prot_H-paniculata_contig14337.2617.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig14337.2617.1
Unique Name	prot_H-paniculata_contig14337.2617.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	238

Homology

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BLAST of mRNA_H-paniculata_contig14337.2617.1 vs. uniprot
Match: D7FWT5_ECTSI (Geranylgeranyl pyrophosphate synthase, chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT5_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 1.680e-71
Identity = 126/180 (70.00%), Postives = 144/180 (80.00%), Query Frame = 0

Query:   55 TLRCSVTATDFDLKTYWGTRKIAVDDALDKAVVSTVPQTDSVSVALVVA---CIYLYVLYTILNESRVLVALRFLSCWMWESITPGTMRYSLLAGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRGMPTNHVKFGEDMAILAGDALLSKSFEHCAKV 231
            TLRC+  ATDFDLKTY GT+K +VD ALDKAVVST+PQTD   V+ V     CI  + L     E +  +AL      +W +++  ++ YSL+AGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRGMPT HVK+GED+AILAGDALLSKSFEHCAK+
Sbjct:   59 TLRCAAAATDFDLKTYLGTKKDSVDKALDKAVVSTMPQTDQDVVSGVPTDQKCIG-WCLLAWRTERKASLALGRGQRGVWTAVSRASIHYSLMAGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRGMPTCHVKYGEDIAILAGDALLSKSFEHCAKL 237

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BLAST of mRNA_H-paniculata_contig14337.2617.1 vs. uniprot
Match: A0A7S2FLB2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FLB2_9STRA)

HSP 1 Score: 163 bits (413), Expect = 2.940e-45
Identity = 78/104 (75.00%), Postives = 92/104 (88.46%), Query Frame = 0

Query:  127 SCWMWESITPGTMRYSLLAGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRGMPTNHVKFGEDMAILAGDALLSKSFEHCAK 230
            SC   + +T  +MRYSL+AGGKR+RPI+ IAACEMFGGS + AMPTAV+ EMIHTMSL+HDDLPAMDDDDLRRG+PTNHV +GED+AILAGDALLS +FEHCA+
Sbjct:   77 SCPQVKEVTE-SMRYSLMAGGKRIRPIMAIAACEMFGGSQDVAMPTAVAVEMIHTMSLVHDDLPAMDDDDLRRGVPTNHVVYGEDIAILAGDALLSTAFEHCAR 179

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BLAST of mRNA_H-paniculata_contig14337.2617.1 vs. uniprot
Match: A0A7S2RH45_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RH45_9STRA)

HSP 1 Score: 161 bits (408), Expect = 1.410e-44
Identity = 81/108 (75.00%), Postives = 92/108 (85.19%), Query Frame = 0

Query:  127 SCWMWESITPGTMRYSLLAGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRGMPTNHVKFGEDMAILAGDALLSKSFEHCAKVWRG 234
            +C   E IT  +MRYSLLAGGKRVRPI+ IAACEM GG+ E AMPTAV+ EMIHTMSL+HDDLP+MD+DDLRRG PTNHV FGED+AILAGDALLS +FEHCAK  +G
Sbjct:   71 TCPEVEKITE-SMRYSLLAGGKRVRPIMCIAACEMLGGTQEMAMPTAVAIEMIHTMSLVHDDLPSMDNDDLRRGKPTNHVLFGEDIAILAGDALLSTAFEHCAKYTKG 177

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BLAST of mRNA_H-paniculata_contig14337.2617.1 vs. uniprot
Match: A0A835ZD72_9STRA (Farnesyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD72_9STRA)

HSP 1 Score: 157 bits (396), Expect = 3.040e-43
Identity = 78/97 (80.41%), Postives = 87/97 (89.69%), Query Frame = 0

Query:  138 TMRYSLLAGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRGMPTNHVKFGEDMAILAGDALLSKSFEHCAKVWRG 234
            +M+YSL+AGGKRVRPIL IAACEMFGG+ E AMPTAV+ EMIH+MSLIHDDLPAMD+DDLRRG PTNHV +GE MAILAGDALLSKSFEH AK  +G
Sbjct:   39 SMKYSLMAGGKRVRPILCIAACEMFGGTDEDAMPTAVALEMIHSMSLIHDDLPAMDNDDLRRGKPTNHVVYGEAMAILAGDALLSKSFEHVAKFTKG 135

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BLAST of mRNA_H-paniculata_contig14337.2617.1 vs. uniprot
Match: F0Y0W2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0W2_AURAN)

HSP 1 Score: 157 bits (398), Expect = 5.560e-43
Identity = 76/92 (82.61%), Postives = 85/92 (92.39%), Query Frame = 0

Query:  138 TMRYSLLAGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRGMPTNHVKFGEDMAILAGDALLSKSFEHCA 229
            +MRYSLLAGGKRVRP++ IAACEMFGG+   AMPTAV+ EMIHTMSLIHDDLPAMD+DDLRRGMPTNHV +G+D+AILAGDALLS SFEHCA
Sbjct:   90 SMRYSLLAGGKRVRPVMCIAACEMFGGTEAMAMPTAVAIEMIHTMSLIHDDLPAMDNDDLRRGMPTNHVIYGDDVAILAGDALLSTSFEHCA 181

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BLAST of mRNA_H-paniculata_contig14337.2617.1 vs. uniprot
Match: A0A7S2A4A8_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A4A8_TRICV)

HSP 1 Score: 154 bits (388), Expect = 1.340e-42
Identity = 74/100 (74.00%), Postives = 88/100 (88.00%), Query Frame = 0

Query:  138 TMRYSLLAGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRGMPTNHVKFGEDMAILAGDALLSKSFEHCAKVWRGYTS 237
            +M YSL+AGGKR+RP+L +AACEMFGG+ E AMPTAV+ EMIHTMSLIHDDLP+MD+DDLRRG PTNHV +GED+AILAGDALLS SFEH A+  RG ++
Sbjct:   83 SMSYSLMAGGKRIRPVLCLAACEMFGGTEERAMPTAVALEMIHTMSLIHDDLPSMDNDDLRRGKPTNHVIYGEDVAILAGDALLSTSFEHVARNTRGVSA 182

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BLAST of mRNA_H-paniculata_contig14337.2617.1 vs. uniprot
Match: A0A7S3Q3N6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q3N6_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.730e-42
Identity = 78/112 (69.64%), Postives = 93/112 (83.04%), Query Frame = 0

Query:  132 ESITPGT------MRYSLLAGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRGMPTNHVKFGEDMAILAGDALLSKSFEHCAKVWRGYTS 237
            +S TP T      M YSL+AGGKR+RP+L IAACEMFGGS EAAMPTAV+ EMIHTMSLIHDDLP+MD+DDLRRG PTNH+ +GED+AILAGDALLS SF+H A+  +G ++
Sbjct:   70 KSTTPQTDKICESMDYSLMAGGKRIRPVLCIAACEMFGGSQEAAMPTAVALEMIHTMSLIHDDLPSMDNDDLRRGKPTNHIIYGEDVAILAGDALLSTSFQHVAEETKGVSA 181

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BLAST of mRNA_H-paniculata_contig14337.2617.1 vs. uniprot
Match: A0A7S2V1Y7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Y7_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.410e-42
Identity = 75/96 (78.12%), Postives = 87/96 (90.62%), Query Frame = 0

Query:  139 MRYSLLAGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRGMPTNHVKFGEDMAILAGDALLSKSFEHCAKVWRG 234
            MRYSLLAGGKR+RPILT+AACEMFGGS+E+AMPTAV+ EMIHTMSLIHDDLP+MD+DDLRRG PT HV +GED AILAGDA+LS SFE+ A+  +G
Sbjct:    1 MRYSLLAGGKRIRPILTLAACEMFGGSVESAMPTAVALEMIHTMSLIHDDLPSMDNDDLRRGRPTCHVVYGEDNAILAGDAMLSTSFEYVARHTKG 96

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BLAST of mRNA_H-paniculata_contig14337.2617.1 vs. uniprot
Match: B8BXV9_THAPS (Geranylgeranyl pyrophosphate synthetase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXV9_THAPS)

HSP 1 Score: 155 bits (392), Expect = 3.180e-42
Identity = 74/100 (74.00%), Postives = 88/100 (88.00%), Query Frame = 0

Query:  138 TMRYSLLAGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRGMPTNHVKFGEDMAILAGDALLSKSFEHCAKVWRGYTS 237
            +M YSL+AGGKR+RP+L IAACEMFGGS + AMPTAV+ EMIHTMSLIHDDLP+MD+DDLRRG PTNHV FGED+AILAGD+LLS SFEH A+  +G ++
Sbjct:   79 SMAYSLMAGGKRIRPVLCIAACEMFGGSQDVAMPTAVALEMIHTMSLIHDDLPSMDNDDLRRGKPTNHVVFGEDVAILAGDSLLSTSFEHVARETKGVSA 178

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BLAST of mRNA_H-paniculata_contig14337.2617.1 vs. uniprot
Match: A0A5J4YR58_PORPP (Geranylgeranyl diphosphate synthase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YR58_PORPP)

HSP 1 Score: 152 bits (383), Expect = 9.860e-41
Identity = 72/92 (78.26%), Postives = 84/92 (91.30%), Query Frame = 0

Query:  139 MRYSLLAGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRGMPTNHVKFGEDMAILAGDALLSKSFEHCAK 230
            MRYSL+AGGKR+RPIL +AACEM GG  E A+PTAV+ EMIHTMSLIHDDLP+MD+DDLRRGMPTNH+ FGED+AILAGDALL++SFE+ AK
Sbjct:   96 MRYSLMAGGKRIRPILVLAACEMCGGQEEVAIPTAVAIEMIHTMSLIHDDLPSMDNDDLRRGMPTNHIMFGEDIAILAGDALLARSFEYVAK 187

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig14337.2617.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig14337.2617.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWT5_ECTSI	1.680e-71	70.00	Geranylgeranyl pyrophosphate synthase, chloroplast...	[more]
A0A7S2FLB2_9STRA	2.940e-45	75.00	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A7S2RH45_9STRA	1.410e-44	75.00	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A835ZD72_9STRA	3.040e-43	80.41	Farnesyltransferase n=1 Tax=Tribonema minus TaxID=...	[more]
F0Y0W2_AURAN	5.560e-43	82.61	Uncharacterized protein n=1 Tax=Aureococcus anopha...	[more]
A0A7S2A4A8_TRICV	1.340e-42	74.00	Hypothetical protein (Fragment) n=1 Tax=Trieres ch...	[more]
A0A7S3Q3N6_9STRA	1.730e-42	69.64	Hypothetical protein n=1 Tax=Chaetoceros debilis T...	[more]
A0A7S2V1Y7_9STRA	2.410e-42	78.13	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
B8BXV9_THAPS	3.180e-42	74.00	Geranylgeranyl pyrophosphate synthetase n=1 Tax=Th...	[more]
A0A5J4YR58_PORPP	9.860e-41	78.26	Geranylgeranyl diphosphate synthase n=1 Tax=Porphy...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	1.10.600.10		coord: 131..236 e-value: 1.3E-45 score: 157.7
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	48576	Terpenoid synthases	coord: 132..232
IPR000092	Polyprenyl synthetase	PFAM	PF00348	polyprenyl_synt	coord: 139..231 e-value: 6.5E-26 score: 90.9
None	No IPR available	PANTHER	PTHR43281:SF1	GERANYLGERANYL PYROPHOSPHATE SYNTHASE 7, CHLOROPLASTIC	coord: 137..230
None	No IPR available	PANTHER	PTHR43281	FAMILY NOT NAMED	coord: 137..230
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 20..95
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..19
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..14
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 96..114
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 115..237
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..19
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..19 score: 0.681
IPR033749	Polyprenyl synthetase, conserved site	PROSITE	PS00723	POLYPRENYL_SYNTHASE_1	coord: 184..200

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig14337	contig	H-paniculata_contig14337:2508..5751 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig14337.2617.1	mRNA_H-paniculata_contig14337.2617.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig14337 2508..5751 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig14337.2617.1 ID=prot_H-paniculata_contig14337.2617.1|Name=mRNA_H-paniculata_contig14337.2617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=238bp
MKSVAALAVATCLSSPATAFVVAPPPARATSGSSFVGATDSAWARARPSM
PAVSTLRCSVTATDFDLKTYWGTRKIAVDDALDKAVVSTVPQTDSVSVAL
VVACIYLYVLYTILNESRVLVALRFLSCWMWESITPGTMRYSLLAGGKRV
RPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRG
MPTNHVKFGEDMAILAGDALLSKSFEHCAKVWRGYTS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008949	Isoprenoid_synthase_dom_sf
IPR000092	Polyprenyl_synt
IPR033749	Polyprenyl_synt_CS