig148 25369..25479 +
1691480761.421116-CDS-H-paniculata_contig148:25368..254791691480761.421116-CDS-H-paniculata_contig148:25368..25479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig148 25369..25479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig148.2862.1prot_H-paniculata_contig148.2862.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig148 23651..25479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig148.2862.1

>prot_H-paniculata_contig148.2862.1 ID=prot_H-paniculata_contig148.2862.1|Name=mRNA_H-paniculata_contig148.2862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
PSLQRFKGSGSHEVISRRSAVRKAVDPHVFLGDDDDHQKVALPVLGVAFN
AAHTPGGEKPQVDVCRGTNRIGAEM*
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mRNA from alignment at H-paniculata_contig148:23651..25479+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig148.2862.1 ID=mRNA_H-paniculata_contig148.2862.1|Name=mRNA_H-paniculata_contig148.2862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1829bp|location=Sequence derived from alignment at H-paniculata_contig148:23651..25479+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAAGCCTTCAACGTTTCAAAGGATCTGGATCTCACGAGGTCATCAGTCG
GAGGTCAGCCGTGAGGAAGGCCGTGGATCCTCACGTTTTTTTAGGCGACG
ACGACGACCATCAGAAGGTGAGTCTTTTAGACGGCGGAGATGACAGCTCC
CTTCGAAGATATTATTGAATTCGTCGGTAGAATTCCCGCAAATCAAGCAC
TGCGGGACGAGTCTAAGCCTTCGGGTAGGGCACGGCTAGAGGGTAACCTT
TGCCGATGACCGGACAGGAGTTGAGATTAAGGGTCTTAACGTGTGAGGAT
TCTGCACTTTGCGGGTGCAGTCTAAACCGTATGCTAAAACGGCCAAGTCA
TGTACAACCCAGCGACCGAAGGCGGTCCTGGACGGCTATCCCATAATATA
CCCAAGGTTTGAGCTTCCGAAGGGTTGACCGACAAGACAATACTCCATGC
GTTCTGCATGCGTCTGGAATCGGAACACGGTAAAAAGTGTTGTGGGCTTA
AGCTTCTTCCCTCTCGATGCTGCTGATACAGAAAAAAAAAATTGTCTGGG
GTAGAAAGAAAAAGAAAAAAAGCACTGCGGTATATCAATGCAGCATCAGC
ACCTCGGACCCAACCCTATATTTCCGACTAGTAGTACAATCGATGGATGC
AAAGTCAGCGAGTAATACCCATCGGGATGAAATGTTCAAACGTCCATCTT
AATCTGCTGTTATCGTCGTTATCTGGAACGACGTTGTCCCGCGGTCCGAA
ACGGCTACGTTTATCTACCGAGCGAAAGTACCACGACCATTTATCTTTAC
GTCGGTAGGTTTTGGGTTTTTGGGATCTCGAGTCCGCCATGTTCTTGCCA
TATGCCATGGCTTTGCCGTGATTAAATGGTATGAATTCCTAGTTTTCGCA
AAGCCGCTGGATCTATACGTGCTTTCACATCTCTTGATTTTTACGGTAAA
TTCACCGAAGAACACCCTGTGCTTATGAAATCTCTCGTGTGTTCGGGTAA
TTTCACACCGCGCACCACGGCGCAGTACGCTGATCGTACGGAACTCAAGC
GGGCGTTCTCGTATCACGAGGTAAGGGGAAATATTTTATTCGGTTAGGTA
AATACAATGTCTGAATTGCTACACTTCATTGATCTTTGAGATGGTGTCAA
ACACCCCAGACAATAATTGTTGTCCATCTCTTGAAACCCTTTCAAGTGCG
TCGCATCGGGCACAAAATCATTTTCGCAATACCGCACATGTGATATCTCT
CCTGCGCTACAGATTGTATCCGCGTGTTCGGTGAAAAAATCAAGTTGTTG
ACGGTGGACGCAAATAAAATGAGAGACAACTGTGCGGAGGAGCACGAGGA
GCTGAAGGCCGCCAACCTGTTCGAGATTCACTGACAGACTCGTTTCGACG
AACTGGCGAGTGTACGGCAAAGTAGCTCCTCCTTCTCGTGTTTTGTTTCC
CTTCACCTTCTAAAATGTATATCCTTCTCCCGACGTCTACTAACGTCTGC
GTTAGCACTAGCAAGCACTGAATGGAATGGGTGTGCGCATAGTGTTAGTC
GCGCATAGCTCTACCGGTAGCTATGTTCTCAAGTATCGTATGTAGCAGTA
CAATTATTGCTACGGCGTGCTTACTAATTGGACTGTGTACGCCCCTCTCT
TCACGGTACCGGCGTCGCGGCCTGGGTATGTAGCCCTAACCACCGCCCTC
CCTACATTATGGACACAGGTCGCACTACCCGTCCTGGGCGTGGCATTCAA
CGCTGCCCATACCCCCGGTGGAGAAAAACCTCAAGTGGACGTCTGTAGGG
GCACTAACCGCATAGGCGCTGAGATGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig148:23651..25479+

>mRNA_H-paniculata_contig148.2862.1 ID=mRNA_H-paniculata_contig148.2862.1|Name=mRNA_H-paniculata_contig148.2862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig148:23651..25479+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAAGCCTTCAACGTTTCAAAGGATCTGGATCTCACGAGGTCATCAGTCG
GAGGTCAGCCGTGAGGAAGGCCGTGGATCCTCACGTTTTTTTAGGCGACG
ACGACGACCATCAGAAGCCAAGCCTTCAACGTTTCAAAGGATCTGGATCT
CACGAGGTCATCAGTCGGAGGTCAGCCGTGAGGAAGGCCGTGGATCCTCA
CGTTTTTTTAGGCGACGACGACGACCATCAGAAGGTCGCACTACCCGTCC
TGGGCGTGGCATTCAACGCTGCCCATACCCCCGGTGGAGAAAAACCTCAA
GTGGACGTCTGTAGGGGCACTAACCGCATAGGCGCTGAGATGTGAGTCGC
ACTACCCGTCCTGGGCGTGGCATTCAACGCTGCCCATACCCCCGGTGGAG
AAAAACCTCAAGTGGACGTCTGTAGGGGCACTAACCGCATAGGCGCTGAG
ATGTGA
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