prot_H-paniculata_contig14691.2799.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig14691.2799.1
Unique Nameprot_H-paniculata_contig14691.2799.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length233
Homology
BLAST of mRNA_H-paniculata_contig14691.2799.1 vs. uniprot
Match: A0A1J3ECY8_NOCCA (Copia protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3ECY8_NOCCA)

HSP 1 Score: 130 bits (328), Expect = 3.110e-31
Identity = 76/222 (34.23%), Postives = 120/222 (54.05%), Query Frame = 0
Query:   13 REAKESQEWENWKMAEEKEMRGMVDNGVWETIDRPKDNLAVGTKMLYKHKISKNGKVEIYKCRLVALGILQIEGIHYTKKYSSTPATVFIRMFSATAVAKDGELRHFDADQAFLKAEIDKEVYIEIPERF-QYFPEAAGKLSKAIYGLVQGGRCWNIKFCD-VTAIGFQQSRADLCMFRKVVDGEVEIVVVLRVDDILSRAKDRAMMEWFATQLGGRFKLED 232
            R  KE+   + W+ A   E++ + DN  WE  D P    A+G K ++K K   +G +E +K RLVALG  Q EGI Y + ++       +R F + A A++ EL   D   AFL   +D+E+Y+  P+ F    P    KL +++YGL Q  RCW       + A GF+QS +D  +F  +V G++E+ V++ VDD++    D   + +F T L  +F ++D
Sbjct:  214 RSFKEAMNLDVWRDAMGNEVKALEDNDTWELTDLPPGKKAIGCKWVFKIKFHSDGTIERFKARLVALGNRQEEGIDYDETFAPVVKMTTVRTFLSIASARNWELHQMDVHNAFLHGTLDEEIYMRPPQGFFNSTPNKVCKLKRSLYGLKQAPRCWFATLHKALLAYGFRQSASDHSLF-SLVKGQIELYVLVYVDDLVIGGNDSDTISFFKTYLNSQFHMKD 434          
BLAST of mRNA_H-paniculata_contig14691.2799.1 vs. uniprot
Match: A0A075AZK3_ROZAC (Reverse transcriptase, RNA-dependent DNA polymerase domain-containing protein (Fragment) n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075AZK3_ROZAC)

HSP 1 Score: 122 bits (306), Expect = 9.410e-31
Identity = 73/220 (33.18%), Postives = 123/220 (55.91%), Query Frame = 0
Query:   18 SQEWENWKMAEEKEMRGMVDNGVWETIDRPKDNLAVGTKMLYKHKISKNGKVEIYKCRLVALGILQIEGIHYTKKYSSTPATVFIRMFSATAVAKDGELRHFDADQAFLKAEIDKEVYIEIPERFQYFPEAAG----KLSKAIYGLVQGGRCWNIKFC-DVTAIGFQQSRADLCMFRKVVDGEVEIVVVLRVDDILSRAKDRAMMEWFATQLGGRFKLED 232
            S E + W+ A + E++ +V N V+E ++ P+    +G+  + + K +  G ++ YK RL ALG  Q+EGI + K YS       IR+  A AV  + ++   D D A+L ++IDKE+Y+  PE F+   E  G    KL KA+YGL Q GR WN+    D+   GF + +AD C++ K  +  + ++V L VDDI+  +++  +++     L   + ++D
Sbjct:    4 SVEKKKWEKAIDNELQSLVKNDVFEIVNLPEGRKTIGSVWVLRVKFNVAGNIDKYKARLCALGNTQVEGIDFEKTYSPVCRIQSIRILMAIAVEFNMKIHQMDVDTAYLNSKIDKEIYMRFPEGFKM--EHGGGKVWKLKKALYGLKQAGRQWNLHIDQDLRKAGFNKCKADWCIYFKKENKRI-VIVALYVDDIIIMSEEDELLQQTKDMLNHCYSMKD 220          
BLAST of mRNA_H-paniculata_contig14691.2799.1 vs. uniprot
Match: A0A438DDA6_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DDA6_VITVI)

HSP 1 Score: 126 bits (316), Expect = 1.190e-30
Identity = 78/221 (35.29%), Postives = 120/221 (54.30%), Query Frame = 0
Query:   16 KESQEWENWKMAEEKEMRGMVDNGVWETIDRPKDNLAVGTKMLYKHKISKNGKVEIYKCRLVALGILQIEGIHYTKKYSSTPATVFIRMFSATAVAKDGELRHFDADQAFLKAEIDKEVYIEIPERFQYF-PEAAGKLSKAIYGLVQGGRCWNIKFCDVTAI---GFQQSRADLCMFRKVVDGEVEIVVVLRVDDILSRAKDRAMMEWFATQLGGRFKLED 232
            KE+ +   W+ +  +E+R + +NG W     PK   A+G++ +Y+ K   NG +E  K RLV LG  Q  GI Y + +S       +R F A A +K+ EL   D   AFL  ++++EVY+++P  F+   P    +L K++YGL Q  RCW  K   VTA+   GF QS +D  +F     G V+I V++ VDD++    D A ++ F   L   FK++D
Sbjct:  130 KEAMKDVGWQKSMHEEIRALEENGTWTLEPLPKGKRALGSQWVYRTKYFSNGDIERLKSRLVVLGNHQEAGIDYHETFSPVAKMTTVRAFLAIAASKNWELHQMDVHNAFLHGDLEEEVYMKLPPGFESSDPNLVCRLRKSLYGLKQAPRCWFAKL--VTALKGYGFLQSYSDYSLFTY-TKGNVQINVLVYVDDLIISGNDSAALKTFKAYLSDCFKMKD 347          
BLAST of mRNA_H-paniculata_contig14691.2799.1 vs. uniprot
Match: A0A392PD17_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Trifolium TaxID=3898 RepID=A0A392PD17_9FABA)

HSP 1 Score: 123 bits (308), Expect = 1.360e-30
Identity = 73/197 (37.06%), Postives = 107/197 (54.31%), Query Frame = 0
Query:   38 NGVWETIDRPKDNLAVGTKMLYKHKISKNGKVEIYKCRLVALGILQIEGIHYTKKYSSTPATVFIRMFSATAVAKDGELRHFDADQAFLKAEIDKEVYIEIPERFQYF-PEAAGKLSKAIYGLVQGGRCWNIKFCD-VTAIGFQQSRADLCMFRKVVDGEVEIVVVLRVDDILSRAKDRAMMEWFATQLGGRFKLED 232
            NG W     PK    +G K +YK K + +G +E YK RLV  G  Q+EGI Y + ++     V +R+  A A AK  E+   D   AFL  ++ +EVY++ P  F+ F P    KL K++YGL Q  RCW  K    +   GF+QS +D  +F  +V  EV+IVV++ VDD++    D A ++ F   L   F ++D
Sbjct:    1 NGTWTLQPLPKGKKPLGCKWVYKIKHNSDGTIERYKARLVIFGNHQVEGIDYNETFAPVAKMVTVRLVLAVAAAKKWEIHQMDVHNAFLHGDLHEEVYMKPPPGFRTFQPGLVCKLKKSLYGLKQAPRCWFAKLSSALKKFGFRQSCSDYSLFTLLVH-EVQIVVLVYVDDLIVCGNDSAAIQRFKAYLSKCFHMKD 196          
BLAST of mRNA_H-paniculata_contig14691.2799.1 vs. uniprot
Match: A0A2K3MNN8_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MNN8_TRIPR)

HSP 1 Score: 128 bits (322), Expect = 2.500e-30
Identity = 75/211 (35.55%), Postives = 115/211 (54.50%), Query Frame = 0
Query:   24 WKMAEEKEMRGMVDNGVWETIDRPKDNLAVGTKMLYKHKISKNGKVEIYKCRLVALGILQIEGIHYTKKYSSTPATVFIRMFSATAVAKDGELRHFDADQAFLKAEIDKEVYIEIPERFQYFPEA-AGKLSKAIYGLVQGGRCWNIKF-CDVTAIGFQQSRADLCMFRKVVDGEVEIVVVLRVDDILSRAKDRAMMEWFATQLGGRFKLED 232
            W+ A +KEM+ + DN  W     P    A+G + +YK K + +G VE YK RLV LG  QIEGI Y + ++     V +R F A A  ++ EL   D   AFL  ++++EVY+ +P  F         +L K++YGL Q  RCW  K    +   GF+QS +D  +F  ++ G+V+I V++ VDD++    D A ++ F   L   F ++D
Sbjct:  995 WRDAMKKEMQALEDNETWTLEPLPPGKRAIGCRWVYKIKYNADGTVERYKARLVILGNKQIEGIDYNETFAPVAKMVTVRTFLAVAATRNWELHQMDVHNAFLHGDLEEEVYMHMPPGFGTRKSGMVCRLKKSLYGLKQAPRCWFAKLVAALRTYGFKQSYSDYSLFT-LLRGDVQIHVLVYVDDLIVSGNDHAAIQLFKAYLSDCFHMKD 1204          
BLAST of mRNA_H-paniculata_contig14691.2799.1 vs. uniprot
Match: A0A438HFT6_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HFT6_VITVI)

HSP 1 Score: 128 bits (321), Expect = 3.230e-30
Identity = 77/219 (35.16%), Postives = 117/219 (53.42%), Query Frame = 0
Query:   16 KESQEWENWKMAEEKEMRGMVDNGVWETIDRPKDNLAVGTKMLYKHKISKNGKVEIYKCRLVALGILQIEGIHYTKKYSSTPATVFIRMFSATAVAKDGELRHFDADQAFLKAEIDKEVYIEIPERFQYF-PEAAGKLSKAIYGLVQGGRCWNIKFCD-VTAIGFQQSRADLCMFRKVVDGEVEIVVVLRVDDILSRAKDRAMMEWFATQLGGRFKLED 232
            KE+ +   W+ +  KE+R + +NG W     PK   A+G++ +YK K   NG +E  K RLV LG  Q  GI Y + +S       +R F A A +K+ EL   D   AFL  ++++EVY+++P  F+   P    +L K++YGL Q  RCW  K    +   GF QS +D  +F     G V+I V++ VDD++    D A ++ F   L   FK++D
Sbjct:  559 KEAMKDVGWQKSMHKEIRALEENGTWTLEPLPKGKRALGSQWVYKTKYFSNGDIERLKSRLVVLGNHQEAGIDYHETFSPVAKMTTVRAFLAIAASKNWELHQMDVHNAFLHGDLEEEVYMKLPPGFERSDPNLVCRLRKSLYGLKQAPRCWFAKLVTTLKGYGFLQSYSDYSLFTY-TKGNVQINVLVYVDDLIISGNDSAALKTFKAYLSDCFKMKD 776          
BLAST of mRNA_H-paniculata_contig14691.2799.1 vs. uniprot
Match: A0A438HTH6_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HTH6_VITVI)

HSP 1 Score: 127 bits (320), Expect = 4.200e-30
Identity = 79/221 (35.75%), Postives = 121/221 (54.75%), Query Frame = 0
Query:   16 KESQEWENWKMAEEKEMRGMVDNGVWETIDRPKDNLAVGTKMLYKHKISKNGKVEIYKCRLVALGILQIEGIHYTKKYSSTPATVFIRMFSATAVAKDGELRHFDADQAFLKAEIDKEVYIEIPERFQYF-PEAAGKLSKAIYGLVQGGRCWNIKFCDVTAI---GFQQSRADLCMFRKVVDGEVEIVVVLRVDDILSRAKDRAMMEWFATQLGGRFKLED 232
            KE+ +   W+ +  +E+R + +NG W     PK   A+G++ +Y+ K   NG +E  K RLV LG  Q  GI Y + +SS      +R F A A +K+ EL   D   AFL  ++++EVY+++P  F+   P    +L K++YGL Q  RCW  K   VTA+   GF QS +D  +F     G V+I V++ VDD++    D A ++ F   L   FK++D
Sbjct:  366 KEAMKDVGWQKSMHEEIRALEENGTWTLEPLPKGKRALGSQWVYRTKYFSNGDIERLKSRLVVLGNHQEVGIDYHETFSSVAKMTTVRAFLAIAASKNWELHQMDVHNAFLHGDLEEEVYMKLPPGFERSDPNLVCRLRKSLYGLKQAPRCWFAKL--VTALKGYGFLQSYSDYSLFTY-TKGNVQINVLVYVDDLIISGNDSATLKTFKAYLSDCFKMKD 583          
BLAST of mRNA_H-paniculata_contig14691.2799.1 vs. uniprot
Match: A0A438HSQ8_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HSQ8_VITVI)

HSP 1 Score: 126 bits (316), Expect = 8.060e-30
Identity = 78/221 (35.29%), Postives = 120/221 (54.30%), Query Frame = 0
Query:   16 KESQEWENWKMAEEKEMRGMVDNGVWETIDRPKDNLAVGTKMLYKHKISKNGKVEIYKCRLVALGILQIEGIHYTKKYSSTPATVFIRMFSATAVAKDGELRHFDADQAFLKAEIDKEVYIEIPERFQYF-PEAAGKLSKAIYGLVQGGRCWNIKFCDVTAI---GFQQSRADLCMFRKVVDGEVEIVVVLRVDDILSRAKDRAMMEWFATQLGGRFKLED 232
            KE+ +   W+ +  +E+R + +NG W     PK   A+G++ +Y+ K   NG +E  K RLV LG  Q  GI Y + +S       +R F A A +K+ EL   D   AFL  ++++EVY+++P  F+   P    +L K++YGL Q  RCW  K   VTA+   GF QS +D  +F     G V+I V++ VDD++    D A ++ F   L   FK++D
Sbjct:  306 KEAMKDVGWQKSMHEEIRALEENGTWTLEPLPKGKRALGSQWVYRTKYFSNGDIERLKSRLVVLGNHQEAGIDYHETFSPVAKMTTVRAFLAIAASKNWELHQMDVHNAFLHGDLEEEVYMKLPPGFERSDPNLVCRLRKSLYGLKQAPRCWFAKL--VTALKGYGFLQSYSDYSLFTY-TKGNVQINVLVYVDDLIISGNDSAALKTFKAYLSDCFKMKD 523          
BLAST of mRNA_H-paniculata_contig14691.2799.1 vs. uniprot
Match: A0A177TKF2_9BASI (Uncharacterized protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TKF2_9BASI)

HSP 1 Score: 127 bits (318), Expect = 8.470e-30
Identity = 80/230 (34.78%), Postives = 121/230 (52.61%), Query Frame = 0
Query:    4 DLRLKPRHRREAKESQEWENWKMAEEKEMRGMVDNGVWETIDRPKDNLAVGTKMLYKHKISKNGKVEIYKCRLVALGILQIEGIHYTKKYSSTPATVFIRMFSATAVAKDGELRHFDADQAFLKAEIDKEVYIEIPERFQYFPEAAGKLSKAIYGLVQGGRCWNIKFCD-VTAIGFQQSRADLCMFRKVVDGEVEIVVVLRVDDILSRAKDRAMMEWFATQLGGRFKLED 232
            D R  P+  REA E ++W  WK A E E+  + + G ++ +D P+D   +  K +   K + +G +  YK R VA G  QIEGI + + ++ T     +RM  A A   D EL  +D   A+L  E+   VYI+ PE          KL KA+YGL Q GR WNI   + +T +GF+QS+ D  +F +     V  ++V+ VDD++  A     ++   +QL  RFK +D
Sbjct:  865 DRRENPKSIREAMERKDWAKWKEAIEIELGALKETGTYQVVDTPRDANILTGKWVLTIKYNADGTISKYKARWVARGYSQIEGIDFDETHAPTARMASVRMVGALAAVDDLELIQWDYTTAYLNGELHNAVYIQPPEGVDVPAGKTWKLVKALYGLRQAGREWNIVLVEQLTDMGFRQSKTDASLFVRTEPSFV--IIVVYVDDLIIAASKDTDLKKLKSQLAARFKGKD 1092          
BLAST of mRNA_H-paniculata_contig14691.2799.1 vs. uniprot
Match: A0A438CTP0_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CTP0_VITVI)

HSP 1 Score: 124 bits (310), Expect = 8.850e-30
Identity = 77/221 (34.84%), Postives = 120/221 (54.30%), Query Frame = 0
Query:   16 KESQEWENWKMAEEKEMRGMVDNGVWETIDRPKDNLAVGTKMLYKHKISKNGKVEIYKCRLVALGILQIEGIHYTKKYSSTPATVFIRMFSATAVAKDGELRHFDADQAFLKAEIDKEVYIEIPERFQYF-PEAAGKLSKAIYGLVQGGRCWNIKFCDVTAI---GFQQSRADLCMFRKVVDGEVEIVVVLRVDDILSRAKDRAMMEWFATQLGGRFKLED 232
            KE+ +   W+ +  +E+R + +NG W     PK   A+G++ +Y+ K   NG +E  K RLV LG  Q  GI Y + +S       +R F A A +K+ EL   D   AFL  ++++EVY+++P  F+   P    +L K++YGL Q  RCW  K   VTA+   GF QS ++  +F     G V+I V++ VDD++    D A ++ F   L   FK++D
Sbjct:  114 KEAMKDVGWQKSMHEEIRALEENGTWTLEPLPKGKRALGSQWVYRTKYFSNGDIERLKSRLVVLGNHQEAGIDYHETFSPVAKMTTVRAFLAIAASKNWELHQMDVHNAFLHGDLEEEVYMKLPPGFESSDPNLVCRLRKSLYGLKQAPRCWFAKL--VTALKGYGFLQSYSNYSLFTY-TKGNVQINVLVYVDDLIISRNDSAALKTFKAYLNDCFKMKD 331          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14691.2799.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1J3ECY8_NOCCA3.110e-3134.23Copia protein (Fragment) n=1 Tax=Noccaea caerulesc... [more]
A0A075AZK3_ROZAC9.410e-3133.18Reverse transcriptase, RNA-dependent DNA polymeras... [more]
A0A438DDA6_VITVI1.190e-3035.29Retrovirus-related Pol polyprotein from transposon... [more]
A0A392PD17_9FABA1.360e-3037.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2K3MNN8_TRIPR2.500e-3035.55Retrovirus-related Pol polyprotein from transposon... [more]
A0A438HFT6_VITVI3.230e-3035.16Retrovirus-related Pol polyprotein from transposon... [more]
A0A438HTH6_VITVI4.200e-3035.75Retrovirus-related Pol polyprotein from transposon... [more]
A0A438HSQ8_VITVI8.060e-3035.29Retrovirus-related Pol polyprotein from transposon... [more]
A0A177TKF2_9BASI8.470e-3034.78Uncharacterized protein n=1 Tax=Tilletia indica Ta... [more]
A0A438CTP0_VITVI8.850e-3034.84Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 40..232
e-value: 8.0E-36
score: 123.9
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 18..188
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 18..188

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14691contigH-paniculata_contig14691:5795..6493 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14691.2799.1mRNA_H-paniculata_contig14691.2799.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig14691 5795..6493 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig14691.2799.1 ID=prot_H-paniculata_contig14691.2799.1|Name=mRNA_H-paniculata_contig14691.2799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=233bp
MANDLRLKPRHRREAKESQEWENWKMAEEKEMRGMVDNGVWETIDRPKDN
LAVGTKMLYKHKISKNGKVEIYKCRLVALGILQIEGIHYTKKYSSTPATV
FIRMFSATAVAKDGELRHFDADQAFLKAEIDKEVYIEIPERFQYFPEAAG
KLSKAIYGLVQGGRCWNIKFCDVTAIGFQQSRADLCMFRKVVDGEVEIVV
VLRVDDILSRAKDRAMMEWFATQLGGRFKLED*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like