mRNA_H-paniculata_contig14236.2570.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14236.2570.1
Unique NamemRNA_H-paniculata_contig14236.2570.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14236.2570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14236contigH-paniculata_contig14236:2623..3105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size218
Cds size120
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14236.2570.1prot_H-paniculata_contig14236.2570.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14236 2623..3007 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929133.1990533-CDS-H-paniculata_contig14236:2622..27211622929133.1990533-CDS-H-paniculata_contig14236:2622..2721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14236 2623..2721 +
1691480743.8017163-CDS-H-paniculata_contig14236:2622..27211691480743.8017163-CDS-H-paniculata_contig14236:2622..2721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14236 2623..2721 +
1622929133.2150295-CDS-H-paniculata_contig14236:2986..30071622929133.2150295-CDS-H-paniculata_contig14236:2986..3007Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14236 2987..3007 +
1691480743.8128877-CDS-H-paniculata_contig14236:2986..30071691480743.8128877-CDS-H-paniculata_contig14236:2986..3007Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14236 2987..3007 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929133.230377-UTR-H-paniculata_contig14236:3007..31051622929133.230377-UTR-H-paniculata_contig14236:3007..3105Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14236 3008..3105 +
1691480743.829633-UTR-H-paniculata_contig14236:3007..31051691480743.829633-UTR-H-paniculata_contig14236:3007..3105Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14236 3008..3105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14236.2570.1

>prot_H-paniculata_contig14236.2570.1 ID=prot_H-paniculata_contig14236.2570.1|Name=mRNA_H-paniculata_contig14236.2570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=40bp
FSDCSHQVEIGYITSGVQQQGLRRVRVTTSTISAYKTAC*
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mRNA from alignment at H-paniculata_contig14236:2623..3105+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14236.2570.1 ID=mRNA_H-paniculata_contig14236.2570.1|Name=mRNA_H-paniculata_contig14236.2570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=483bp|location=Sequence derived from alignment at H-paniculata_contig14236:2623..3105+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCAGTGATTGCTCTCATCAGGTTGAGATCGGGTACATAACAAGTGGGGT
GCAACAACAAGGTCTACGAAGGGTGCGAGTCACGACATCAACAATATCGG
TGCGGGCCTTATCTTAGCCAGCCCCTCGATGCTGCGCGTATCAAGTTCTG
TTTGACCGCTGGCCTCTACCATGCGCATATATTTTGTCCTGTGTGATCCT
TGTGCTGAAGGTATATACTGTATCATGCTGGTGCTGTAGTTGATACACTA
TGGTTATGCCAGTGGCGACGACTCATCACGCGAACTCGATGCACCTGTCG
TGGTTCACTTACGCCTGAATATAGTCACAAGCAACATTCAAGCCGATGCT
CATTTCGGCCTCAGGCATATAAAACGGCATGTTGACCTGACCCAACATAT
CATCAAGCAAGATTGGGCATCGGGTGTACGACAAAGCGAGTTGCAACAGC
AAGGCCTTCGAAGGGCGTAAGCTACGTCATGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14236:2623..3105+

>mRNA_H-paniculata_contig14236.2570.1 ID=mRNA_H-paniculata_contig14236.2570.1|Name=mRNA_H-paniculata_contig14236.2570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=240bp|location=Sequence derived from alignment at H-paniculata_contig14236:2623..3105+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCAGTGATTGCTCTCATCAGGTTGAGATCGGGTACATAACAAGTGGGGT
GCAACAACAAGGTCTACGAAGGGTGCGAGTCACGACATCAACAATATCGT
TCAGTGATTGCTCTCATCAGGTTGAGATCGGGTACATAACAAGTGGGGTG
CAACAACAAGGTCTACGAAGGGTGCGAGTCACGACATCAACAATATCGGC
ATATAAAACGGCATGTTGAGCATATAAAACGGCATGTTGA
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