mRNA_H-paniculata_contig14247.2575.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14247.2575.1
Unique NamemRNA_H-paniculata_contig14247.2575.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14247.2575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14247contigH-paniculata_contig14247:2909..4547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size686
Cds size468
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14247.2575.1prot_H-paniculata_contig14247.2575.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14247 3127..4547 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929134.060193-UTR-H-paniculata_contig14247:2908..31261622929134.060193-UTR-H-paniculata_contig14247:2908..3126Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14247 2909..3126 +
1691480744.1442027-UTR-H-paniculata_contig14247:2908..31261691480744.1442027-UTR-H-paniculata_contig14247:2908..3126Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14247 2909..3126 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929134.0780697-CDS-H-paniculata_contig14247:3126..32611622929134.0780697-CDS-H-paniculata_contig14247:3126..3261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14247 3127..3261 +
1691480744.1573668-CDS-H-paniculata_contig14247:3126..32611691480744.1573668-CDS-H-paniculata_contig14247:3126..3261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14247 3127..3261 +
1622929134.1871524-CDS-H-paniculata_contig14247:4214..45471622929134.1871524-CDS-H-paniculata_contig14247:4214..4547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14247 4215..4547 +
1691480744.1745312-CDS-H-paniculata_contig14247:4214..45471691480744.1745312-CDS-H-paniculata_contig14247:4214..4547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14247 4215..4547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14247.2575.1

>prot_H-paniculata_contig14247.2575.1 ID=prot_H-paniculata_contig14247.2575.1|Name=mRNA_H-paniculata_contig14247.2575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
MEEHGMRGGGSVGGGADHGFRDNLARQSPSIGDLQDPQHEDQQNTLIEQQ
RYQMAFQIHQQQQHQRQPQQQQATSPHQRHGAFPPPPPPPLQAAQQEGNQ
LPSLPQGSTLQQLYMQQQVQQRAQQKLTESHLQQAKFAAAKQHQQQQSKK
PSTPAQ
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mRNA from alignment at H-paniculata_contig14247:2909..4547+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14247.2575.1 ID=mRNA_H-paniculata_contig14247.2575.1|Name=mRNA_H-paniculata_contig14247.2575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1639bp|location=Sequence derived from alignment at H-paniculata_contig14247:2909..4547+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCAGCGAGTGGGGACGGCGGGGACTGTGCAAAGCAGGAGGCTCTGGAGA
TATATTTATCTCACCAAGAATGCAGGCACATAGCAAGGTCTGGTTCTGCC
ATTGTCCCCCGTAAAAGAGATATCGGGCCTCCAAAAGTCGATAGTTGTGT
TCGCACAAAGTACTGAACCGTTGTACCGACTGTTTTGAGAGCACCAACAC
GTTTGAGTTGCAAGTGCAATGGAGGAACACGGCATGAGAGGCGGCGGCAG
TGTTGGCGGCGGTGCCGACCATGGTTTCCGAGACAACTTGGCACGGCAAT
CTCCTTCCATCGGCGATCTCCAGGACCCGCAGCACGAGGACCAACAGAAC
ACGGTGCGCCTAACTAGTTTGTGTTGTTACCAGGACTTTTAAAAATCAAA
ATGGCGCCCCAGCAACGCAAGTAAGTCTTGTGCCAAAAATAGTTACTCCA
TGCACACCTGATCCTGTCAGTAATGCGTGTAAAATAGATGTGCAGCCGTC
AAGACGGCGCTGCCGCAGAGTAATGTGATCATCCCGTGATGCCTGGGTGT
GCCATCGGGAGCATAAATTCTACTGTGGAGGCTAAATATGCGGAATGTAT
TCCCCCTCATGTTCTGTCTCAATGTATCTTGCTAAGGGGTATTCTATATT
CTAGCAAACCGATATTTGAAAATATAAAATAAACATTGAAACATACTCGA
CACTGTACCTCTTCAACAACAGGGAGAGCGATACGTTTTGAATATAGCAC
AATATAATATGGGTCCTACTCGCGGGGAGCGGGGGTGTGTCGTTCTACCT
CGCACGAGGAAGACTTAATCTATTTAGCTTCACGGAGCGTGGGACGCGTC
TCGTATCGACAGGGTTTTGTCTCGTCGGAAGCAAGCCAGACCGAAGCGTA
TGACAATAACCCAGATGCGTTGGAACTATCCCAAAAAGACGAGGCAGTTA
TCATACAGAATGAGGCGTGCTGGATATAGCGGGGGCTATCTATTCCAACA
ATTTGAATTCATTTCGTAGACTGGCAGCCTGTCGAGGATGTAAGCGAAAG
CGTAGACCTGATTTATAGCGTCGATCCCCTGACTACCGCAGTAGATGTTA
ATGCCTTTCACTCGTATATCCTGCCGAGTTTGAAGAATCCACGCCGCCGT
GCATGTTTAGGGCGTCCCGCGGTAGGAGGCTCCAACACATGTGGTATCTG
GCGTTGTTTCGACTTACCTGGCACCCTGGAACCCAGGAAAGCTTTCGTTT
GAATTCTCTCCGTTCTGCTCTCTGTTTGTGTTTGCCCTTCTCGCGCTTTC
CGAAAGCTCATCGAGCAGCAGCGATACCAGATGGCGTTCCAGATTCATCA
ACAGCAGCAGCATCAGAGGCAGCCACAGCAGCAGCAAGCGACTTCACCAC
ACCAACGGCATGGCGCATTCCCTCCTCCTCCGCCGCCCCCTCTTCAAGCG
GCGCAGCAGGAGGGTAACCAGCTTCCGAGCCTGCCACAGGGTAGCACCTT
GCAGCAGCTGTACATGCAACAGCAGGTGCAGCAAAGGGCACAGCAGAAGC
TGACGGAGTCGCACCTCCAGCAGGCGAAATTTGCGGCAGCCAAGCAGCAT
CAACAACAACAATCAAAGAAACCGTCCACGCCGGCCCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig14247:2909..4547+

>mRNA_H-paniculata_contig14247.2575.1 ID=mRNA_H-paniculata_contig14247.2575.1|Name=mRNA_H-paniculata_contig14247.2575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig14247:2909..4547+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAACACGGCATGAGAGGCGGCGGCAGTGTTGGCGGCGGTGCCGA
CCATGGTTTCCGAGACAACTTGGCACGGCAATCTCCTTCCATCGGCGATC
TCCAGGACCCGCAGCACGAGGACCAACAGAACACGATGGAGGAACACGGC
ATGAGAGGCGGCGGCAGTGTTGGCGGCGGTGCCGACCATGGTTTCCGAGA
CAACTTGGCACGGCAATCTCCTTCCATCGGCGATCTCCAGGACCCGCAGC
ACGAGGACCAACAGAACACGCTCATCGAGCAGCAGCGATACCAGATGGCG
TTCCAGATTCATCAACAGCAGCAGCATCAGAGGCAGCCACAGCAGCAGCA
AGCGACTTCACCACACCAACGGCATGGCGCATTCCCTCCTCCTCCGCCGC
CCCCTCTTCAAGCGGCGCAGCAGGAGGGTAACCAGCTTCCGAGCCTGCCA
CAGGGTAGCACCTTGCAGCAGCTGTACATGCAACAGCAGGTGCAGCAAAG
GGCACAGCAGAAGCTGACGGAGTCGCACCTCCAGCAGGCGAAATTTGCGG
CAGCCAAGCAGCATCAACAACAACAATCAAAGAAACCGTCCACGCCGGCC
CAACTCATCGAGCAGCAGCGATACCAGATGGCGTTCCAGATTCATCAACA
GCAGCAGCATCAGAGGCAGCCACAGCAGCAGCAAGCGACTTCACCACACC
AACGGCATGGCGCATTCCCTCCTCCTCCGCCGCCCCCTCTTCAAGCGGCG
CAGCAGGAGGGTAACCAGCTTCCGAGCCTGCCACAGGGTAGCACCTTGCA
GCAGCTGTACATGCAACAGCAGGTGCAGCAAAGGGCACAGCAGAAGCTGA
CGGAGTCGCACCTCCAGCAGGCGAAATTTGCGGCAGCCAAGCAGCATCAA
CAACAACAATCAAAGAAACCGTCCACGCCGGCCCAA
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