mRNA_H-paniculata_contig145.2695.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig145.2695.1
Unique NamemRNA_H-paniculata_contig145.2695.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig145.2695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig145contigH-paniculata_contig145:21018..24809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size515
Cds size327
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig145.2695.1prot_H-paniculata_contig145.2695.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig145 21206..24809 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929154.7309818-UTR-H-paniculata_contig145:21017..212051622929154.7309818-UTR-H-paniculata_contig145:21017..21205Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig145 21018..21205 +
1691480751.7294488-UTR-H-paniculata_contig145:21017..212051691480751.7294488-UTR-H-paniculata_contig145:21017..21205Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig145 21018..21205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929154.7436411-CDS-H-paniculata_contig145:21205..212291622929154.7436411-CDS-H-paniculata_contig145:21205..21229Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 21206..21229 +
1691480751.7401066-CDS-H-paniculata_contig145:21205..212291691480751.7401066-CDS-H-paniculata_contig145:21205..21229Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 21206..21229 +
1622929154.7583716-CDS-H-paniculata_contig145:23849..239961622929154.7583716-CDS-H-paniculata_contig145:23849..23996Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 23850..23996 +
1691480751.7531385-CDS-H-paniculata_contig145:23849..239961691480751.7531385-CDS-H-paniculata_contig145:23849..23996Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 23850..23996 +
1622929154.7682407-CDS-H-paniculata_contig145:24653..248091622929154.7682407-CDS-H-paniculata_contig145:24653..24809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 24654..24809 +
1691480751.7604988-CDS-H-paniculata_contig145:24653..248091691480751.7604988-CDS-H-paniculata_contig145:24653..24809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 24654..24809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig145.2695.1

>prot_H-paniculata_contig145.2695.1 ID=prot_H-paniculata_contig145.2695.1|Name=mRNA_H-paniculata_contig145.2695.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MAGESIVQTGTMERRMELAEGRIFGHEQDVGSLSVRCGRAEGMMAALLHR
QDDLDVKTSSIRDSLALLDRRSTSAERALRTAISEGQMMSAIRSVLGQFR
DQVGHFVRA
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mRNA from alignment at H-paniculata_contig145:21018..24809+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig145.2695.1 ID=mRNA_H-paniculata_contig145.2695.1|Name=mRNA_H-paniculata_contig145.2695.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3792bp|location=Sequence derived from alignment at H-paniculata_contig145:21018..24809+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGATCCGATAGGTACTATGGCAGAATGCAGGCCTGTTAGGTAAGTAGG
TGAGAACTGGGGTATGGACTGGGAAGGCGTATCTGCGAAAGTTCTCCAGC
ATGTAGAGAGATGCTTGCCGGCGGTGTCAGATTTGCAGTCAGCACCTGAA
GACCAACCGCTTCTGGGCAACCCTCTGCACGCTGGTCCATGGCTGGCGAA
TCAATCGTTCAGGTATACAGACAGTAGCAACGATTTTTAAGGTTGTATGT
ACTTCAACCTGCAGCCCAACTCACAGCACCATCAGGCATAGATTCTGTCA
TATCGTCGGCTTTACTGCAGCAAGACAACGTAGGGATGCTTCTTGATGTA
CGATAGTAGAACACGGTCCCGCAGGATGCGCTGCCACGCAACTGGAGCTT
GTTAGGTCACCGTGAAGTCGCTGTAAATGGCGTAAATAAATGTTGCAGCA
CGATTGTGTGATAAACTTACACCAATATCCTTGTCTTTACTATATACCCC
CAACAGTCATGCTTTGTCCTCAGATTTGCCTGGGCGAAGTGGTGACATGT
CCACAGCACCTACGAGAGGTGGCTGCGATCGGCGGTTTGCAGATTGTGCT
TCGAACCAACTTGAGTCGGAAAGAGGGTTGTTATGGGCGAAGAGGACGCC
ACAACACGATCGAATCGAAAGTATCAAACCACAGCAACATGTGAGATATC
GTGGGTATTCATCAACCCTAGCCCTGATGACTGACTACCAGTAGTGGTCT
AAATATCGCTTTAGAATATACATAATATACTACCTCTGTCCTAGACAGTT
TGGCTTATAACGATAATTTGTAAATATCTCTTTCAGTTTTGGGTTTCGTG
AAAAATAAATTATATCATTCCAAAGGTTACACAACTGTGGTTTGTATGTA
CTACTAGATATCTTCAAAATGTTTTAATTGTTGTAATTTTCAAGGGTTGA
GAATCGGGTACAGTACGGGTCGGATGATAAGAAACTCTTATTTCGGGTAG
GCTCAAAACCATACTTTGACGAGGATCACGAGCAGTGCTGTTTCCCACTT
TTATATGGGAGTTAGTGTAAACCCGCTTTTGGAGCCCTATTTCTTAGGCT
GGGTTTCTTTCGGGTCGACAAAAAGTGGGCGCCAGTTTCTTATAGTTTAA
TTTCTTACGATCAGGCCGGTACTGTGTCTCAACCCCTTTCTTTCGGAAGT
GGCAATTTTTGCAAAAATAGCTGAACAGGTCAAAATGGGATGAAAATCGT
GATGTTTTAAAAAGTCTCAAGAAGATCTCCAACTAAAATATGGTTTGTTG
TGTTGTATCCCTTGGCGTTTCATACTACGTAGTAAATAAAGTTGTTGTTC
ACTACTGCCATCCTCCCGATCAATTCTCCAATTGAAGGCCAAGTCGTAAG
CGGCTCTGTTAATCGGAACCAAGTGGCCCAAAAGCCCCTCGCGCTCCCTT
CTCCTACTCCCAGTATGCCCAATGCCTAAATCCTTTCTCCTCAGCTCTTT
CAACACTTGCTAGTACCGCTTGAAGAGGCTCCGCCAAATCAACTCTAGAG
TAGTACCGCATCATGTTGGCTCTACAAGCTCTCAACCCCCTCCATAATAC
GGGCTTCTTATTGTGTCAATCTAGATGGACAATCTATACCACAGTCATCC
TACGGTAGGGGGAGGGGTATTTGAGTCGCGTTGTTTAACAAAGAAGCCCC
GTTGGGAAGGGTATCTATATATATATGTATATATCTATCTATCTATCTAT
CTATCTATAATTGCATATTTTGTCCCCCCCTTAAACACAAATCCCATCTC
AACTCGTGGACTATGCACTTTAGGTATGCACAAACACATGCAGTTAACGT
GGCTTTGATTCGCGTTCTTGCTAGGCCGCTTTTGCGAAGCGGCCTTCGTT
CAACAATTGACCCCCTCCCTACCGTAGGGCGATTCACAGCCAAGTGTTGA
AAGCGCTGGGAGGAAACGATTTAGACATTGGGCATACCGGAGGCAGGAAA
ATGAAGCGTGAGGAGCTTTCGGACTACTTGGTCCCCAATTGACGGAGCCT
CTTACAAGGCGGCCTTCAAATGGTGGATTGATGGGGAAATAGCAGTAGTG
AACAACGAATTTCTTGTACTACGTAGTATGAAACGCCAAGGGATACAACG
CAAAAAATCAACCGTTAACCATGATTTTCATCCGATTTCCGCCTATTCGG
TTGTTTTTGCAAAATCTGTAGTTTCCGAAAAAAAACGAACGCATTGAGAC
ACCCGGTTCTCAGCCATTTCGATTTTTAAAACATGTAGCCTTTCCAATGA
TATGCTTTATTTTTCAAGAAAAATCACATGCCACAGCGTTTTTACAAAAT
ACCGTTATAACCCAGACTTATGGGACAGGGATGCATTAATACAATCGTTA
TACACGATATCCCGTAAGTCTGGCTTATCACGGCAATTTGGAAGTATCTT
CTGCAATTTTGGGTTTCGTGAAAATAAAGCATATCACTCGGAAGCCAACG
CGCTCATTATGTTCGTACACGTATCATTCGATATATACGTGCATACAGTA
TTAACCAAATTTTGCATCACTACATCACCAAATGTGAATTCGAAGAACGA
TTTGGAATGATGCGTCGTGTCCAAATGCAAGCGAAGTGGGCCGTTGTAAC
TAGGTCATGAGTTATAAAAGAGTAATACGTACCAGGATAAAACACGTACT
CGACGGAGACAGTCCTAGCTGGACCGCTACGTAGAAAGTAAAGCTAGCAT
GCAGCCGGCGGGGAGTTGCAAAGAGAGAATTGACGTGTGTGTGTTGTGTG
TTCCAATCTGTTCATTTTGTCGGTCTTCCTAGACAGGGACAATGGAACGT
CGGATGGAACTGGCAGAGGGACGTATATTTGGCCACGAGCAAGACGTCGG
AAGTCTTAGCGTCAGATGCGGACGGGCTGAAGGAATGATGGCAGCTCTCC
TTCATCGGCAGGATGATCTCGACGTGAAGGTACATTTGCCACGCATATCG
TTTTTGGTATACAATAGGTGCTTGCCTCAGATGGGCTGCAACGGGTTTTA
AAATAATAACCTATTTTCGGGCATTTGTGAGTGGGTGGAGAAATATGCGC
TCGCAGCTGAAGTCTGTTCATTGCATGTTGGAATTGCCTCAAATTACCCA
TCTGTGCCTGTCGGCCTCTGTGAATTGTCCACATATTGTATATACTCTCA
GGCTAAGTATATATACACACGCGAACACAGTGGTGAATCCGCGTTTTGCC
TCATTCACTCACCCAGTCGTCCAGGCACGAAGGGCCGTTCTAAACGAGGC
CATTTTTTGTCCGATTTTTCCGTTTTTTGAAAATTGGAAATCGTGATAAC
GAGCTTAACAACTTGACGACTTTGACCAAAGTACACCAGAAGTATGAAGG
CAATATCTTGTAGATTGGTTCCGCACTTTTCCCTCAACTTTGATTTTCCT
ATCACGGTTCTTTCCGAAACGGAAGAATCGGAATAATCGGAGAAAAAACA
GCCTCGTTTAGAACGGTCCTTGCATGGCTTATTCCGACGTTTGTTTTCCC
AGTATATTTCCTGTTTCCCTTTCTTGCTTTCACCTGTTGGCCCGTCGATC
TGTTCGCACCAACACCATCACTACTGAGCGAGAAAGACTAGCAGTATAAG
GGACAGTCTTGCCCTGCTCGATCGGCGATCCACATCTGCTGAACGTGCCT
TGCGCACAGCTATCAGCGAAGGTCAAATGATGTCTGCCATAAGGTCGGTC
TTAGGACAATTCCGAGATCAGGTGGGCCATTTTGTAAGGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig145:21018..24809+

>mRNA_H-paniculata_contig145.2695.1 ID=mRNA_H-paniculata_contig145.2695.1|Name=mRNA_H-paniculata_contig145.2695.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig145:21018..24809+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGGCGAATCAATCGTTCAGATGGCTGGCGAATCAATCGTTCAGAC
AGGGACAATGGAACGTCGGATGGAACTGGCAGAGGGACGTATATTTGGCC
ACGAGCAAGACGTCGGAAGTCTTAGCGTCAGATGCGGACGGGCTGAAGGA
ATGATGGCAGCTCTCCTTCATCGGCAGGATGATCTCGACGTGAAGACAGG
GACAATGGAACGTCGGATGGAACTGGCAGAGGGACGTATATTTGGCCACG
AGCAAGACGTCGGAAGTCTTAGCGTCAGATGCGGACGGGCTGAAGGAATG
ATGGCAGCTCTCCTTCATCGGCAGGATGATCTCGACGTGAAGACTAGCAG
TATAAGGGACAGTCTTGCCCTGCTCGATCGGCGATCCACATCTGCTGAAC
GTGCCTTGCGCACAGCTATCAGCGAAGGTCAAATGATGTCTGCCATAAGG
TCGGTCTTAGGACAATTCCGAGATCAGGTGGGCCATTTTGTAAGGGCGAC
TAGCAGTATAAGGGACAGTCTTGCCCTGCTCGATCGGCGATCCACATCTG
CTGAACGTGCCTTGCGCACAGCTATCAGCGAAGGTCAAATGATGTCTGCC
ATAAGGTCGGTCTTAGGACAATTCCGAGATCAGGTGGGCCATTTTGTAAG
GGCG
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