mRNA_H-paniculata_contig14454.2680.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14454.2680.1
Unique NamemRNA_H-paniculata_contig14454.2680.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14454.2680.1 vs. uniprot
Match: A0A6H5JY04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY04_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 7.700e-52
Identity = 88/130 (67.69%), Postives = 104/130 (80.00%), Query Frame = 1 
Query:   10 RRRKIEPLPVEIQLGSNSVRLTRDGWKLDSTELSRVRVECRRLEQEALELRRDLEACRAEAKDSTEQANMATFQNQLLLDMLAVARMDEENFKTRLAQETARHAELSRGLELAYTKMLGAGLDPGISDPP 399
            RR+K  PLP+EIQLGSNS+ LT  GWKLDS EL+  + EC+RLE+E + LRRDLE CR +AK   EQ NMATFQNQLL+DMLAVAR D+  F+T+L QE+ARHA LSR LE AYTK+L AGLDPG+SD P
Sbjct:   57 RRKKEPPLPIEIQLGSNSLELTPQGWKLDSRELATAQGECKRLEKEVMGLRRDLENCRKDAKRLAEQENMATFQNQLLIDMLAVARADQGIFRTKLEQESARHAVLSRSLEQAYTKLLAAGLDPGVSDAP 186
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BLAST of mRNA_H-paniculata_contig14454.2680.1 vs. uniprot
Match: A0A7S2V5X1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5X1_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 4.730e-14
Identity = 44/123 (35.77%), Postives = 66/123 (53.66%), Query Frame = 1 
Query:   28 PLPVEIQLGSNSVRLTRDGWKLDSTELSRVRVECRRLEQEALELRRDLEACRAEAKDSTEQANMATFQNQLLLDMLAVARMDEENFKTRLAQETARHAELSRGLELAYTKMLGAGLDPGISDP 396
            PLPV I LG N +  T  GWK+D ++  R+  E   L+ +  +L++       +   + E+ NMA FQNQLL++M+AVA+++ +     L  E  R  E  R LE  Y  ++ AGL P    P
Sbjct:   36 PLPVSISLGDNQLTFTDQGWKIDDSDTKRLEAENESLKLQLEKLKQLCLQGEEDLNQAVEEKNMAVFQNQLLVEMVAVAKVELKTAGEDLEVERRRTLEYRRELERCYQVIVDAGLQPPXXXP 158
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BLAST of mRNA_H-paniculata_contig14454.2680.1 vs. uniprot
Match: A0A5D6XFD6_9STRA (Protein kinase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XFD6_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.940e-8
Identity = 38/117 (32.48%), Postives = 62/117 (52.99%), Query Frame = 1 
Query:   31 LPVEIQLGSNSVRL-TRDGWKLDSTELSRVRVECRRLEQEALELRRDLEACRAEAKDSTEQANMATFQNQLLLDMLAVARMDEENFKTRLAQETARHAELSRGLELAYTKMLGAGLD 378
            +P+ + LG  ++R+  + GW+L+ + L  +    + LE     L  +  A R      TE+ANM  F+ QLL++MLA+A +DEE  K+   QE A+ A + R +     +    GLD
Sbjct:   28 IPIRVTLGGATLRIGAQGGWELEHSALQELAAHAKELETSNSNLVSENAALRERCARLTEEANMDKFKCQLLIEMLALASLDEERSKSEAEQEKAKAASVQRDMLALLEQAQREGLD 144
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14454.2680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JY04_9PHAE7.700e-5267.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V5X1_9STRA4.730e-1435.77Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A5D6XFD6_9STRA1.940e-832.48Protein kinase domain-containing protein n=1 Tax=P... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14454contigH-paniculata_contig14454:3374..4962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog4792.ETI50086
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Chibby family
EggNOG OGs2E3IV@1,2SAKW@2759,3QHYN@4776
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-21_004460.1
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons3
Model size402
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14454.2680.1prot_H-paniculata_contig14454.2680.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14454 3374..4962 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929152.4227395-CDS-H-paniculata_contig14454:3373..34671622929152.4227395-CDS-H-paniculata_contig14454:3373..3467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14454 3374..3467 +
1691480750.7337177-CDS-H-paniculata_contig14454:3373..34671691480750.7337177-CDS-H-paniculata_contig14454:3373..3467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14454 3374..3467 +
1622929152.4913285-CDS-H-paniculata_contig14454:4068..42261622929152.4913285-CDS-H-paniculata_contig14454:4068..4226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14454 4069..4226 +
1691480750.7473185-CDS-H-paniculata_contig14454:4068..42261691480750.7473185-CDS-H-paniculata_contig14454:4068..4226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14454 4069..4226 +
1622929152.5095563-CDS-H-paniculata_contig14454:4812..49621622929152.5095563-CDS-H-paniculata_contig14454:4812..4962Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14454 4813..4962 +
1691480750.7628145-CDS-H-paniculata_contig14454:4812..49621691480750.7628145-CDS-H-paniculata_contig14454:4812..4962Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14454 4813..4962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14454.2680.1

>prot_H-paniculata_contig14454.2680.1 ID=prot_H-paniculata_contig14454.2680.1|Name=mRNA_H-paniculata_contig14454.2680.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
MGFRRRKIEPLPVEIQLGSNSVRLTRDGWKLDSTELSRVRVECRRLEQEA
LELRRDLEACRAEAKDSTEQANMATFQNQLLLDMLAVARMDEENFKTRLA
QETARHAELSRGLELAYTKMLGAGLDPGISDPP*
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mRNA from alignment at H-paniculata_contig14454:3374..4962+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14454.2680.1 ID=mRNA_H-paniculata_contig14454.2680.1|Name=mRNA_H-paniculata_contig14454.2680.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1589bp|location=Sequence derived from alignment at H-paniculata_contig14454:3374..4962+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTTTTCGCAGAAGAAAAATAGAGCCGCTGCCGGTGGAGATCCAACT
TGGATCGAACTCGGTGCGTCTTACCCGAGATGGCTGGAAGCTCGGTGAGG
TGAATCACATGCGCCCCGAAGTAGTTGGATGTCTTTTTTATTCATGTTCA
TTTGTCGTTCTCTAGACTAAAAAAAGTCCACGCGTTCATGACATTATGAA
CCGTTAGGGCCGCACCGCATCGTTATATTGTGTGCTCTTTTGCAGTAAAT
TCAAACCATAACTTGGTTTTAGTGACGCCACGACAACGATTTTCACCTTC
CTCTTTGCAGATGGTATGTAAGTGTCACAGTGGGTCATTTATCCGGAGGG
CAAGTAAACAAATACTCTCAATTCAACCAGACGCAAGTTCTGCCAACCTT
AATGTAATGAAATATGAGTTGTTCTTTGATTCGGCGTGTCGGGCGAAACA
GACCGAAACCACCCTCGAAGCTGGACGACGACGCCCGCTCAAGACTATAG
CCGACAACAACAAGCCGCTTGAGGGCACAATTCACTTCAGTGCATATACC
GCACCATCCACGTGAAACGAATATACAAGAAGGTGCACACTCATCGCGCA
GGGAATAATATTAATCAGGTTTCCTCAAACTGAACTACAACACCATCGGC
GTCCTGAAGACCAAAACAACGTATTTTTCGAAATAATTCAACCAGACTCG
ACGGAACTCTCGAGGGTCCGGGTAGAATGCCGGCGTTTGGAGCAAGAGGC
ACTAGAGCTGCGACGAGACCTAGAGGCCTGCCGAGCAGAGGCGAAAGACT
CGACAGAGCAAGCCAACATGGCTACGTTTCAGAATCAGCTGTTGCTTGAT
ATGGTGAGAGACGAAAATTAGGGGCATTTGAAAATTCTAGTGCAGGAGTC
ATCGGGCCTTCTTACTCCTGATAAAGGAGTAGTTAGAGACTCTGCAGATA
TCTCTCACGGGCCAGGAATGTGTACCGACGAACGTTTCAGCAGCGAGTTT
TTCGTCATAACCCTTGTTAGAACCCATCCGTTGAAGACCGAATGCATTCA
GTCAAGAGCATGTTAAAACATCAGCATTTGGCGACCAAACCCTCTTTCAA
GCTGTGTTGGCAAGAATGACGACAGGCGTCCACACGTGTAGCGGTTGATT
TGCTGGCCATGGACACAAGACCGAACATCACGTTGAAGGTTGGATTTTGA
CGTGCACTATGACACGACAACTGCCCCAACTTACGTTTAGCCTATTCCTT
AGTTTTGAGTGAAGCCATGACCCTTCGTTTTTTATCTCTAGCGACAAAGT
TCAACGCGTGTTAGCACATCCATTTAATGTGAATAGCCAGAGACTTCAAC
GTACCAATTGGGTCACGTGACCCATTGGTATCCTGCTCACGTGACGCCCT
ACTCACAACGACTTCCTCTCCCTCTCCTAATCAAAACAGCTCGCTGTAGC
ACGAATGGACGAAGAAAACTTCAAGACCAGACTCGCACAGGAGACTGCCC
GACACGCCGAGCTCTCTCGGGGTCTAGAGCTAGCCTACACTAAAATGCTC
GGAGCAGGCCTCGATCCGGGAATTTCCGATCCACCGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14454:3374..4962+

>mRNA_H-paniculata_contig14454.2680.1 ID=mRNA_H-paniculata_contig14454.2680.1|Name=mRNA_H-paniculata_contig14454.2680.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig14454:3374..4962+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTTTTCGCAGAAGAAAAATAGAGCCGCTGCCGGTGGAGATCCAACT
TGGATCGAACTCGGTGCGTCTTACCCGAGATGGCTGGAAGCTCGATGGGT
TTTCGCAGAAGAAAAATAGAGCCGCTGCCGGTGGAGATCCAACTTGGATC
GAACTCGGTGCGTCTTACCCGAGATGGCTGGAAGCTCGACTCGACGGAAC
TCTCGAGGGTCCGGGTAGAATGCCGGCGTTTGGAGCAAGAGGCACTAGAG
CTGCGACGAGACCTAGAGGCCTGCCGAGCAGAGGCGAAAGACTCGACAGA
GCAAGCCAACATGGCTACGTTTCAGAATCAGCTGTTGCTTGATATGACTC
GACGGAACTCTCGAGGGTCCGGGTAGAATGCCGGCGTTTGGAGCAAGAGG
CACTAGAGCTGCGACGAGACCTAGAGGCCTGCCGAGCAGAGGCGAAAGAC
TCGACAGAGCAAGCCAACATGGCTACGTTTCAGAATCAGCTGTTGCTTGA
TATGCTCGCTGTAGCACGAATGGACGAAGAAAACTTCAAGACCAGACTCG
CACAGGAGACTGCCCGACACGCCGAGCTCTCTCGGGGTCTAGAGCTAGCC
TACACTAAAATGCTCGGAGCAGGCCTCGATCCGGGAATTTCCGATCCACC
GTAGCTCGCTGTAGCACGAATGGACGAAGAAAACTTCAAGACCAGACTCG
CACAGGAGACTGCCCGACACGCCGAGCTCTCTCGGGGTCTAGAGCTAGCC
TACACTAAAATGCTCGGAGCAGGCCTCGATCCGGGAATTTCCGATCCACC
GTAG
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