mRNA_H-paniculata_contig145.2694.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig145.2694.1
Unique NamemRNA_H-paniculata_contig145.2694.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig145.2694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig145contigH-paniculata_contig145:21018..21680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size369
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig145.2694.1prot_H-paniculata_contig145.2694.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig145 21081..21680 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929154.8086874-UTR-H-paniculata_contig145:21017..210801622929154.8086874-UTR-H-paniculata_contig145:21017..21080Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig145 21018..21080 +
1691480751.7699335-UTR-H-paniculata_contig145:21017..210801691480751.7699335-UTR-H-paniculata_contig145:21017..21080Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig145 21018..21080 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929154.822952-CDS-H-paniculata_contig145:21080..212291622929154.822952-CDS-H-paniculata_contig145:21080..21229Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 21081..21229 +
1691480751.7809567-CDS-H-paniculata_contig145:21080..212291691480751.7809567-CDS-H-paniculata_contig145:21080..21229Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 21081..21229 +
1622929154.8396611-CDS-H-paniculata_contig145:21523..216801622929154.8396611-CDS-H-paniculata_contig145:21523..21680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 21524..21680 +
1691480751.7889166-CDS-H-paniculata_contig145:21523..216801691480751.7889166-CDS-H-paniculata_contig145:21523..21680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 21524..21680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig145.2694.1

>prot_H-paniculata_contig145.2694.1 ID=prot_H-paniculata_contig145.2694.1|Name=mRNA_H-paniculata_contig145.2694.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MDWEGVSAKVLQHVERCLPAVSDLQSAPEDQPLLGNPLHAGPWLANQSFS
HALSSDLPGRSGDMSTAPTRGGCDRRFADCASNQLESERGLLWAKRTPQH
DR
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mRNA from alignment at H-paniculata_contig145:21018..21680+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig145.2694.1 ID=mRNA_H-paniculata_contig145.2694.1|Name=mRNA_H-paniculata_contig145.2694.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=663bp|location=Sequence derived from alignment at H-paniculata_contig145:21018..21680+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGATCCGATAGGTACTATGGCAGAATGCAGGCCTGTTAGGTAAGTAGG
TGAGAACTGGGGTATGGACTGGGAAGGCGTATCTGCGAAAGTTCTCCAGC
ATGTAGAGAGATGCTTGCCGGCGGTGTCAGATTTGCAGTCAGCACCTGAA
GACCAACCGCTTCTGGGCAACCCTCTGCACGCTGGTCCATGGCTGGCGAA
TCAATCGTTCAGGTATACAGACAGTAGCAACGATTTTTAAGGTTGTATGT
ACTTCAACCTGCAGCCCAACTCACAGCACCATCAGGCATAGATTCTGTCA
TATCGTCGGCTTTACTGCAGCAAGACAACGTAGGGATGCTTCTTGATGTA
CGATAGTAGAACACGGTCCCGCAGGATGCGCTGCCACGCAACTGGAGCTT
GTTAGGTCACCGTGAAGTCGCTGTAAATGGCGTAAATAAATGTTGCAGCA
CGATTGTGTGATAAACTTACACCAATATCCTTGTCTTTACTATATACCCC
CAACAGTCATGCTTTGTCCTCAGATTTGCCTGGGCGAAGTGGTGACATGT
CCACAGCACCTACGAGAGGTGGCTGCGATCGGCGGTTTGCAGATTGTGCT
TCGAACCAACTTGAGTCGGAAAGAGGGTTGTTATGGGCGAAGAGGACGCC
ACAACACGATCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig145:21018..21680+

>mRNA_H-paniculata_contig145.2694.1 ID=mRNA_H-paniculata_contig145.2694.1|Name=mRNA_H-paniculata_contig145.2694.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig145:21018..21680+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACTGGGAAGGCGTATCTGCGAAAGTTCTCCAGCATGTAGAGAGATG
CTTGCCGGCGGTGTCAGATTTGCAGTCAGCACCTGAAGACCAACCGCTTC
TGGGCAACCCTCTGCACGCTGGTCCATGGCTGGCGAATCAATCGTTCAGA
TGGACTGGGAAGGCGTATCTGCGAAAGTTCTCCAGCATGTAGAGAGATGC
TTGCCGGCGGTGTCAGATTTGCAGTCAGCACCTGAAGACCAACCGCTTCT
GGGCAACCCTCTGCACGCTGGTCCATGGCTGGCGAATCAATCGTTCAGTC
ATGCTTTGTCCTCAGATTTGCCTGGGCGAAGTGGTGACATGTCCACAGCA
CCTACGAGAGGTGGCTGCGATCGGCGGTTTGCAGATTGTGCTTCGAACCA
ACTTGAGTCGGAAAGAGGGTTGTTATGGGCGAAGAGGACGCCACAACACG
ATCGATCATGCTTTGTCCTCAGATTTGCCTGGGCGAAGTGGTGACATGTC
CACAGCACCTACGAGAGGTGGCTGCGATCGGCGGTTTGCAGATTGTGCTT
CGAACCAACTTGAGTCGGAAAGAGGGTTGTTATGGGCGAAGAGGACGCCA
CAACACGATCGA
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