mRNA_H-paniculata_contig14497.2692.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14497.2692.1
Unique NamemRNA_H-paniculata_contig14497.2692.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14497.2692.1 vs. uniprot
Match: A0A6H5L0X6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X6_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 9.400e-25
Identity = 67/121 (55.37%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  298 AAVRGKQKSDNKRP--IQADDFPETKPEHWRRVKEAGVMFWFNDVTGVATDDCPHESLWS-LIERERELKER---ARDGKERAAVPKALDDLAFEVGQGEGTGALVYDSSEFEQAMRILDG 642
            AA   K+KS+NKR    + +  P   P +WRRVKEAGV FW NDVTGVATD+CPHESL      R+R +      A DG E   + + LD + F+ GQ EGTGALVYDSSEF+QAMR+LDG
Sbjct:   16 AARANKRKSENKREGMRKVELSPNGDPVNWRRVKEAGVWFWINDVTGVATDECPHESLRPPRAARKRSMPREGSIAGDGSE--TLLECLD-IDFD-GQEEGTGALVYDSSEFQQAMRLLDG 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14497.2692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L0X6_9PHAE9.400e-2555.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14497contigH-paniculata_contig14497:2725..5882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_000740.1
Exons3
Model size642
Cds size642
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14497.2692.1prot_H-paniculata_contig14497.2692.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14497 2725..5882 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929154.4313586-CDS-H-paniculata_contig14497:2724..30731622929154.4313586-CDS-H-paniculata_contig14497:2724..3073Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14497 2725..3073 -
1691480751.5607443-CDS-H-paniculata_contig14497:2724..30731691480751.5607443-CDS-H-paniculata_contig14497:2724..3073Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14497 2725..3073 -
1622929154.4449706-CDS-H-paniculata_contig14497:3958..40501622929154.4449706-CDS-H-paniculata_contig14497:3958..4050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14497 3959..4050 -
1691480751.5732522-CDS-H-paniculata_contig14497:3958..40501691480751.5732522-CDS-H-paniculata_contig14497:3958..4050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14497 3959..4050 -
1622929154.4610014-CDS-H-paniculata_contig14497:5681..58821622929154.4610014-CDS-H-paniculata_contig14497:5681..5882Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14497 5682..5882 -
1691480751.5828054-CDS-H-paniculata_contig14497:5681..58821691480751.5828054-CDS-H-paniculata_contig14497:5681..5882Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14497 5682..5882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14497.2692.1

>prot_H-paniculata_contig14497.2692.1 ID=prot_H-paniculata_contig14497.2692.1|Name=mRNA_H-paniculata_contig14497.2692.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=214bp
MRSNSAHSSAMADEAAQRYAARMVYLTEDDEVPGFINTTLEPMGRTLKPP
ALFMSRRQALADSTLSAQRANKKGTASDPLRGVRAQAMEKKPLVARRNDA
AVRGKQKSDNKRPIQADDFPETKPEHWRRVKEAGVMFWFNDVTGVATDDC
PHESLWSLIERERELKERARDGKERAAVPKALDDLAFEVGQGEGTGALVY
DSSEFEQAMRILDG
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mRNA from alignment at H-paniculata_contig14497:2725..5882-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14497.2692.1 ID=mRNA_H-paniculata_contig14497.2692.1|Name=mRNA_H-paniculata_contig14497.2692.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3158bp|location=Sequence derived from alignment at H-paniculata_contig14497:2725..5882- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGATCAAATTCTGCCCACTCATCAGCGATGGCTGACGAGGCTGCGCA
GCGGTATGCGGCGAGGATGGTGTATCTCACGGAGGACGACGAGGTACCCG
GGTTCATTAATACAACACTGGAACCTATGGGAAGGACGCTGAAGCCGCCG
GCTCTATTCATGTCTAGGCGGCAAGCTTTAGCTGATTCTACCTTGAGCGC
GGTGAGATTATTTTGATTCTGTAAAATCAACTCGATCAATTCCGACAGAA
AAAGAGTACAAAAAATACACTAGAGCACAGATGTGGTGCCGCGTCCGCAC
CACAGACAGCACTACAGTCCATGTCTGCCACAGTTCCCAACTTGAAGGAG
TGCTCGGGGCTCCTGGTCAGGAAAACTTCTACATATAAAAACGGTGTACT
GTTATGCTCACTTGAATTCTAGAAACGTACTAGTTTAGTCGTTGAGGCAA
GTATTGTCTACAAGTTAGGGCCGATGTTCAACCTCAACTGACTGTAAACA
GATTGAGGTGTACAGGAACGGATTGGACAAACACAAGACCCTGGCAGTCC
CTTCTTGCTTCAGTTCTCGTTTTTCGCGTATGTCTTGATTGGTAGCAGTG
GGGTGTGACGTGGAAATACCATGCATTCAACGATGGTTGACGTGTCCATT
TCGAAACTTTGCTCGTCATATCGCCAAGTTTTCAAACTTTGCTCTGTCGA
ATACTCCGTCCCCGCGGTCGCCCGTCGTCATTGTTTTAACGTGGACCTTT
GCCGTTTGACAATAAAGGCCCGTCAAGAAATTTTATTCCTACCATCTACG
TGGATGGTCGTGCTTTATGGTCTATGTATGAGGGCGTTGCTTCAAGCCAA
ATACAACAATTACTGTTTTCACGAAAACAACACACTATATGCGAAGCAAT
CGCAAGTCAGAGTCTCGTCTACTAAAGTGTTCGACGGTGCCAATAGTAGG
CGAGTTCAATGTTTTGCGGAAAATAATACGACGAACCATAAGACGCACCC
ATGCGAATGACGTGCGAGTGCCTCACTAACTCATAGCGAGAGCCTAGTCC
CCTTCGTGAGAGTACCAAAGCGCTGAGTTACAGCAGGTACATTGTTTCAC
CAGACTATCGGAGAGCGAGTCTCGAACAGCAACATTTGAAGTCACCAGGG
TAGGCGAGTCCAGCAGAGGAGGCCCAGGGTAGGTCATGACTCAATTCATA
TCGATCGGACACATGAGACGCTGATAAAGTATGAAACGGCACAAGACAAT
CCGGCCAGGAATCAAGATATGAACGGTATATTTCCAAAATGATGTTAAAC
TTACAGATGAGGTCCAACCCCAAAACAGTCACTAATGCTTTCCCTAACCT
AAAGTCATGACCAATTAGCTACCTTTATTTGGAGGGCCCAAGGCCACTAA
TCGCATCGTAACTACTTCAGGGTCTTTCACTACTTCCGCGCCCCCACAGC
CTTGTGCGAAAACACTCATTTTGGGTTCAAACTGCCGATACTTTCCCTCG
AAATCGTGGCAAAATGTGCTTTCGCACAACGCTGTGGGGGTATAGAAATA
GTGAAATGCCTTAAGTAGTTACAACGCGATCGAGGGACATCGCGTCCTCG
AAATAAAGGTAACTGGTGATGACTTCAGGTTAGTTTTGGGGTTGAACCTC
ACTTACGAGAATACACTTTTACTTGTGATAAAAACATCTATGTACCTGGC
AAATGCCAATACCCGCGTAAGAAAAATCGATGGTTGTGTGCGTGACACGT
GGGACCACAGACAAACAACTCGTCACTCGCGCGACCTGTCTAACCATTTT
GTTCGTGAAATTCAATTCGGGATGCGGTGCAGCAACGGGCGAATAAAAAG
GGAACTGCATCGGACCCTCTCCGCGGTGTGCGAGCCCAAGCAATGGAGAA
GAAGCCGCTGGTAGCAAGGAGAAAGTGAGTTGTCGTGTTCATAACTCTCA
ACTGAACAAGCCGGGCCAATGATCCCTTTACAGCCACACTTTGTCTCCCG
ATAATTTCAAGCTTACCGTAGGAGCCAAGTGACTAGGAAAGAGACCTATA
CCCTCAACCTCTACGTGTTATGAGGATAGAACCTCCTTGCACTTGTTGGC
AATTGGTTACACTTTACGTTTAGCTTAACGGACACACCGACATACGACCA
ATATACCCCATTATCCCCATTGTAGTACCAAAGTTTACACGCATTGCCTG
GTGCTATATATCCACAGTAGTAGTCATCGTAACGATCAGGGTCACATAAA
TATCACTATTTTTGCACGGTGTCATGTACTCCAAGGCGCACAAACACCCG
ACAATCACAACAAGCTCTTTCAGCTGAGACATGGCTGTTTGCGAACAGCT
CGTCATTTAGTGATAATGTACGGTCGTCGGTGAATAGGTCAATATCTGGC
TTCCTTTTTTTTTTGGTGACAATGCCTTCGAGGCTGGAAACAACTGCGAG
GGAATCCATCTATCTGTACTTGATAAGCGGTTTCGTACGAAACTATGCGT
GAAAACTCGCATAGCTACGACACGAGTAGCTGATTTCGTTGCAGCAGATG
TCCAGACTCGATGTCCCCGTATCAAAGCAGACACTCTATAATACGACCGA
AGAAAGAGACTACTGATTCATGCTGCCATCGTCCGTCCCGTACACCCAAA
CAACTGAAGGCAATAAAGCGTTGGCATGGTGGGCGTCGGGAAAATGAGGC
CGCTTCGAGCCCAAAACGATGAGGCTTTGTGGCATCTCTCTCCTACGCTG
CACTCAATTCCCTGGCCTACCCTTCACCCCCCGCCCCCCTTGTGCCAATC
CTCCATCAGCGATGCAGCGGTGAGGGGCAAGCAGAAGTCGGACAACAAAC
GCCCCATACAGGCTGACGATTTCCCAGAAACCAAACCCGAGCATTGGCGT
AGGGTCAAGGAGGCAGGGGTAATGTTTTGGTTCAACGACGTCACAGGCGT
TGCCACAGACGATTGTCCTCACGAGTCTCTGTGGTCTTTGATAGAGAGGG
AGAGGGAATTGAAGGAACGAGCAAGGGATGGAAAAGAAAGGGCTGCAGTT
CCCAAGGCTCTTGACGATTTGGCGTTCGAGGTCGGGCAGGGCGAGGGTAC
TGGTGCGCTTGTCTACGACAGCTCCGAGTTTGAACAAGCGATGCGAATAT
TGGACGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig14497:2725..5882-

>mRNA_H-paniculata_contig14497.2692.1 ID=mRNA_H-paniculata_contig14497.2692.1|Name=mRNA_H-paniculata_contig14497.2692.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1284bp|location=Sequence derived from alignment at H-paniculata_contig14497:2725..5882- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGATCAAATTCTGCCCACTCATCAGCGATGGCTGACGAGGCTGCGCA
GCGGTATGCGGCGAGGATGGTGTATCTCACGGAGGACGACGAGGTACCCG
GGTTCATTAATACAACACTGGAACCTATGGGAAGGACGCTGAAGCCGCCG
GCTCTATTCATGTCTAGGCGGCAAGCTTTAGCTGATTCTACCTTGAGCGC
GATGAGATCAAATTCTGCCCACTCATCAGCGATGGCTGACGAGGCTGCGC
AGCGGTATGCGGCGAGGATGGTGTATCTCACGGAGGACGACGAGGTACCC
GGGTTCATTAATACAACACTGGAACCTATGGGAAGGACGCTGAAGCCGCC
GGCTCTATTCATGTCTAGGCGGCAAGCTTTAGCTGATTCTACCTTGAGCG
CGCAACGGGCGAATAAAAAGGGAACTGCATCGGACCCTCTCCGCGGTGTG
CGAGCCCAAGCAATGGAGAAGAAGCCGCTGGTAGCAAGGAGAAACAACGG
GCGAATAAAAAGGGAACTGCATCGGACCCTCTCCGCGGTGTGCGAGCCCA
AGCAATGGAGAAGAAGCCGCTGGTAGCAAGGAGAAACGATGCAGCGGTGA
GGGGCAAGCAGAAGTCGGACAACAAACGCCCCATACAGGCTGACGATTTC
CCAGAAACCAAACCCGAGCATTGGCGTAGGGTCAAGGAGGCAGGGGTAAT
GTTTTGGTTCAACGACGTCACAGGCGTTGCCACAGACGATTGTCCTCACG
AGTCTCTGTGGTCTTTGATAGAGAGGGAGAGGGAATTGAAGGAACGAGCA
AGGGATGGAAAAGAAAGGGCTGCAGTTCCCAAGGCTCTTGACGATTTGGC
GTTCGAGGTCGGGCAGGGCGAGGGTACTGGTGCGCTTGTCTACGACAGCT
CCGAGTTTGAACAAGCGATGCGAATATTGGACGGGCGATGCAGCGGTGAG
GGGCAAGCAGAAGTCGGACAACAAACGCCCCATACAGGCTGACGATTTCC
CAGAAACCAAACCCGAGCATTGGCGTAGGGTCAAGGAGGCAGGGGTAATG
TTTTGGTTCAACGACGTCACAGGCGTTGCCACAGACGATTGTCCTCACGA
GTCTCTGTGGTCTTTGATAGAGAGGGAGAGGGAATTGAAGGAACGAGCAA
GGGATGGAAAAGAAAGGGCTGCAGTTCCCAAGGCTCTTGACGATTTGGCG
TTCGAGGTCGGGCAGGGCGAGGGTACTGGTGCGCTTGTCTACGACAGCTC
CGAGTTTGAACAAGCGATGCGAATATTGGACGGG
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