prot_H-paniculata_contig14570.2739.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig14570.2739.1
Unique Nameprot_H-paniculata_contig14570.2739.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length846
Homology
BLAST of mRNA_H-paniculata_contig14570.2739.1 vs. uniprot
Match: D7FGZ2_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGZ2_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 3.640e-15
Identity = 56/116 (48.28%), Postives = 71/116 (61.21%), Query Frame = 0
Query:    1 MLEQACAHAFCFICVMTWAERTNTCPMCKARFNAV-HRAPQKTARGL--GETVEVEDRDPTADNNSGDEDLAAELAEQEGSINGESDLDDDDDDPNLLATQHELHGYVLNDFVVDD 113
            +L  ACAHA+CF C+  W+ERTNTCP+CK RFNA+ H    K+   L  GE VEV++RD  A N S DEDLAA LA QE    G S  + DD +   +      HGY+ + F+V D
Sbjct:   78 VLAPACAHAYCFACISIWSERTNTCPLCKERFNAIRHGGGSKSGIRLAAGEIVEVQERDQAA-NCSSDEDLAAALAAQES---GTSSGEQDDGEAGRVGP----HGYISDGFLVAD 185          
BLAST of mRNA_H-paniculata_contig14570.2739.1 vs. uniprot
Match: A0A6H5KDT9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDT9_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.030e-14
Identity = 52/116 (44.83%), Postives = 68/116 (58.62%), Query Frame = 0
Query:    1 MLEQACAHAFCFICVMTWAERTNTCPMCKARFNAVHRAPQKTAR---GLGETVEVEDRDPTADNNSGDEDLAAELAEQEGSINGESDLDDDDDDPNLLATQHELHGYVLNDFVVDD 113
            +L  ACAHA+CF C+  W+ERTNTCP+CK RFNA+       +      GE VEV++RD  AD +S DEDLAA LA Q+    G S  + DD     +      HGY+ + F+V D
Sbjct:   79 VLAPACAHAYCFACISIWSERTNTCPLCKERFNAIRNGGGSKSGIRLAAGEIVEVQERDQAADCSS-DEDLAAALATQDS---GTSSSEQDDGAAGRVGP----HGYISDGFLVAD 186          
BLAST of mRNA_H-paniculata_contig14570.2739.1 vs. uniprot
Match: UPI001CF23A80 (uncharacterized protein LOC114959687 n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF23A80)

HSP 1 Score: 60.8 bits (146), Expect = 8.570e-6
Identity = 38/90 (42.22%), Postives = 49/90 (54.44%), Query Frame = 0
Query:    6 CAHAFCFICVMTWAERTNTCPMCKARFNAVHRAPQKTARGLGETVEVEDRDPTADNNSGDEDLAAELAEQEGSINGESDLDDDDDDPNLL 95
            C+H FCF C++ WAE TNTCP+CKARF  + +      R     V V D+D    N+  DEDL   +AE         DLDDD + P+ L
Sbjct:   43 CSHWFCFPCILEWAENTNTCPICKARFRCITKIHVSPFRSPPIKVRVGDKDQRVWND--DEDL---VAEDVLDAIDPDDLDDDYEPPHHL 127          
BLAST of mRNA_H-paniculata_contig14570.2739.1 vs. uniprot
Match: A0A7S0KY80_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KY80_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 8.990e-6
Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 0
Query:    6 CAHAFCFICVMTWAERTNTCPMCKARFNAVHRAPQKTARGLGETVEVEDRDPTAD 60
            C H FCF C+ TWA R NTCP+CK RF  + R      RG+ ++ +V +RD  +D
Sbjct:  218 CNHRFCFECIETWANRENTCPLCKIRFTKIGRLQNSNRRGIKKSKKVVNRDQRSD 272          
BLAST of mRNA_H-paniculata_contig14570.2739.1 vs. uniprot
Match: A0A6T7IYY9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7IYY9_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 7.430e-5
Identity = 26/60 (43.33%), Postives = 34/60 (56.67%), Query Frame = 0
Query:    6 CAHAFCFICVMTWAERTNTCPMCKARFNAVHRAPQKTAR-----GLGETVEVEDRDPTAD 60
            CAH FCF C+  WA+R NTCP+CK RF  + R    T        + +T  V++RD  AD
Sbjct:   15 CAHIFCFGCIEKWADRENTCPLCKVRFGKIDRIDMGTHNTRKRSSIKKTKRVKNRDQRAD 74          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14570.2739.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FGZ2_ECTSI3.640e-1548.28RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KDT9_9PHAE3.030e-1444.83RING-type domain-containing protein n=1 Tax=Ectoca... [more]
UPI001CF23A808.570e-642.22uncharacterized protein LOC114959687 n=2 Tax=Acrop... [more]
A0A7S0KY80_9STRA8.990e-645.45Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
A0A6T7IYY9_9STRA7.430e-543.33Hypothetical protein n=1 Tax=Attheya septentrional... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 2..69
e-value: 3.4E-8
score: 35.2
NoneNo IPR availablePANTHERPTHR47177:SF4coord: 5..60
NoneNo IPR availablePANTHERPTHR47177FAMILY NOT NAMEDcoord: 5..60
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..845
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.451
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 5..35
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 6..15
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 6..29
score: 9.288

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14570contigH-paniculata_contig14570:961..4173 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14570.2739.1mRNA_H-paniculata_contig14570.2739.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig14570 892..4356 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig14570.2739.1 ID=prot_H-paniculata_contig14570.2739.1|Name=mRNA_H-paniculata_contig14570.2739.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=846bp
MLEQACAHAFCFICVMTWAERTNTCPMCKARFNAVHRAPQKTARGLGETV
EVEDRDPTADNNSGDEDLAAELAEQEGSINGESDLDDDDDDPNLLATQHE
LHGYVLNDFVVDDDEVEVDTEDDDEEWEEWRKPAAAAQLEPRRQPRRAVA
VAAAAAATAAAIGSRRTPRTTSWFSTARRSPPCRLGRPRAFGTDMNEHVE
EVFFSPGNSFQRRPTYRGRAATAAAVAASERIGAAAGGRLRRGPETEGRS
ASSPSEVVEVDDDVLPDELRQLQREAARVLGKSPLRPRRRPPPGSRLPAT
TGATSTRPTRSTSASTSAASPFSLSWGQRSASSDNGVLGDVGNRRGDSNE
PSRLGREQGLLVDLVRASSPCHQRQRRRPVLRSLANARAPLRSILGGRGN
TITADDVSCCSQEEDEGTSCALGEIDCSNPVAAGAASPVCGRVEDPPTAA
AATTLFARGSSYRSAGAHGLAELNQGSTGGTEASSSSLPAQSVPRRHLSA
IGRGGARAGAGAGNSSGGSGFVSGQWIPRRVHGEEHRKTTTTASRAGTAL
TRPRGQEQQQSASASLTRTTTHRTGITGCDKSASSSGTTLFPRQCDGSSD
DAYSTDGFVTERTSVSISQGGRRAIVDATVGRGGVRGRSVHECATSRLVK
ESAQGSGGDGTGCGIVGFDDSDDDEEWMAQSPSVKLVVQRSERIQPGERE
RTARAKRGRDGKADVKDADKKRLQRRRFRGDSGDSDDDDEEGEMEFKWQE
EKTLSISSESDAREGTEFEEVDGEQTTPPVSPCVPLRTRLLQRQQERDRT
AAGKPRYVGSSSSFSSSAAARPTLPVSTWLQQFCFTGSATAATSP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR001841Znf_RING