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Homology
BLAST of mRNA_H-paniculata_contig14780.2852.1 vs. uniprot
Match: A0A6H5JGI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGI5_9PHAE) HSP 1 Score: 213 bits (541), Expect = 1.810e-58 Identity = 115/164 (70.12%), Postives = 136/164 (82.93%), Query Frame = 2
Query: 614 KSVLGKAGDAIKAAFNAVMAAGTLASLVLAAETIWELHGTPLTFANALPTLTKLLPLTGIGVLGAAQLVGVVARVTRVIVTLPIMVSGTWVILQSVPQLLPKGSDLSGAGSLAAILATPEVLETAAVLAFLSGMVLWAVNFTRGAVTALSAAAFPTNGDDNDDD 1105
KSVL KAG+A+KAAFNA MAA TLASL LAAE +W+LHG PLT +NA+PTLTKLLPLTGIGV GAAQLVG+VARV RVIVTLP+MVSGTWVILQ+ P+L PKG DL+GAGSLAA+LATPEVLE AAV+A L G +WA+NF GAV AL ++ ++ ++D
Sbjct: 185 KSVLEKAGNALKAAFNAFMAASTLASLALAAEAVWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPVMVSGTWVILQNAPKLFPKGLDLTGAGSLAALLATPEVLEAAAVIALLGGTAIWALNFATGAVGALMPGQSKSSREEEEED 348
BLAST of mRNA_H-paniculata_contig14780.2852.1 vs. uniprot
Match: D7FYX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX7_ECTSI) HSP 1 Score: 144 bits (364), Expect = 7.590e-35 Identity = 78/98 (79.59%), Postives = 88/98 (89.80%), Query Frame = 2
Query: 614 KSVLGKAGDAIKAAFNAVMAAGTLASLVLAAETIWELHGTPLTFANALPTLTKLLPLTGIGVLGAAQLVGVVARVTRVIVTLPIMVSGTWVILQSVPQ 907
K VL KAG+A+KAAFNA MAA TLASLVLAAE +W+LHG PLT +NA+PTLTKLLPLTGIGV GAAQLVG+VARV RVIVTLP+MVSGTWVILQ+ P+
Sbjct: 186 KPVLEKAGNALKAAFNAFMAASTLASLVLAAEAVWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPVMVSGTWVILQNAPK 283
BLAST of mRNA_H-paniculata_contig14780.2852.1 vs. uniprot
Match: A0A836CM52_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM52_9STRA) HSP 1 Score: 109 bits (272), Expect = 9.020e-24 Identity = 68/159 (42.77%), Postives = 103/159 (64.78%), Query Frame = 2
Query: 635 GDAIKAAFNAVMAAGTLASLVLAAETIWELHGTPLTFANALPTLTKLLPLTGIGVLGAAQLVGVVARVTRVIVTLPIMVSGTWVILQSVPQLLPKGSDLSGAGSLAAILATPEVLETAAVLAFLSGMVLWAVNFTRGAVTALSAAAFPTNGDDNDDDYD 1111
G+ +++A+N ++ A T+AS+VLA + + +L P+T L TL LLPL GV GAA+LV V+ R+ RV+VT+P+++ G ++ S+P LL DL+ G L A+LATPEVLE A++A + G +W V G VT + A+ +GDD+DD+YD
Sbjct: 27 GEVVRSAWNGLLVALTVASVVLAVDAVVKLKTQPIT----LDTLGNLLPLAAFGVAGAARLVAVLLRLVRVLVTVPVVLGGAYLAAPSIPDLLKHSPDLA-TGGLFAVLATPEVLEAIALIAVIVGAGIWIVRQLAGMVTGM-ASVRGNDGDDSDDEYD 179
BLAST of mRNA_H-paniculata_contig14780.2852.1 vs. uniprot
Match: A0A7S2V4B2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4B2_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 2.010e-9 Identity = 38/129 (29.46%), Postives = 70/129 (54.26%), Query Frame = 2
Query: 638 DAIKAAFNAVMAAGTLASLVLAAETIWELHGTPLTFANALPTLTKLLPLTGIGVLGAAQLVGVVARVTRVIVTLPIMVSGTWVILQSVPQLLPKGSDLSGAGSLAAILATPEVLETAAVLAFLSGMVLW 1024
D+ K AF ++ + S+ A +++L+ P T +N T+T +LP G G +L+G R+ R+++++PI+V GTW + +P+ + DL+ SL I A PE++E ++ F+ + W
Sbjct: 128 DSAKKAFGFLLVGVAIYSVYTAGTAVYKLYTEPFTLSNLGSTVTNVLPALTFGYFGTLKLIGAFMRLVRILLSVPIVVGGTWFLAPRLPEFIQSSPDLAST-SLLGIFAVPEIVEAIILILFVGSFLFW 255
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal peptide |
Ec32 ortholog description | hypothetical protein |
Ec32 ortholog | Ec-19_002870.1 |
Exons | 3 |
Model size | 2446 |
Cds size | 1041 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14780.2852.1 >prot_H-paniculata_contig14780.2852.1 ID=prot_H-paniculata_contig14780.2852.1|Name=mRNA_H-paniculata_contig14780.2852.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=347bp
MITRRRVGGAIYCQPRGGTVLLHRALVLVGCVLVCQARQLLAFGTPQHLP LRPPFINAAIRFPRLWRMSPASPCTWGLPAAQQHRLQRRLPHLRRRRGST IVSPLAMWAPREETRPKQLYQGEQDDDGGGSHQEEGGQMAERTNTYSFND SVDGIDNHKEGDRKTSASKRKNYRKKAEKEKSVLGKAGDAIKAAFNAVMA AGTLASLVLAAETIWELHGTPLTFANALPTLTKLLPLTGIGVLGAAQLVG VVARVTRVIVTLPIMVSGTWVILQSVPQLLPKGSDLSGAGSLAAILATPE VLETAAVLAFLSGMVLWAVNFTRGAVTALSAAAFPTNGDDNDDDYD* back to topmRNA from alignment at H-paniculata_contig14780:213..3666+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig14780.2852.1 ID=mRNA_H-paniculata_contig14780.2852.1|Name=mRNA_H-paniculata_contig14780.2852.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3454bp|location=Sequence derived from alignment at H-paniculata_contig14780:213..3666+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CGACTCTAGTCTAGTACAGAGGACACAGGAGGAGAGGAAAGTCGTGAGCT
AAGCCGGTGGTGGTGGCAATAAAATGATAACTAGACGGCGTGTTGGTGGT
GCTATTTATTGTCAACCTCGTGGTGGAACAGTTCTCCTGCATCGGGCACT
CGTGCTCGTAGGTTGTGTACTGGTTTGTCAAGCTCGGCAACTGCTAGGTG
AGCAACACTCAACAGCAGCAGCAGTCAGTGCTGTCTGTCATGCTCTCCAT
CCTGAGTGGGCCAATGTCAATGATAGTCAGAAAGACCGTGTCTTGCATTG
ACTGAAGGCTTTTCGTGGGTGGGGAAGGATGGTTGAACTTGCAGCCTTTG
AAGGCATTATACCACTCATGTCCTTCAGCCGCCAAACTTCATGATAGCGC
ATGGTATTGTTAGTCAGTGCGCTGGACAGCACATTGAATTGATTTCTTGT
GAGTGTCGCAAGATCCCTCAGCGCTAATAACATCCCTACGTGCATAAAGT
ACAGTCCTACTACCACCGCGGGTGCCGTTGAGTTTATATCTCTGTTTCAT
ACGCTTGTACCCAAAACATCTGGGGTGGAGTTTTTGCACGTGTCACCATC
TTTATCTCTCTTCAACTTGATAGGGTTCATGTTTTCCCTTGTTTTCGGGG
CCTCTTCACCTCGTTGTATCGCACGAACTGGTTGCAAAATTCACAGCCTT
CGGTACACCGCAGCATCTGCCGCTACGCCCTCCCTTCATCAACGCGGCGA
TACGGTTCCCTAGACTGTGGAGAATGTCCCCCGCGTCACCATGCACTTGG
GGACTACCGGCAGCCCAGCAACACCGTCTACAACGACGACTCCCGCATCT
CCGGAGAAGGCGTGGGAGTACCATCGTTTCACCACTAGCCATGTGGGCAC
CGCGAGAGGAAACGCGACCTAAGCAACTCTATCAAGGAGAACAAGACGAT
GATGGAGGTGGATCACACCAAGAAGAGGGCGGGCAAATGGCTGAGAGGAC
GAATACATACTCATTTAACGACTCTGTTGACGGTATCGACAACCATAAGG
AGGGAGACCGTAAAACGAGCGCGTCGAAGAGAAAGAATTATCGAAAGAAG
GCAGAAAAGGAGAAATCGGTGCTCGGAAAAGCCGGCGATGCAATCAAGGC
GGCGTTCAACGCCGTAATGGCGGCCGGTACGTTAGCGTCCCTCGTATTAG
CGGCGGAGACCATTTGGGAGCTCCACGGGACGCCGCTGACGTTCGCGAAC
GCGCTGCCGACGTTAACCAAGCTCCTTCCGCTCACCGGCATTGGGGTGTT
GGGCGCGGCGCAGTTGGTCGGCGTGGTGGCGCGAGTCACCAGGGTGATCG
TGACGTTGCCTATTATGGTCAGCGGTACTTGGGTCATTCTGCAGAGCGTC
CCACAGGTACCTTCTTTTTCGTATTGTGATTATTTCCCTTTGCAAAGCTG
TGATACAATTATCAGGAAAATTTCACAGGTTGGTACAATTGTACGTCCCG
GTACGTAGTACTATAACAATATTGGGTGTTTTGAGATTGTGGATACCGTG
GCTCTGTACGGTAAGAACATTGAAAACTTGTGGAAAATAATACCACTTTG
ATCACTGTTGTACTTGTTGTGAGACCACTGGATATTTCCAGGTCACAATA
ACTGTTTATCTCTATCTCTCTCTCTCCCTCTGTGTGTGTGTGTTAACCAT
TGTTTTCAACACGGTCGACCAAACTCCGCAATGAAACAGCACAAATCGTA
CACATTGAAAAACGCCTTCCGTGTAGGTGGTTTCACACCTCAACCAACCA
ACCAGCCATCCAATCAATCAACAAACGAATCTCAAATCCTGATCGTGTCT
CTATCCAATTATGTAGTAACTCACTCACCCCTTTTTTTGGTCTTGTTTAT
GCTCGTCGTTTTCAGCTGTTGCCCAAGGGGTCGGATCTTTCGGGAGCAGG
GTCCCTTGCTGCAATCTTGGCGACTCCCGAAGTATTGGAGACGGCTGCTG
TCTTGGCTTTTCTATCAGGGATGGTATTATGGGCGGTCAACTTTACGCGT
GGCGCTGTGACGGCGTTGAGTGCCGCGGCGTTTCCGACAAACGGAGATGA
CAACGACGACGACTATGACTGATAATGACGATGTATTCAAAGAGAAGGGG
TCGGGTGGGCTTCCGATTTCACGGGTGCTGTTCGTATAAGAATTAGTTCA
CTTCTGGCCTTGCATGTGTCTCTCGGGGAGGAAACGCCGTAGGTCCTCCT
GTCTAAGTACTCCCTGAGTTATCGAGGTAGCCGAGTTTTAGAATTACCTT
CCTGTGCCTGGAGATTGGGCCGAATTTTCCAGAGGTGATACTGTGTGCGA
TTATCATATCTTCGTGTACACTAACTACTGTAGAGACAGACATTTCGTGA
CAGCAGTTTTCCTATTGGTCCAACTTTAAAAAAAAAAAGAATGATAGGAT
TGGTTGACAATTGCGAAGCAGCGATAAAGGCGGGTACTTTCAGGGTTTGT
ATCGGAGATATGGCTTTTGTTTTTATATTCCATGACTGGGGCAGGAAGGG
GGGGGAAGGATGCATTTGACTGTCAGGATGAATGTGCACTATTTTTTCCC
CGGACGCGAGGTCGCAAAACGTTGTTATTGGTTTCATCGCCGCAGTTGAG
TTCTGTCTCCTCCGACCATACTGTTTTTGAGAGTTAGAAACAAGAGTTTC
ATGGTTACAAAGCGAATTTTGGTACGGCGGCTGGGCGAGGGGGGCAGCAT
CATGTCGCGTGCCATGACTCAAGAATAGGCGAGAGGTCGGTAGGTGGGTA
GTCAGGTGAGTTGTACATGTTCAGATGGCCTAGATATTAGATCATGGTAG
TGTTTAGTTCATTATAGACGGTAAGTACAATGGCAGGGTTCTGCACGCGG
CGACTGCAACGCTCGACGTTGACTTATTCCCAGACCCATGTTTTCTTTGT
TTCGCAGCAACAGCAATATAAGCAGCCTTCGGCGCCAATGATTCAAGGTG
GAACCTCACAGCATACGGGATGGACGGATGGACGGATGGACGGGTGGCAT
ACACATGTCGCGGTGTCCAGCGATGTACGATGCTCGACACAAGTTTTCAT
TTTGCTTTTTGCTTTGCTCGCCGCGGCAGTCAACGCGAAAGGCGAGGGAG
TCGCACGCGTCAAATCACACCTATCTTGTTGGTGTCGTCTAAGGCTTCGA
TGGATAACAAGGGCCTTCATTTCGGCTGACTCTTGGACTTTTGCGTCCTG
CTTTCAGGCCGGCCGTTCAATTCAGTCAATCTCTCTTTTCCATACGTAGT
AACACTGTGTACTGTTGTAGAAGTTTAGGGTGGCTTTTTACTTTAGAATG
AGACGTGCTATCACGATTTTTACGATATCACGTGCTGAATCAAGGATGAC
TCGAACAGAGTTGGTACAAGAACATGGCACCAGCGTTCGTTGGGTGTTGG
CGTT back to topCoding sequence (CDS) from alignment at H-paniculata_contig14780:213..3666+ >mRNA_H-paniculata_contig14780.2852.1 ID=mRNA_H-paniculata_contig14780.2852.1|Name=mRNA_H-paniculata_contig14780.2852.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2082bp|location=Sequence derived from alignment at H-paniculata_contig14780:213..3666+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGATAACTAGACGGCGTGTTGGTGGTGCTATTTATTGTCAACCTCGTGG TGGAACAGTTCTCCTGCATCGGGCACTCGTGCTCGTAGGTTGTGTACTGG TTTGTCAAGCTCGGCAACTGCTAGATGATAACTAGACGGCGTGTTGGTGG TGCTATTTATTGTCAACCTCGTGGTGGAACAGTTCTCCTGCATCGGGCAC TCGTGCTCGTAGGTTGTGTACTGGTTTGTCAAGCTCGGCAACTGCTAGCC TTCGGTACACCGCAGCATCTGCCGCTACGCCCTCCCTTCATCAACGCGGC GATACGGTTCCCTAGACTGTGGAGAATGTCCCCCGCGTCACCATGCACTT GGGGACTACCGGCAGCCCAGCAACACCGTCTACAACGACGACTCCCGCAT CTCCGGAGAAGGCGTGGGAGTACCATCGTTTCACCACTAGCCATGTGGGC ACCGCGAGAGGAAACGCGACCTAAGCAACTCTATCAAGGAGAACAAGACG ATGATGGAGGTGGATCACACCAAGAAGAGGGCGGGCAAATGGCTGAGAGG ACGAATACATACTCATTTAACGACTCTGTTGACGGTATCGACAACCATAA GGAGGGAGACCGTAAAACGAGCGCGTCGAAGAGAAAGAATTATCGAAAGA AGGCAGAAAAGGAGAAATCGGTGCTCGGAAAAGCCGGCGATGCAATCAAG GCGGCGTTCAACGCCGTAATGGCGGCCGGTACGTTAGCGTCCCTCGTATT AGCGGCGGAGACCATTTGGGAGCTCCACGGGACGCCGCTGACGTTCGCGA ACGCGCTGCCGACGTTAACCAAGCTCCTTCCGCTCACCGGCATTGGGGTG TTGGGCGCGGCGCAGTTGGTCGGCGTGGTGGCGCGAGTCACCAGGGTGAT CGTGACGTTGCCTATTATGGTCAGCGGTACTTGGGTCATTCTGCAGAGCG TCCCACAGCCTTCGGTACACCGCAGCATCTGCCGCTACGCCCTCCCTTCA TCAACGCGGCGATACGGTTCCCTAGACTGTGGAGAATGTCCCCCGCGTCA CCATGCACTTGGGGACTACCGGCAGCCCAGCAACACCGTCTACAACGACG ACTCCCGCATCTCCGGAGAAGGCGTGGGAGTACCATCGTTTCACCACTAG CCATGTGGGCACCGCGAGAGGAAACGCGACCTAAGCAACTCTATCAAGGA GAACAAGACGATGATGGAGGTGGATCACACCAAGAAGAGGGCGGGCAAAT GGCTGAGAGGACGAATACATACTCATTTAACGACTCTGTTGACGGTATCG ACAACCATAAGGAGGGAGACCGTAAAACGAGCGCGTCGAAGAGAAAGAAT TATCGAAAGAAGGCAGAAAAGGAGAAATCGGTGCTCGGAAAAGCCGGCGA TGCAATCAAGGCGGCGTTCAACGCCGTAATGGCGGCCGGTACGTTAGCGT CCCTCGTATTAGCGGCGGAGACCATTTGGGAGCTCCACGGGACGCCGCTG ACGTTCGCGAACGCGCTGCCGACGTTAACCAAGCTCCTTCCGCTCACCGG CATTGGGGTGTTGGGCGCGGCGCAGTTGGTCGGCGTGGTGGCGCGAGTCA CCAGGGTGATCGTGACGTTGCCTATTATGGTCAGCGGTACTTGGGTCATT CTGCAGAGCGTCCCACAGCTGTTGCCCAAGGGGTCGGATCTTTCGGGAGC AGGGTCCCTTGCTGCAATCTTGGCGACTCCCGAAGTATTGGAGACGGCTG CTGTCTTGGCTTTTCTATCAGGGATGGTATTATGGGCGGTCAACTTTACG CGTGGCGCTGTGACGGCGTTGAGTGCCGCGGCGTTTCCGACAAACGGAGA TGACAACGACGACGACTATGACTGACTGTTGCCCAAGGGGTCGGATCTTT CGGGAGCAGGGTCCCTTGCTGCAATCTTGGCGACTCCCGAAGTATTGGAG ACGGCTGCTGTCTTGGCTTTTCTATCAGGGATGGTATTATGGGCGGTCAA CTTTACGCGTGGCGCTGTGACGGCGTTGAGTGCCGCGGCGTTTCCGACAA ACGGAGATGACAACGACGACGACTATGACTGA back to top
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