mRNA_H-paniculata_contig14725.2823.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14725.2823.1
Unique NamemRNA_H-paniculata_contig14725.2823.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14725.2823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14725contigH-paniculata_contig14725:1396..5103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size400
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14725.2823.1prot_H-paniculata_contig14725.2823.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14725 1396..5072 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929172.1350749-CDS-H-paniculata_contig14725:1395..15191622929172.1350749-CDS-H-paniculata_contig14725:1395..1519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14725 1396..1519 -
1691480759.4814734-CDS-H-paniculata_contig14725:1395..15191691480759.4814734-CDS-H-paniculata_contig14725:1395..1519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14725 1396..1519 -
1622929172.1487052-CDS-H-paniculata_contig14725:3533..37571622929172.1487052-CDS-H-paniculata_contig14725:3533..3757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14725 3534..3757 -
1691480759.4909072-CDS-H-paniculata_contig14725:3533..37571691480759.4909072-CDS-H-paniculata_contig14725:3533..3757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14725 3534..3757 -
1622929172.1620579-CDS-H-paniculata_contig14725:5051..50721622929172.1620579-CDS-H-paniculata_contig14725:5051..5072Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14725 5052..5072 -
1691480759.4995458-CDS-H-paniculata_contig14725:5051..50721691480759.4995458-CDS-H-paniculata_contig14725:5051..5072Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14725 5052..5072 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929172.1758342-UTR-H-paniculata_contig14725:5072..51031622929172.1758342-UTR-H-paniculata_contig14725:5072..5103Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14725 5073..5103 -
1691480759.5089152-UTR-H-paniculata_contig14725:5072..51031691480759.5089152-UTR-H-paniculata_contig14725:5072..5103Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14725 5073..5103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14725.2823.1

>prot_H-paniculata_contig14725.2823.1 ID=prot_H-paniculata_contig14725.2823.1|Name=mRNA_H-paniculata_contig14725.2823.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
MFIRQSQVDIEESRPIAVDKEDRQELDEGGDDDEDERVEDDQDEKEEEVE
NNNPPRRRGGARGAKKRAAPPTPKSGGKRGRGKKKAKTSPSGGKQTFSSA
ASKMKKAKEARRADDNSFRQVF*
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mRNA from alignment at H-paniculata_contig14725:1396..5103-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14725.2823.1 ID=mRNA_H-paniculata_contig14725.2823.1|Name=mRNA_H-paniculata_contig14725.2823.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3708bp|location=Sequence derived from alignment at H-paniculata_contig14725:1396..5103- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGCTCTTGAGCAAAGCGGAGCAGTATTCGATGTTCATTCGACAATCAC
AGGTATGAACGTATGGACGTGTTGTTGTATCCGCTGCACTTCACAGGGTG
CAGTGCTGGTTATAGAGCCACAGCTATTCCCTCGCAGAGTCAAACACGAT
CGATCGGGAAAGTGACCCCTAGGAGAAGTTACCCCCGGAGGGAAGTTACC
TCGAGGGGTTACCATGTAGAGAAGTTACCCCACGGGGGAGGTTATCCTAT
GAGGAGGGGAAACTCAGATTTTCCCCCTCCCCCCTCCCCACCCATAGAAG
TCCAAGGTGCGGGTAGTTCTTTTATAAGTATACCCCCCCCCCACCCACCC
ACCCCAATCAGGCGCCCCCTCACCTTCCCCTCCCACTCGATCGTTGAACG
GTTGCGTGGTCTTATTAATGAATAGCTCATTTTGGGCACATAATCACCAG
CGTCTCGATTAAGGCTGCTGATTCTCAGGTACAGGAGTAGAATATAGTAT
ATAATAGTTTAGTATTACATAGTTTATAATAAGCTGTGTATGTATATACT
GCCTCCTCCCCCATGATGAATTTTTCCGTCCTGGGTTTTCTCAAGAATCA
CGACCGAATGTCCGAAAAGCCTAATGTGTCTCTCTAATGACACATAGCGA
TATCTTACTAACGACAAAGAATGTTGCGGTCATCCGCGGAATATATCGAC
GTTGAAGGAGTCTTCACCTGGGGGGTGGGATGGTACATACATTGAATCGA
GAGTAAGAAAAATTATGGTGTGTACCAGGGACGTTCAGGCCATGTCTTGA
AAAAAAGACCCCAAGTCAGGAGCGAGAATAAACGTGCAAAGGTAAGTATG
CATTATATGTATGTGCTCAAATGATTAGATGAATACTGTTGATTGTTCTC
TCTCTGTGGCGCGCAACCTTCAACAACGAGGATCAATTTACAGCATTGTA
TGTACGGTCCATCCCGAAAGACAGGCAAGGATGCATTATCTTACGTACGG
TGAAGTACTCGTTTTTTTGTTTGTTTTTTTTTCCACGTGGATATGTCAAA
AGAATTACTGTGAAATAAAATGGAAAAAAAAGAAGAAAAGAAACGCATAT
TTTTAAAGAGGCGAAAATTATCACTATCCAGTTTCAATTTTAACAAAATA
AAATAAAATAAAATACAAGGTGCATATTAAAACCTTTGGTGATGGTGCGA
GTGTTTTGATTGGTAAGTCCGCCTACTGTACTTGTTTAAGTCCATCTATT
CATGTCGCCTCTCTCGTTTTGATGATTGCTTTTGCGTTCGTTCGTTCGTT
CGTTCGTTCGTTCGTTCGTTTGTTTGTTTGTTTGTTTGTTGTCAAGGTTG
ATATAGAAGAGAGTCGACCAATTGCTGTGGACAAGGAAGACCGACAGGAA
CTTGACGAAGGAGGTGACGATGATGAAGACGAAAGAGTGGAAGATGACCA
GGACGAGAAAGAGGAGGAGGTGGAGAATAACAATCCCCCAAGGAGGCGAG
GAGGCGCGCGCGGTGCGAAGAAGCGAGCGGCTCCTCCTACTCCGAAGAGC
GGAGGAAAGCGGGGTCGCGGGTAAGTGTTTAACGAAATCAACGTTTTTTT
TTTTGTTTTTTTTTTTAGCCTGGGTTTGCGAGAAAAAAAAAAAGGTCACT
CCTGTTTTTCTGTATTCCCCCCCCCCTCCCCCCTTTTTTTAAAATTCTGA
CGGTCATCGATCACTCTTCTTTTTTTTGTCGGAATGTTCGAAATTAAGTT
ACAGGTCATGTCTGTGTTTTTGGCGAAATTTGCGAGGTGGAAAATCGGAT
TTGTATGCATTTAATAAGCCGAAAAAGGTCGCCTTAAACTTTATCCGAAT
GCTATTATCCAGGGTTACCTTGTCATACACCGGTAGGAGTTTTGCGGGCA
TGTTCCAAGCCGAGGAAAAATGCCTTAACCCTTCGGCGACTGGACTTCGT
AATGGCCAAGGGAAAGATTTGCTGACGACCAGTCATGAATAATGACGAAT
ACGTCGACGTAATGCCTCAACCAGCTCTAGACAGTTTGTTGGTACATCTC
AGGTGCAAAAGGGGGTCCGTCTTTTTTGCCATCTTTGAGGGCTTTTATTT
TGAATTTAGTGTAGGTCGTGAACGGGCAAAAATCACTGTTTTTCGTAACG
GCCAAATGATGAGCAAGCAGCCCACAGCTACCTTAAGGACCAGAAGTTCC
TATAGCGAAGGTTTAAGAAATGAGTCTGACAAAAAAGTGAGCTCAGCGCT
GCAGTCGCGCTGTGCGCAAAATCATGTCGGTTTCCCCTCCTTGTTGGGTG
TACTGTTTTGTACTGGATTGGACACGACTGGCGGTCTGACGAGCGTTGAC
TCCCTGTTCTCGTGACTATTGTCATTAGATAGGCATTGATTTCTCTTGTT
TTTGACAGCAGGGCATGTGTAGGACCTCAGGGGGGGCAATAGCGACTAAA
TGGTTGAATTAAATGCATACGCAATTTTTTTGGGGGGGACGCTGTTCCTC
ATCGAATCGTGATCTAATCCCTCGTTGGGAGCAAAAAAAAAGACATCGGA
AAAAAGAGGTCGGGAGGGATGATTTCTGACACAGTGTCCCATGACCTGAT
AACAAGTGGGGAAATAGCTGCCGCTGTTCGGACACCCGTAAACAGTAAAG
ACAGCAACATATATGAGCTAGCGTGGTATGGTGCTTCGCGTCACAATTGC
AACACTCGACAGGAGCTTAGTTTGTGTGTCTGTGTGTGTGTATGTGTGTG
TGTGTGTGTTTGCCACATAAAACAGCCGCACACCCGGGCATGGAATCAAA
CAAACACAAACCACGTCCTTACCGGGGCATGAGCGTGACACTTCATGGAT
TGGGCCAATCGCAAATGGCTTGTCATCCACACGTCCAGTCAAAACCATGC
TGCCTCCCATACATGATCAGCCTCTACTTGTGAGGGAAAATCTAATCACC
AGCTAGATCACTAAGCTGACCGAAAAAAAAAATGCAGACATGAAATGTCA
CGCTCATGGCGCTTTAAGGACGTTTTTTGTCTTTTGTGTGAGCAAGTGAG
CACTGCCCACGACGGTGGATGGCGCGCGGTCAAATATCTTCTTTCTGTTG
GCGACAAAATGTTTTGGCCTCTAGTTACACGCATCCTCCTCTCAGTTCCT
TCATTTTTTTTTATTTTTTTTAAGAAAGTATATTATGAGGTGTTGATTGC
GGGGCGTGACAGTCATTGTCTAATGTGAAGGTTCCATCCCCAATCCCCGG
GTTTATGTAAGGTAGCCTCAGTTTGAGCTGGGAACAGGACGCACGGACGG
TGTGACCATCCCACCGCCTGACAGACTTGTATCGACCCAGGGCTTTTCCT
GTCGTACATCAATATACAGCTAATACAAGAGACCAGACCATTGCCAAGGA
CTACTTCTACCACCCCAGCCGTACCGCTCTGAGAGCATTGTGCAGCATAG
TCAGTAACAGGAAACAATAACCTACGTGTGTGAGATACTCCGCTAAACGC
ACAGCAGTCATTATCACAAGTATGCTGGTGTTTTGTTCGGTACTGTACTA
CACTATATGTGCTATATGGTTGTTGTTAACACAGGAAGAAGAAGGCGAAG
ACGTCACCGAGTGGGGGGAAGCAGACGTTCAGCTCCGCCGCGAGCAAGAT
GAAGAAGGCGAAAGAGGCTCGAAGGGCTGACGACAACTCGTTTCGACAGG
TGTTTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig14725:1396..5103-

>mRNA_H-paniculata_contig14725.2823.1 ID=mRNA_H-paniculata_contig14725.2823.1|Name=mRNA_H-paniculata_contig14725.2823.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig14725:1396..5103- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCATTCGACAATCACAGATGTTCATTCGACAATCACAGGTTGATAT
AGAAGAGAGTCGACCAATTGCTGTGGACAAGGAAGACCGACAGGAACTTG
ACGAAGGAGGTGACGATGATGAAGACGAAAGAGTGGAAGATGACCAGGAC
GAGAAAGAGGAGGAGGTGGAGAATAACAATCCCCCAAGGAGGCGAGGAGG
CGCGCGCGGTGCGAAGAAGCGAGCGGCTCCTCCTACTCCGAAGAGCGGAG
GAAAGCGGGGTCGCGGGTTGATATAGAAGAGAGTCGACCAATTGCTGTGG
ACAAGGAAGACCGACAGGAACTTGACGAAGGAGGTGACGATGATGAAGAC
GAAAGAGTGGAAGATGACCAGGACGAGAAAGAGGAGGAGGTGGAGAATAA
CAATCCCCCAAGGAGGCGAGGAGGCGCGCGCGGTGCGAAGAAGCGAGCGG
CTCCTCCTACTCCGAAGAGCGGAGGAAAGCGGGGTCGCGGGAAGAAGAAG
GCGAAGACGTCACCGAGTGGGGGGAAGCAGACGTTCAGCTCCGCCGCGAG
CAAGATGAAGAAGGCGAAAGAGGCTCGAAGGGCTGACGACAACTCGTTTC
GACAGGTGTTTTGAGAAGAAGAAGGCGAAGACGTCACCGAGTGGGGGGAA
GCAGACGTTCAGCTCCGCCGCGAGCAAGATGAAGAAGGCGAAAGAGGCTC
GAAGGGCTGACGACAACTCGTTTCGACAGGTGTTTTGA
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