mRNA_H-paniculata_contig14477.2688.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14477.2688.1
Unique NamemRNA_H-paniculata_contig14477.2688.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14477.2688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14477contigH-paniculata_contig14477:2447..6287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size577
Cds size576
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14477.2688.1prot_H-paniculata_contig14477.2688.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14477 2447..6287 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929153.4718974-CDS-H-paniculata_contig14477:2446..25971622929153.4718974-CDS-H-paniculata_contig14477:2446..2597Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14477 2447..2597 -
1691480751.2415307-CDS-H-paniculata_contig14477:2446..25971691480751.2415307-CDS-H-paniculata_contig14477:2446..2597Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14477 2447..2597 -
1622929153.48193-CDS-H-paniculata_contig14477:3584..38641622929153.48193-CDS-H-paniculata_contig14477:3584..3864Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14477 3585..3864 -
1691480751.2497768-CDS-H-paniculata_contig14477:3584..38641691480751.2497768-CDS-H-paniculata_contig14477:3584..3864Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14477 3585..3864 -
1622929153.4914613-CDS-H-paniculata_contig14477:6142..62871622929153.4914613-CDS-H-paniculata_contig14477:6142..6287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14477 6143..6287 -
1691480751.2645109-CDS-H-paniculata_contig14477:6142..62871691480751.2645109-CDS-H-paniculata_contig14477:6142..6287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14477 6143..6287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14477.2688.1

>prot_H-paniculata_contig14477.2688.1 ID=prot_H-paniculata_contig14477.2688.1|Name=mRNA_H-paniculata_contig14477.2688.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=192bp
SAKFQEFKEVEQLKKWNKWGKQQSGDDMTDGDADGLVRPPQQLRQGPKAP
GSSGTESPLDSISPRAGGGCSLGAISDASAFNVHDAPAGQSSSAGTSPTE
VAATEEHDDHVNAAGRGGGRGGASPRPPPSPSPSQASVHSNRRAGPGRPP
GGSGGGSSSNRKSAPSAGVGVSRGNGGSGDGGGGGGGSGKVG
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mRNA from alignment at H-paniculata_contig14477:2447..6287-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14477.2688.1 ID=mRNA_H-paniculata_contig14477.2688.1|Name=mRNA_H-paniculata_contig14477.2688.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3841bp|location=Sequence derived from alignment at H-paniculata_contig14477:2447..6287- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGCGAAGTTTCAAGAGTTCAAAGAGGTGGAGCAGCTCAAGAAATGGAA
TAAATGGGGCAAGCAGCAGTCTGGTGACGATATGACCGACGGCGACGCGG
ATGGCTTGGTACGACCTCCCCAACAGCTCCGACAGGGACCTAAAGGTACC
GTCAAGTCAGCTGTCCCGTTGTTCAGGGCACCGTGGGTATTGTAACGACG
ATTGCGGGGGAGGAAGGGGGGCAGGGGGCGCTAATGAAGTAGGGACATGT
AATCATGTACGTTTTTAGAGTTAGAAACAGAGACAGGTTTTTATTGTTGC
CAAATCAATACGAGCAGGTTGATGGATGATGACGATGACGTTCCTCTTGG
AACAATTTCCATTCTGTATCTCCCAATTTTTTTATTCAAGTGTCATGCGC
CACTGATGTTCTCCGAGTAGTATAGCTTGTTGCTGCCTGCTGGTGAGAAT
TTTATATCAGGAATTTTCATGTGACTGGCATTACATGTGTCCTTTTAACA
TGACCCGATCCGCGAACCGGTTCGCGTTTGATCATGTGTGATTTTTTTTA
TATATTTCCGGTCAGTTCGCGGTTGGTCATGTGAAAGTTTGTCCTGTTCG
CAATCGATTATGTGACTGTGCGGTTCATGTGAACAGCCGTGGTAGGTACT
AGAGAGCTAAGATGCAACATGAGGGAACACGATGCTGACGAACGCTTGTT
CACGGACAGCTCTTGCGGTCAATCAAGTTGACTCCAGTCTCCCACAACAA
GGCTGCTTTTGACCTAATCTGTTGAAATATAATTGGAATAAAACTCAATA
AAGTCAGACACGAAGATTGGTAGTAATGGAACCTGGTAAGAATCGAAGCG
TTCCGTTAAGTACCCAGTAGAGAATGTCTTCATGTCGACGGAAAAGGAGA
TTATACTTCGGCCTGGCTAGGCAACCCACTCCACGTTACTTGTTCCCTGC
CTGCTTTTATGACTTATTTTTGCCCCTCGGACGAAATACGATTAGTTGCA
GTTGGGAGCATGACCATTCGCAACCAGAAAATTTCGAAATGATTCCTCTG
AACGTTTAGCGTGAGCACGATTGTTCTACATGTATCTGTCCCGGACTAAT
CACGACTGCTCCGAATAACAGTAAAACGAATGAAAAAACAGGCGGGGTCA
ACACTTTGTTCAGTTCGTCCGCATATAGTGTACCTTTATATAGTGTACCT
TTCAGGTGAACAATGAAAAATACGTTTCAGAATTCTGATGCCTAGATATG
TTATTTCTCGCCTCCTATAATTTTGTCTCCTGTAAATGGTGATGCGGAGC
TTGTTTCAATATAGAGGAAAATAATCGCTTTTTGGGGTTATCTCCGATAC
GTACGTATGCTGTTTCTTTCTCTGCAGCACGGAATTGATAACTAGTGCTC
AACCCTTCACGAGCTGGACTTGGTAGCGACCAGTAGATATATTTACTGAA
GACCAAGTTATGCATAATGACCTATACATTACAGAATGCTTAACTAACTT
CAGATATCTAGGCTATCCTAATTCAGGTTCCCCAAATGCCGGTCATCTTT
TTTCGATTGAGCCTTGAAAAACGGAAGTAAGGATTAAGCATGAAAACGGG
AGACTTGATTAATCGTGAAGAATGTTTATTTATTATTATTTTGAATGTAA
AGTTGACTGGGATGTATAGGCTCCGAAAAGGTTGCCCTTTCCCCTCGACA
TATACCATTCTTGGAGGTAAAAATTGGGCTAAAAAGGCGCAGGTCAAGGT
GGATAGAATAGAAAAAACCTGTTTGAGCCACAGTTGGTGACGTAGGAAAG
AGCTATCGGTTATCGAAGATCCCACTTATAGAAACAAAGCGCCGTCCTCT
CGAGGACGCGTGGCCCGTCGGTCTAGCAACTGTGGTGTGCAGAACATTTG
TAAGTCCCCCCCGCTTGTGAGATCTAGTGTTGGTCATAAGTGTGCACAAC
CCAGATTTTGAGGTCGGCGGCACAAGCTCAAGGTTGGGTACGATGGATTC
ATTGATGAGCGTTTTATATCTAACTCTGGTAAGTGAGTCCACTTGTGAAT
GAAGCTTGCTATATATACACAGGGTGTGTTGTTTCTGTCGCGCGTTCGCT
TGAATCTCCCTCCCTCCAGCACAGAGGCCTTTACATCCTCGGATTGCGAA
TATTAGGGGATAGTTGCTATCTCCAAGAGAGATAGAAATTGGCCTGAACA
GGGGAGGGTTGAGGTAAATAGGGTAGATGGAAAATTTTGAGCCAAATTTG
GTAACCTAGGAAGGAGCATTTGGCCATTGTAAATACCTCTGATGAAAGCA
AAAGCTCCGTTTTCTCGAGGACGCGTGGTTGAGAGTCTAAGAGCTACTGC
GTGCAAAATGTTAATACACCCCCCACCTCCATCCCGTCATTGCCGCCGCC
CCCACGGTGAATTGAAAATACAGCGCCTGGGTCATCGGGTACAGAAAGCC
CACTAGACTCCATCTCTCCCCGGGCAGGGGGCGGCTGTAGCTTGGGCGCT
ATTAGCGACGCCTCGGCGTTCAATGTTCACGATGCACCTGCTGGCCAGTC
CTCCTCTGCTGGTACGAGTCCGACAGAAGTAGCAGCAACAGAAGAGCATG
ATGACCATGTTAATGCAGCAGGGAGAGGAGGTGGACGAGGAGGAGCATCG
CCGCGACCGCCGCCATCGCCGTCACCGTCCCAGGCTTCAGTCCATTCTAA
CAGGTACAGTGACCCGCCACTGTTCGACTCGGTCCGCATGGTTCGGGGGC
GTTACCTTGCATGTCTTACTTGAGTACTAGTTGTCCTTGCCCCTTCATTG
AACACTGCTCATTTTTCCCCTCCTGTCCGGAAGGAACGTCGGCTATCCTT
ATCCATGGCAAAGGGCTATCTTGACACCCACGCCTTGTGCTCCCTATCTC
TCTTCATCGGCTGTTGTAGCTAGACCAAACCTAGTGGCGCGTTATCCTGT
GAAACATTAATTTGGATAGAGAATAGAAATTTTCACGAGAAAAACATCAC
GATGATGATCAAGACGATCATTATTACCGTATTAAGTAGTAAGGATGCGT
TACTTTTTTTTTTTTTTTTTTTTTAAACCCCCGGAAGGCTGAGGCAAAAA
CCTCTATCCGATGCTTCCATACTTGAGTATTTCACCGAAGTATGTCTACG
TTTCCTTTAACAGAACAGAGTTATTTGTTCCTCTGCGGGGTAGGCGCCAT
CCCGGTTCGACTGAACCAGGTAGGCAGTGTGGGGGGTTGCACCCACTAAA
ACGCCTCTGACTAGACTTCCAGTCATGCTCAGTTCACGAGCTACCCTACC
CGTTCGGGCGTAGGTCCGTGAGGGATGCGTTACTTGACTCAAATCACACG
GAAGTATTACTCAGATCCATAGGTCCTACTCAATCAACGCAATGTAATAT
AAAACACAATATGGTATAGTATAACACGTTGTCGCATCATTCTAGCCCCC
TTGATATTTGTATAAAATCTAGCACATGCCATGACATCAGAAGCCAATAC
CCGTCCACAAGAGTATCTTGATGAGTGGTGATGTTTCTATGTTCATTTAT
GTACGGTATTTTTGCGCTGATTGCCTGAGTAGCTCAGTGGAGAGCTACTT
TCTGTATATATCCTTCGACCGCGGGTCTGATGGATTGGACTGAAATATCG
CAGAAAAACTAATGTACTTGACGGCACCTGCCCTACACAGGCGAGCGGGA
CCGGGTAGACCCCCAGGTGGTAGCGGCGGTGGCAGCAGCAGCAACAGGAA
ATCTGCACCTTCTGCCGGTGTGGGTGTTAGTCGTGGGAATGGTGGCAGCG
GCGACGGCGGCGGGGGCGGTGGCGGGAGTGGCAAGGTTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig14477:2447..6287-

>mRNA_H-paniculata_contig14477.2688.1 ID=mRNA_H-paniculata_contig14477.2688.1|Name=mRNA_H-paniculata_contig14477.2688.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at H-paniculata_contig14477:2447..6287- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGCGAAGTTTCAAGAGTTCAAAGAGGTGGAGCAGCTCAAGAAATGGAA
TAAATGGGGCAAGCAGCAGTCTGGTGACGATATGACCGACGGCGACGCGG
ATGGCTTGGTACGACCTCCCCAACAGCTCCGACAGGGACCTAAAGAGCGC
GAAGTTTCAAGAGTTCAAAGAGGTGGAGCAGCTCAAGAAATGGAATAAAT
GGGGCAAGCAGCAGTCTGGTGACGATATGACCGACGGCGACGCGGATGGC
TTGGTACGACCTCCCCAACAGCTCCGACAGGGACCTAAAGCGCCTGGGTC
ATCGGGTACAGAAAGCCCACTAGACTCCATCTCTCCCCGGGCAGGGGGCG
GCTGTAGCTTGGGCGCTATTAGCGACGCCTCGGCGTTCAATGTTCACGAT
GCACCTGCTGGCCAGTCCTCCTCTGCTGGTACGAGTCCGACAGAAGTAGC
AGCAACAGAAGAGCATGATGACCATGTTAATGCAGCAGGGAGAGGAGGTG
GACGAGGAGGAGCATCGCCGCGACCGCCGCCATCGCCGTCACCGTCCCAG
GCTTCAGTCCATTCTAACAGCGCCTGGGTCATCGGGTACAGAAAGCCCAC
TAGACTCCATCTCTCCCCGGGCAGGGGGCGGCTGTAGCTTGGGCGCTATT
AGCGACGCCTCGGCGTTCAATGTTCACGATGCACCTGCTGGCCAGTCCTC
CTCTGCTGGTACGAGTCCGACAGAAGTAGCAGCAACAGAAGAGCATGATG
ACCATGTTAATGCAGCAGGGAGAGGAGGTGGACGAGGAGGAGCATCGCCG
CGACCGCCGCCATCGCCGTCACCGTCCCAGGCTTCAGTCCATTCTAACAG
GCGAGCGGGACCGGGTAGACCCCCAGGTGGTAGCGGCGGTGGCAGCAGCA
GCAACAGGAAATCTGCACCTTCTGCCGGTGTGGGTGTTAGTCGTGGGAAT
GGTGGCAGCGGCGACGGCGGCGGGGGCGGTGGCGGGAGTGGCAAGGTTGG
GGCGAGCGGGACCGGGTAGACCCCCAGGTGGTAGCGGCGGTGGCAGCAGC
AGCAACAGGAAATCTGCACCTTCTGCCGGTGTGGGTGTTAGTCGTGGGAA
TGGTGGCAGCGGCGACGGCGGCGGGGGCGGTGGCGGGAGTGGCAAGGTTG
GG
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