mRNA_H-paniculata_contig14765.2845.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14765.2845.1
Unique NamemRNA_H-paniculata_contig14765.2845.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14765.2845.1 vs. uniprot
Match: D8LL59_ECTSI (Bromo domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL59_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 5.310e-51
Identity = 106/234 (45.30%), Postives = 140/234 (59.83%), Query Frame = 3 
Query:  210 EDRLSHVTICSICETFALEEDVVVLCRNCPRTFCCACAR----SSAIETETPPAVMRIGPSRCGGHLETNRCPSCLHRRDEHFSAPLPGAKPMEHLVEALLKHDLSHAFRAPVDSTEYPDYVYRIGRNHMMDLQTMVEKLREGKYSSRRGRGTFKQDLNKIWRNCRFYADCDEQGVPLDETTVPGIVRCALILEKMANRFYTTHMRD-QTGVVVPDTSWDGWRQARQLENEQAR 896
            EDR SH+  C+ C+    E D +  C  CPR+FC  C         +E E      R   +   G +   RCP C   +D  F+ P PG  PM+HL+  LL+HDLS  FR PVD  ++PDYV  IGRN MMDL TM+ KL+  +Y  RRG G F++DLN+IWRNCR +A CDE G P    TVPGIVRCAL LE M+++F +++M D Q      +++WD  RQ ++ EN +AR
Sbjct:  331 EDRSSHLMDCASCQHSLPEGDPIGRCERCPRSFCSQCLERGLVEQGVELEALGQDCRSLLNGKQGDISIARCPECFRGKDNEFAPPPPGGAPMDHLLSELLRHDLSLCFREPVDIVKHPDYVESIGRNAMMDLGTMLSKLQGKRYPRRRGPGQFQEDLNRIWRNCRRFAGCDELGRPHYGNTVPGIVRCALTLEAMSDKFISSYMSDNQETAAWQESTWDFHRQRQERENAEAR 564
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BLAST of mRNA_H-paniculata_contig14765.2845.1 vs. uniprot
Match: A0A2H3J790_WOLCO (Bromo domain-containing protein n=1 Tax=Wolfiporia cocos (strain MD-104) TaxID=742152 RepID=A0A2H3J790_WOLCO)

HSP 1 Score: 60.5 bits (145), Expect = 1.950e-5
Identity = 39/116 (33.62%), Postives = 58/116 (50.00%), Query Frame = 3 
Query:  513 SHAFRAPVDSTEYPDYVYRIGRNHMMDLQTMVEKLREGKYSSRRGRGTFKQDLNKIWRNCRFYADCD-----EQGVPLDETTVPGIVRCALILEKMANRFYT--THMRDQTGVVVP 839
            + AF  PV   E PDY   I   H MDLQTM++K+++ +Y S++    FK DL+ IW NC  Y   +      + +P D T    + +CA  L   A R     T  +++   V+P
Sbjct:    9 AEAFLKPVSRIEVPDYYDVIA--HPMDLQTMLKKVKQKQYKSKK---EFKDDLDLIWNNCYQYNAAEVHPPASRQIPADHTQNHPLRQCATRLRAKAERLLANITDYKERADPVIP 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14765.2845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL59_ECTSI5.310e-5145.30Bromo domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A2H3J790_WOLCO1.950e-533.62Bromo domain-containing protein n=1 Tax=Wolfiporia... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14765contigH-paniculata_contig14765:1688..5364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBromodomain protein
Ec32 orthologEc-25_000120.1
Exons2
Model size3430
Cds size1386
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14765.2845.1prot_H-paniculata_contig14765.2845.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14765 1798..3430 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929175.7092712-UTR-H-paniculata_contig14765:1687..17971622929175.7092712-UTR-H-paniculata_contig14765:1687..1797Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14765 1688..1797 +
1691480760.567759-UTR-H-paniculata_contig14765:1687..17971691480760.567759-UTR-H-paniculata_contig14765:1687..1797Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14765 1688..1797 +
1622929175.7518182-UTR-H-paniculata_contig14765:3430..53641622929175.7518182-UTR-H-paniculata_contig14765:3430..5364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14765 3431..5364 +
1691480760.5982366-UTR-H-paniculata_contig14765:3430..53641691480760.5982366-UTR-H-paniculata_contig14765:3430..5364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14765 3431..5364 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929175.7240772-CDS-H-paniculata_contig14765:1797..30911622929175.7240772-CDS-H-paniculata_contig14765:1797..3091Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14765 1798..3091 +
1691480760.5799582-CDS-H-paniculata_contig14765:1797..30911691480760.5799582-CDS-H-paniculata_contig14765:1797..3091Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14765 1798..3091 +
1622929175.7373612-CDS-H-paniculata_contig14765:3338..34301622929175.7373612-CDS-H-paniculata_contig14765:3338..3430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14765 3339..3430 +
1691480760.5880418-CDS-H-paniculata_contig14765:3338..34301691480760.5880418-CDS-H-paniculata_contig14765:3338..3430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14765 3339..3430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14765.2845.1

>prot_H-paniculata_contig14765.2845.1 ID=prot_H-paniculata_contig14765.2845.1|Name=mRNA_H-paniculata_contig14765.2845.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=462bp
MRQCGNITIALAGGIQSPILSASSVAPTEGSCTEDRLSHVTICSICETFA
LEEDVVVLCRNCPRTFCCACARSSAIETETPPAVMRIGPSRCGGHLETNR
CPSCLHRRDEHFSAPLPGAKPMEHLVEALLKHDLSHAFRAPVDSTEYPDY
VYRIGRNHMMDLQTMVEKLREGKYSSRRGRGTFKQDLNKIWRNCRFYADC
DEQGVPLDETTVPGIVRCALILEKMANRFYTTHMRDQTGVVVPDTSWDGW
RQARQLENEQARLQLSELQPRKMEANVDCVSAAAVPCLPLPALVDSEEDA
IPETGILGGEEKNAADKVYNLVLMRTTSRKRSHSEIRDGCSVQNDESSNN
GATVGIQAPEAAQRDDQTATDNRWGWRDGMTEPCYPPSPHDNMPDWSLFE
QLCRVSVEFSSISVLEQATKPPPLRIRASDRETLSRPWSRGTCSSETNTA
IMALRLASSRV*
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mRNA from alignment at H-paniculata_contig14765:1688..5364+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14765.2845.1 ID=mRNA_H-paniculata_contig14765.2845.1|Name=mRNA_H-paniculata_contig14765.2845.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3677bp|location=Sequence derived from alignment at H-paniculata_contig14765:1688..5364+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGACGGCGATCGGGTTTCCCTTGCGCTCAAGTGCGTACGAGAACTAGAC
AAGGTTGGTTTACGCAGCGAAGCAAATCGTGCGAAGAGTGAGCAAAGTCT
GCTGTGCCTGATGCGTCAATGTGGGAATATCACGATCGCGTTGGCCGGAG
GAATTCAATCCCCGATTTTGTCGGCATCTTCTGTTGCCCCGACGGAGGGT
AGCTGCACCGAGGATAGGCTCAGTCACGTCACAATATGCTCAATTTGTGA
AACATTTGCGCTGGAGGAAGATGTAGTTGTGCTCTGCAGGAATTGCCCAC
GGACTTTCTGCTGTGCCTGTGCGAGGAGTAGCGCTATCGAGACCGAAACA
CCTCCAGCGGTCATGCGGATTGGTCCAAGCAGGTGTGGGGGGCATCTTGA
GACCAACCGTTGCCCGTCGTGCTTACATCGTAGAGATGAACATTTCTCTG
CCCCACTCCCTGGTGCCAAACCCATGGAGCATCTCGTCGAAGCATTGCTC
AAGCATGACTTGTCGCACGCGTTTCGTGCGCCAGTAGATTCCACCGAGTA
TCCTGACTACGTCTACAGGATCGGGCGCAATCACATGATGGATCTCCAAA
CGATGGTGGAGAAGCTGAGAGAAGGCAAGTACTCTAGCCGGAGAGGGCGT
GGAACCTTCAAGCAAGACCTCAACAAAATCTGGCGCAACTGTAGGTTCTA
CGCAGATTGCGACGAGCAGGGCGTCCCTCTGGATGAAACAACTGTACCCG
GTATCGTTCGGTGTGCTCTCATCCTCGAAAAAATGGCGAACAGATTCTAC
ACAACACACATGCGGGATCAAACAGGCGTCGTAGTGCCTGATACCTCATG
GGACGGCTGGCGACAGGCAAGGCAACTGGAGAACGAACAGGCAAGGCTCC
AGTTATCCGAGCTCCAACCGAGAAAAATGGAGGCGAACGTTGATTGTGTA
TCTGCTGCTGCCGTGCCATGTTTGCCGCTGCCTGCTCTCGTAGACAGTGA
GGAAGATGCCATCCCCGAAACAGGGATATTGGGCGGCGAGGAGAAGAACG
CTGCGGACAAGGTATACAACCTGGTGCTGATGAGGACAACTTCGCGGAAA
CGGAGTCATTCAGAGATACGTGATGGATGCTCAGTGCAGAACGATGAATC
ATCAAACAATGGTGCTACAGTCGGTATTCAAGCACCGGAGGCGGCGCAGC
GTGATGATCAAACCGCAACAGATAATCGTTGGGGGTGGCGCGACGGGATG
ACAGAGCCATGCTATCCGCCTTCACCTCATGATAATATGCCGGATTGGAG
TCTCTTCGAGCAACTGTGTCGAGTGTCTGTCGAGTTTAGTAGCATAAGTG
TACTTGAACAAGCTACCAAGCCGCCGCCTCTTCGAATTCGGGCGTCAGAT
CGAGGTACAGCTCCGGAAACCACGTAGACTCTCGGTACTGTACTATCTTC
ATAATCAACATGACCGTGAGTTCCCAGTCTGGGCACCATACTCATCCCAA
GTAACAAGAATACATGAACCAGTTTGATCAACTGAGATGTTGTCATCTGA
TTCATGTGCAGAGCCCCACCGTCATTAAGAGGTTGGTTTTGGTGTAGTTG
CCTGACTCAGCCCATATCCGTGCTCTTTTGATATGACCACATCTACTTCA
GAGACTCTTTCAAGGCCGTGGTCTCGCGGCACTTGCTCCTCCGAGACAAA
CACTGCTATCATGGCTCTTCGCCTTGCTTCAAGCCGTGTTTAGCGCGACG
CCAAGACCCCCTGACGTTGATGCTTCTGGTAAAGTGGAATCGAGTCCGTC
GGAAGAAGGCTCGTTGGAGGACAAAGAAGAACCTTAACCTAAGGTTAGCT
CTTTAGCGGCTGCCCCTGGCCCCTTCTCAATCGCCGAGTTGTCTCGTCTC
ATTACCCGGGGATCGTGTAACTCCTTTAGAAGCGCGGCCACGCCGGCATC
GCCTCCGGTCCAAGTGCAGGAGCGTGAGGGTTGTAGAAAGCCCTGTCCAA
ACGTTTGAGACATGGTGTCAACTCTCGTTTTTTGCTTGGCGAGGGCAAAT
TTTCTGCGTTAGATGGACCTGGCCGTGTTTGTTGGAGGTGTAATTGGCGC
TGGTGGTGACGAGGAGTCTTTGCCTCGCCTCCTTTTCCTCGATAGTTGTC
CTCACGAGTTGTGTCACCATGTCCAGTTGCAATCGTCCCGTCGGCAGTGT
CGAGTGTCCTGTACTGAAGGCTACGCACCAGGCCAACTAAGGGGACAATA
TTCTTGTACGAATCCCGTCAGACACAATTCCAATTCCTACAGAGAATGAT
CTTTACACAGAGAAAGTACAAGGAAGTTTCCATGTATATAGGGATTAGTC
TCGGTGTACGGTGAGTAGTTCCTGGGCACAGTGATTGTTTTTTGTGGATT
GCTTTGGTTCCCTATACACAGCTCTAGACCAACGGAAGATGGTAAGTGTG
GCCGGGGTATCGCGTTGGGAGTGTGGAGGTAGGTATCGGGATGGCTTCGT
GTCTAGACGATTTGGAAGTTCAAGGCAGGTTCACACCGTTGCAACTCGAT
TCCTTCCATGCCTTGTGGAGCCTGTACTCGCACAAATCCCCTCGCGAGCC
GAGTTCTAAGGCAGATTTGGACTCCACGAAAACCTCGCCTCAGCTCAGCC
GAAAGGGGGGTTCACAATGACATCCGATAGGTACCGCTGACGTAAGTCCT
TACTGGCATGGCAACAAGGAGTGACCGCGGAAGGGTCAGGTAGAGGATTA
CTGATCCCCGTGGTGGGGGATACGGTATCGTGATAGCAATTGAGAAGAGT
TGAGTAGTGCGGAAATGAGAAATTCAGACACAAGTAAAACGCGTACGTCG
CGCAGTCGGCGTTACAGTTACGAATGGTCCCGTGCAATGATCACCTCGTT
ATACAGTAGTGGTGCAGCGTGACCCTCGAAAGAAAGTGTTGATTGGGAAT
AACACCAGTGTACCCCCACGGGCGGTATTTACGATGACACCCACGGTATA
GCATGTTGCCGTCTTATTTAATGTAGCGAGAGGTTGGAATAGGTGGGATG
AGAGATATATTAAGCAGACTACCACAGGTCGAGGAACCAGTAGCTGAGAG
TAGGGAGCCAGGATAGGCAGGCCGAGAGAATTGGTACAAAAGTAACTTAT
TGTTGCCTTCGATAGAGCGTTGTAGGGATAGATGCTATGGTACAACCTCC
AGGAGGGATGTTACGGCAGTGCTTTGGTGCACATAGTAACATAGTAACAC
CGTAGCAGAGGGAAAGGCTGATATCCTGATGATCCCAGAACCACAGACTC
ACACGTGACCAGAGGGTACCTTGTGAGTACCTTGTTGCAGATATTTCAAC
GTCCTTATGTTTCAGTGAGGTTGGCAAAGTGCTTAAAACGTAGTGGTAGG
CTGTATTTTACATTGTCAATCTCACCGCAACGTCATGATACGTTGTGCAA
ACACTGCCAACCTCACCACAGCGTGGACGTTGCACTATCCGCAACAAGGC
ATTCCTCTGGCCACGTGCATTAAACAGCCGACCCTCGTACTCGAGAATCA
GTTGTAATCGAGAATTAGCGTCAGCCGGTTTAAGTGTGCAAATTGTCGAA
TCAATATCTTTCTTTTTTTCCCACACTAAAACCGGCTGGCGCTCATTCTC
AATTATAAACTGATTCTCAAGTACGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig14765:1688..5364+

>mRNA_H-paniculata_contig14765.2845.1 ID=mRNA_H-paniculata_contig14765.2845.1|Name=mRNA_H-paniculata_contig14765.2845.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2772bp|location=Sequence derived from alignment at H-paniculata_contig14765:1688..5364+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTCAATGTGGGAATATCACGATCGCGTTGGCCGGAGGAATTCAATC
CCCGATTTTGTCGGCATCTTCTGTTGCCCCGACGGAGGGTAGCTGCACCG
AGGATAGGCTCAGTCACGTCACAATATGCTCAATTTGTGAAACATTTGCG
CTGGAGGAAGATGTAGTTGTGCTCTGCAGGAATTGCCCACGGACTTTCTG
CTGTGCCTGTGCGAGGAGTAGCGCTATCGAGACCGAAACACCTCCAGCGG
TCATGCGGATTGGTCCAAGCAGGTGTGGGGGGCATCTTGAGACCAACCGT
TGCCCGTCGTGCTTACATCGTAGAGATGAACATTTCTCTGCCCCACTCCC
TGGTGCCAAACCCATGGAGCATCTCGTCGAAGCATTGCTCAAGCATGACT
TGTCGCACGCGTTTCGTGCGCCAGTAGATTCCACCGAGTATCCTGACTAC
GTCTACAGGATCGGGCGCAATCACATGATGGATCTCCAAACGATGGTGGA
GAAGCTGAGAGAAGGCAAGTACTCTAGCCGGAGAGGGCGTGGAACCTTCA
AGCAAGACCTCAACAAAATCTGGCGCAACTGTAGGTTCTACGCAGATTGC
GACGAGCAGGGCGTCCCTCTGGATGAAACAACTGTACCCGGTATCGTTCG
GTGTGCTCTCATCCTCGAAAAAATGGCGAACAGATTCTACACAACACACA
TGCGGGATCAAACAGGCGTCGTAGTGCCTGATACCTCATGGGACGGCTGG
CGACAGGCAAGGCAACTGGAGAACGAACAGGCAAGGCTCCAGTTATCCGA
GCTCCAACCGAGAAAAATGGAGGCGAACGTTGATTGTGTATCTGCTGCTG
CCGTGCCATGTTTGCCGCTGCCTGCTCTCGTAGACAGTGAGGAAGATGCC
ATCCCCGAAACAGGGATATTGGGCGGCGAGGAGAAGAACGCTGCGGACAA
GGTATACAACCTGGTGCTGATGAGGACAACTTCGCGGAAACGGAGTCATT
CAGAGATACGTGATGGATGCTCAGTGCAGAACGATGAATCATCAAACAAT
GGTGCTACAGTCGGTATTCAAGCACCGGAGGCGGCGCAGCGTGATGATCA
AACCGCAACAGATAATCGTTGGGGGTGGCGCGACGGGATGACAGAGCCAT
GCTATCCGCCTTCACCTCATGATAATATGCCGGATTGGAGTCTCTTCGAG
CAACTGTGTCGAGTGTCTGTCGAGTTTAGTAGCATAAGTGTACTTGAACA
AGCTACCAAGCCGCCGCCTCTTCGAATTCGGGCGTCAGATCGAGATGCGT
CAATGTGGGAATATCACGATCGCGTTGGCCGGAGGAATTCAATCCCCGAT
TTTGTCGGCATCTTCTGTTGCCCCGACGGAGGGTAGCTGCACCGAGGATA
GGCTCAGTCACGTCACAATATGCTCAATTTGTGAAACATTTGCGCTGGAG
GAAGATGTAGTTGTGCTCTGCAGGAATTGCCCACGGACTTTCTGCTGTGC
CTGTGCGAGGAGTAGCGCTATCGAGACCGAAACACCTCCAGCGGTCATGC
GGATTGGTCCAAGCAGGTGTGGGGGGCATCTTGAGACCAACCGTTGCCCG
TCGTGCTTACATCGTAGAGATGAACATTTCTCTGCCCCACTCCCTGGTGC
CAAACCCATGGAGCATCTCGTCGAAGCATTGCTCAAGCATGACTTGTCGC
ACGCGTTTCGTGCGCCAGTAGATTCCACCGAGTATCCTGACTACGTCTAC
AGGATCGGGCGCAATCACATGATGGATCTCCAAACGATGGTGGAGAAGCT
GAGAGAAGGCAAGTACTCTAGCCGGAGAGGGCGTGGAACCTTCAAGCAAG
ACCTCAACAAAATCTGGCGCAACTGTAGGTTCTACGCAGATTGCGACGAG
CAGGGCGTCCCTCTGGATGAAACAACTGTACCCGGTATCGTTCGGTGTGC
TCTCATCCTCGAAAAAATGGCGAACAGATTCTACACAACACACATGCGGG
ATCAAACAGGCGTCGTAGTGCCTGATACCTCATGGGACGGCTGGCGACAG
GCAAGGCAACTGGAGAACGAACAGGCAAGGCTCCAGTTATCCGAGCTCCA
ACCGAGAAAAATGGAGGCGAACGTTGATTGTGTATCTGCTGCTGCCGTGC
CATGTTTGCCGCTGCCTGCTCTCGTAGACAGTGAGGAAGATGCCATCCCC
GAAACAGGGATATTGGGCGGCGAGGAGAAGAACGCTGCGGACAAGGTATA
CAACCTGGTGCTGATGAGGACAACTTCGCGGAAACGGAGTCATTCAGAGA
TACGTGATGGATGCTCAGTGCAGAACGATGAATCATCAAACAATGGTGCT
ACAGTCGGTATTCAAGCACCGGAGGCGGCGCAGCGTGATGATCAAACCGC
AACAGATAATCGTTGGGGGTGGCGCGACGGGATGACAGAGCCATGCTATC
CGCCTTCACCTCATGATAATATGCCGGATTGGAGTCTCTTCGAGCAACTG
TGTCGAGTGTCTGTCGAGTTTAGTAGCATAAGTGTACTTGAACAAGCTAC
CAAGCCGCCGCCTCTTCGAATTCGGGCGTCAGATCGAGAGACTCTTTCAA
GGCCGTGGTCTCGCGGCACTTGCTCCTCCGAGACAAACACTGCTATCATG
GCTCTTCGCCTTGCTTCAAGCCGTGTTTAGAGACTCTTTCAAGGCCGTGG
TCTCGCGGCACTTGCTCCTCCGAGACAAACACTGCTATCATGGCTCTTCG
CCTTGCTTCAAGCCGTGTTTAG
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