mRNA_H-paniculata_contig14701.2812.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14701.2812.1
Unique NamemRNA_H-paniculata_contig14701.2812.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14701.2812.1 vs. uniprot
Match: D7G980_ECTSI (Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G980_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 9.120e-28
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 KVFPVEFVMRGYMTGSTSTSIWKNYEKGMRTYCGHDLPEGMVKNQVLPSGNLLTPTTK 174
            KVFP+EFVMRGY+TGSTSTSIWKNYEKG R YCGH LPEGM KNQ LP GN+LTPTTK
Sbjct:  136 KVFPIEFVMRGYLTGSTSTSIWKNYEKGTRAYCGHTLPEGMSKNQALPMGNILTPTTK 193
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BLAST of mRNA_H-paniculata_contig14701.2812.1 vs. uniprot
Match: A0A836C963_9STRA (Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C963_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.070e-26
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    4 VFPVEFVMRGYMTGSTSTSIWKNYEKGMRTYCGHDLPEGMVKNQVLPSGNLLTPTTK 174
            VFP+EFVMRGYMTGSTSTSIWKNYEKG+R YCGH LPEG+ KN  LP+GNLLTPTTK
Sbjct:  122 VFPIEFVMRGYMTGSTSTSIWKNYEKGVRQYCGHALPEGLRKNAKLPTGNLLTPTTK 178
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BLAST of mRNA_H-paniculata_contig14701.2812.1 vs. uniprot
Match: A0A1E7EVY2_9STRA (Phosphoribosylaminoimidazolesuccinocarboxamide synthase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EVY2_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.250e-24
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    7 FPVEFVMRGYMTGSTSTSIWKNYEKGMRTYCGHDLPEGMVKNQVLPSGNLLTPTTK 174
            FP+EFV+R YMTGST TSIWKNY +G+R YCGH LPEGMVKNQ LP GN+LTPTTK
Sbjct:   87 FPIEFVVRSYMTGSTDTSIWKNYTQGVRNYCGHALPEGMVKNQKLPMGNILTPTTK 142
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BLAST of mRNA_H-paniculata_contig14701.2812.1 vs. uniprot
Match: A0A7R9ZLU1_9STRA (Phosphoribosylaminoimidazolesuccinocarboxamide synthase (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZLU1_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 5.530e-23
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    7 FPVEFVMRGYMTGSTSTSIWKNYEKGMRTYCGHDLPEGMVKNQVLPSGNLLTPTTK 174
            FP+EFV+R YMTGSTSTSIWKNY+ G+R YCGH LPEGM KNQ L S N++TPTTK
Sbjct:   30 FPIEFVVRSYMTGSTSTSIWKNYQDGVRVYCGHTLPEGMKKNQKLAS-NIITPTTK 84
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BLAST of mRNA_H-paniculata_contig14701.2812.1 vs. uniprot
Match: A0A7S2VE47_9STRA (Phosphoribosylaminoimidazolesuccinocarboxamide synthase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VE47_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 5.890e-22
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 KVFPVEFVMRGYMTGSTSTSIWKNYEKGMRTYCGHDLPEGMVKNQVLPSGNLLTPTTK 174
            KVFP+EFV+R YMTGSTSTSIWKNY+ G+R YCGH LPEGM KNQ L   NLLTPTTK
Sbjct:  246 KVFPIEFVVRSYMTGSTSTSIWKNYQNGVRVYCGHPLPEGMKKNQKLEK-NLLTPTTK 302
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BLAST of mRNA_H-paniculata_contig14701.2812.1 vs. uniprot
Match: A0A1Z5K773_FISSO (Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K773_FISSO)

HSP 1 Score: 95.1 bits (235), Expect = 2.130e-21
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    1 KVFPVEFVMRGYMTGSTSTSIWKNYEKGMRTYCGHDLPEGMVKNQVLPSGNLLTPTTK 174
            K FP+EFV+R YMTGSTSTSIW NY+ G+R YCGH+L +GMVKNQ LP+ NLLTPTTK
Sbjct:  233 KPFPIEFVVRSYMTGSTSTSIWSNYQNGVRNYCGHELADGMVKNQKLPT-NLLTPTTK 289
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BLAST of mRNA_H-paniculata_contig14701.2812.1 vs. uniprot
Match: A0A2E4DWE3_9BACT (Phosphoribosylaminoimidazolesuccinocarboxamide synthase (Fragment) n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E4DWE3_9BACT)

HSP 1 Score: 92.0 bits (227), Expect = 3.370e-21
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    4 VFPVEFVMRGYMTGSTSTSIWKNYEKGMRTYCGHDLPEGMVKNQVLPSGNLLTPTTK 174
            VFP+EFV+RGY+TGSTSTS+W  Y  G RTYCG+DLPEG+VKNQ L  GN+LTPTTK
Sbjct:  107 VFPIEFVVRGYITGSTSTSLWTVYNNGNRTYCGNDLPEGLVKNQKL-DGNMLTPTTK 162
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BLAST of mRNA_H-paniculata_contig14701.2812.1 vs. uniprot
Match: UPI00192A119D (phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic isoform X1 n=2 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI00192A119D)

HSP 1 Score: 94.0 bits (232), Expect = 3.540e-21
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    4 VFPVEFVMRGYMTGSTSTSIWKNYEKGMRTYCGHDLPEGMVKNQVLPSGNLLTPTTK 174
            VFPVEFV+RG++TGST TS+W  Y KGMR YCG+DLP+GMVKNQ LP GN++TPTTK
Sbjct:  164 VFPVEFVVRGFVTGSTDTSLWTVYNKGMRNYCGNDLPDGMVKNQKLP-GNIITPTTK 219
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BLAST of mRNA_H-paniculata_contig14701.2812.1 vs. uniprot
Match: A0A7S4C832_9EUGL (Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C832_9EUGL)

HSP 1 Score: 94.0 bits (232), Expect = 4.350e-21
Identity = 45/58 (77.59%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 KVFPVEFVMRGYMTGSTSTSIWKNYEKGMRTYCGHDLPEGMVKNQVLPSGNLLTPTTK 174
            K FP+EFV+R YMTGSTSTSIWKNY  G+R YCGH LPEGMVKNQ L   NLLTPTTK
Sbjct:  198 KPFPIEFVVRSYMTGSTSTSIWKNYCNGVRNYCGHALPEGMVKNQKLEK-NLLTPTTK 254
[Close]
BLAST of mRNA_H-paniculata_contig14701.2812.1 vs. uniprot
Match: A0A4D9CWR3_9STRA (Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWR3_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 4.800e-21
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    4 VFPVEFVMRGYMTGSTSTSIWKNYEKGMRTYCGHDLPEGMVKNQVLPSGNLLTPTTK 174
            VFPVEFVMRGY+TGST TS+W NY+KG+R YCGH LPEG+ KNQ L + NLLTPTTK
Sbjct:  126 VFPVEFVMRGYITGSTDTSLWTNYKKGVRQYCGHALPEGLKKNQQL-ANNLLTPTTK 181
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14701.2812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G980_ECTSI9.120e-2884.48Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
A0A836C963_9STRA2.070e-2684.21Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
A0A1E7EVY2_9STRA1.250e-2478.57Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
A0A7R9ZLU1_9STRA5.530e-2375.00Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
A0A7S2VE47_9STRA5.890e-2277.59Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
A0A1Z5K773_FISSO2.130e-2174.14Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
A0A2E4DWE3_9BACT3.370e-2173.68Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
UPI00192A119D3.540e-2173.68phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
A0A7S4C832_9EUGL4.350e-2177.59Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
A0A4D9CWR3_9STRA4.800e-2175.44Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14701contigH-paniculata_contig14701:310..510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue6.7e-18
Seed eggNOG ortholog2880.D7G980
KEGG rclassRC00064,RC00162
KEGG koko:K01923
KEGG ReactionR04591
KEGG Pathwayko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130
KEGG ModuleM00048
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009719,GO:0009725,GO:0009733,GO:0009987,GO:0010033,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0050896,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.phosphoribosylaminoimidazole carboxylase activity
EggNOG OGsCOG0152@1,KOG2835@2759
EC6.3.2.6
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size201
Cds size177
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929170.8900566-UTR-H-paniculata_contig14701:309..3331622929170.8900566-UTR-H-paniculata_contig14701:309..333Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14701 310..333 +
1691480759.0121133-UTR-H-paniculata_contig14701:309..3331691480759.0121133-UTR-H-paniculata_contig14701:309..333Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14701 310..333 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929170.8999739-CDS-H-paniculata_contig14701:333..5101622929170.8999739-CDS-H-paniculata_contig14701:333..510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14701 334..510 +
1691480759.0272577-CDS-H-paniculata_contig14701:333..5101691480759.0272577-CDS-H-paniculata_contig14701:333..510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14701 334..510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14701.2812.1prot_H-paniculata_contig14701.2812.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14701 334..510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14701.2812.1

>prot_H-paniculata_contig14701.2812.1 ID=prot_H-paniculata_contig14701.2812.1|Name=mRNA_H-paniculata_contig14701.2812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
MRGYMTGSTSTSIWKNYEKGMRTYCGHDLPEGMVKNQVLPSGNLLTPTTK
VRMRLRRG*
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mRNA from alignment at H-paniculata_contig14701:310..510+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14701.2812.1 ID=mRNA_H-paniculata_contig14701.2812.1|Name=mRNA_H-paniculata_contig14701.2812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig14701:310..510+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTGTTCCCGGTGGAGTTCGTGATGCGGGGGTACATGACGGGGTCGAC
ATCGACGTCCATCTGGAAAAATTACGAGAAGGGCATGCGCACGTACTGCG
GGCATGACCTGCCGGAGGGCATGGTTAAAAATCAGGTCCTTCCTTCGGGA
AACCTCCTCACGCCAACCACGAAGGTGCGGATGAGACTCAGAAGAGGATA
G
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Coding sequence (CDS) from alignment at H-paniculata_contig14701:310..510+

>mRNA_H-paniculata_contig14701.2812.1 ID=mRNA_H-paniculata_contig14701.2812.1|Name=mRNA_H-paniculata_contig14701.2812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig14701:310..510+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGGGGTACATGACGGGGTCGACATCGACGTCCATCTGGAAAAATTA
CGAGAAGGGCATGCGCACGTACTGCGGGCATGACCTGCCGGAGGGCATGG
TTAAAAATCAGGTCCTTCCTTCGGGAAACCTCCTCACGCCAACCACGAAG
GTGCGGATGAGACTCAGAAGAGGATAGATGCGGGGGTACATGACGGGGTC
GACATCGACGTCCATCTGGAAAAATTACGAGAAGGGCATGCGCACGTACT
GCGGGCATGACCTGCCGGAGGGCATGGTTAAAAATCAGGTCCTTCCTTCG
GGAAACCTCCTCACGCCAACCACGAAGGTGCGGATGAGACTCAGAAGAGG
ATAG
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