mRNA_H-paniculata_contig14227.2567.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14227.2567.1
Unique NamemRNA_H-paniculata_contig14227.2567.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14227.2567.1 vs. uniprot
Match: A0A6H5JES4_9PHAE (Misat_Tub_SegII domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JES4_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 6.220e-21
Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 KIGRYANFVGTHFWNFEDELLLLGSKGGVVDEYYNHGVLHR-APA-SEGGA------RTPRLVAFDTR 180
            ++GRYANFVGTHFWNF+DELLLL S+GGVVD  Y HGVLHR AP  S GG       RTPRLVAFDTR
Sbjct:   13 QVGRYANFVGTHFWNFQDELLLLASRGGVVDASYEHGVLHRQAPERSRGGGGGASVERTPRLVAFDTR 80          
BLAST of mRNA_H-paniculata_contig14227.2567.1 vs. uniprot
Match: UPI0006A7349F (uncharacterized protein LOC106328727 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A7349F)

HSP 1 Score: 57.4 bits (137), Expect = 1.610e-8
Identity = 30/84 (35.71%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    1 KIGRYANFVGTHFWNFEDELLLLGSKGGVVDEYYNHG----VLHRAPASEGGART--PRLVAFDTRQGKPGKSTSILLYFVRSK 234
            ++G +ANF+G+HFWNF+DELL L S       + NH     VL+R+  ++ G  T  PRL++ +       + +S++L F+ S+
Sbjct:    9 QVGEFANFIGSHFWNFQDELLALASDPESDPIFPNHNLDMDVLYRSGENQQGVSTYTPRLLSVNFEVATRWRPSSVILPFLESR 92          
BLAST of mRNA_H-paniculata_contig14227.2567.1 vs. uniprot
Match: A0A835Z5A4_9STRA (Tubulin/FtsZ, GTPase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5A4_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.450e-8
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 KIGRYANFVGTHFWNFEDELL--LLGSKGGVVDEYYNHGVLHRAPASEGGARTPRLVAFDTR 180
            +IGRYANFVGTH+WNF+DEL        GG + + Y+  V+    +S G   TPRL+ FDTR
Sbjct:   27 QIGRYANFVGTHYWNFQDELWGWAQDQPGGTLLDPYDPAVMF---SSAGRVVTPRLLIFDTR 85          
BLAST of mRNA_H-paniculata_contig14227.2567.1 vs. uniprot
Match: A0A1U7V4B8_NICSY (protein misato homolog 1-like n=1 Tax=Nicotiana sylvestris TaxID=4096 RepID=A0A1U7V4B8_NICSY)

HSP 1 Score: 58.5 bits (140), Expect = 3.040e-8
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:    1 KIGRYANFVGTHFWNFEDELLLLGSKGGVVDEYYNHG----VLHRAPASEGGART--PRLVAFDTRQGKPGKSTS 207
            ++G YANF+G+HFWNF+DELL L    G    + NHG    VL+R   ++ G  T  PR+V+ +  QG  G  +S
Sbjct:    8 QVGNYANFIGSHFWNFQDELLGLAESPGTDQVFRNHGLDMDVLYRTGETQQGVLTYTPRMVSVNF-QGSLGSLSS 81          
BLAST of mRNA_H-paniculata_contig14227.2567.1 vs. uniprot
Match: A0A1S4A7C6_TOBAC (protein misato homolog 1-like n=5 Tax=Nicotiana TaxID=4085 RepID=A0A1S4A7C6_TOBAC)

HSP 1 Score: 58.5 bits (140), Expect = 3.330e-8
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:    1 KIGRYANFVGTHFWNFEDELLLLGSKGGVVDEYYNHG----VLHRAPASEGGART--PRLVAFDTRQGKPGKSTS 207
            ++G YANF+G+HFWNF+DELL L    G    + NHG    VL+R   ++ G  T  PR+V+ +  QG  G  +S
Sbjct:    8 QVGNYANFIGSHFWNFQDELLGLAESPGTDQVFRNHGLDMDVLYRTGETQQGVLTYTPRMVSVNF-QGSLGSLSS 81          
BLAST of mRNA_H-paniculata_contig14227.2567.1 vs. uniprot
Match: A0A6P6W111_COFAR (protein misato homolog 1-like n=4 Tax=Coffea TaxID=13442 RepID=A0A6P6W111_COFAR)

HSP 1 Score: 58.2 bits (139), Expect = 4.560e-8
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    1 KIGRYANFVGTHFWNFEDELLLLGSKGGVVDEYYNHG----VLHRAPASEGG--ARTPRLVAFDTRQGKPGKSTS 207
            ++G YANF+G+HFWNF+DELL L         + NHG    VL+R   ++ G    TPRLV+ D  QG  G  +S
Sbjct:    8 QVGGYANFIGSHFWNFQDELLGLAETSETNPAFKNHGLNMDVLYRTGETQQGILTYTPRLVSVDF-QGSLGSMSS 81          
BLAST of mRNA_H-paniculata_contig14227.2567.1 vs. uniprot
Match: A0A1R3GF86_COCAP (Uncharacterized protein n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3GF86_COCAP)

HSP 1 Score: 57.0 bits (136), Expect = 1.160e-7
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    1 KIGRYANFVGTHFWNFEDELLLLGSKGGVV--DEYYNHGVLHRAPASEGGART--PRLVAFDTRQGKPGKSTS 207
            ++G +ANF+G+HFWNF+DE+L L S G  +   E  N  VL+R   S  G RT  PRL++ D  QG  G  +S
Sbjct:    8 QVGGFANFIGSHFWNFQDEMLGLDSYGDPLFKTESLNMDVLYRTGESPQGTRTYTPRLLSIDF-QGSLGSMSS 79          
BLAST of mRNA_H-paniculata_contig14227.2567.1 vs. uniprot
Match: S8C7Y2_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8C7Y2_9LAMI)

HSP 1 Score: 56.6 bits (135), Expect = 1.590e-7
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 1
Query:    1 KIGRYANFVGTHFWNFEDELLLLGSKGGVVDEYYNHG----VLHRAPASEGG--ARTPRLVAFD 174
            ++G YANFVG+HFWNF+DELL L       D + NHG    VL+R   ++ G    TPRLV+ D
Sbjct:    8 QVGSYANFVGSHFWNFQDELLGLAESD---DNFKNHGLNMDVLYRTGETQQGILTYTPRLVSVD 68          
BLAST of mRNA_H-paniculata_contig14227.2567.1 vs. uniprot
Match: A0A2P2LQU1_RHIMU (Uncharacterized protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2LQU1_RHIMU)

HSP 1 Score: 55.8 bits (133), Expect = 2.690e-7
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    1 KIGRYANFVGTHFWNFEDELLLLGSKGGVVD-------EYYNHGVLHRAPASEGG--ARTPRLVAFDTRQGKPGKSTS 207
            ++G YANFVG+HFWNF+DELL L ++G   D       +Y N  VL+RA  ++ G    TPRL++ D  QG  G  +S
Sbjct:    8 QVGGYANFVGSHFWNFQDELLGL-AEGPDSDPVFKNHQDYLNMDVLYRAGETQQGILTYTPRLLSID-HQGSLGSVSS 83          
BLAST of mRNA_H-paniculata_contig14227.2567.1 vs. uniprot
Match: A0A2C9UA69_MANES (Uncharacterized protein n=2 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9UA69_MANES)

HSP 1 Score: 55.8 bits (133), Expect = 2.970e-7
Identity = 32/77 (41.56%), Postives = 47/77 (61.04%), Query Frame = 1
Query:    1 KIGRYANFVGTHFWNFEDELLLLGSKGGVVDEYYNH------GVLHRAPASEGGART--PRLVAFDTRQGKPGKSTS 207
            ++G +ANF+G+HFWNF+DELL LG+  G    + NH       VL+R   ++ G  T  PRLV+ ++ QG  G  +S
Sbjct:    8 QVGGFANFIGSHFWNFQDELLGLGADHGSDTVFRNHHQFLNMDVLYRNGETQQGVLTYTPRLVSINS-QGSLGSMSS 83          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14227.2567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JES4_9PHAE6.220e-2172.06Misat_Tub_SegII domain-containing protein n=2 Tax=... [more]
UPI0006A7349F1.610e-835.71uncharacterized protein LOC106328727 n=1 Tax=Brass... [more]
A0A835Z5A4_9STRA2.450e-850.00Tubulin/FtsZ, GTPase domain-containing protein n=1... [more]
A0A1U7V4B8_NICSY3.040e-842.67protein misato homolog 1-like n=1 Tax=Nicotiana sy... [more]
A0A1S4A7C6_TOBAC3.330e-842.67protein misato homolog 1-like n=5 Tax=Nicotiana Ta... [more]
A0A6P6W111_COFAR4.560e-844.00protein misato homolog 1-like n=4 Tax=Coffea TaxID... [more]
A0A1R3GF86_COCAP1.160e-745.21Uncharacterized protein n=2 Tax=Corchorus TaxID=93... [more]
S8C7Y2_9LAMI1.590e-748.44Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]
A0A2P2LQU1_RHIMU2.690e-744.87Uncharacterized protein n=1 Tax=Rhizophora mucrona... [more]
A0A2C9UA69_MANES2.970e-741.56Uncharacterized protein n=2 Tax=Manihot esculenta ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14227contigH-paniculata_contig14227:1296..1529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue6.8e-18
Seed eggNOG ortholog2880.D7FL30
Preferred nameMSTO1
KEGG rclassRC00443
KEGG koko:K01679,ko:K12396,ko:K17408
KEGG ReactionR01082
KEGG Pathwayko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04142,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04142,map04934,map05200,map05211
KEGG ModuleM00009,M00011,M00173,M00376
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000070,GO:0000226,GO:0000278,GO:0000280,GO:0000819,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005856,GO:0006276,GO:0006996,GO:0007005,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0008150,GO:0009987,GO:0016020,GO:0016043,GO:0019867,GO:0022402,GO:0022607,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048285,GO:0048311,GO:0051179,GO:0051225,GO:0051276,GO:0051640,GO:0051641,GO:0051646,GO:0070925,GO:0071840,GO:0090307,GO:0098588,GO:0098805,GO:0098813,GO:0140014,GO:1902850,GO:1903047
EggNOG free text desc.mitochondrion organization
EggNOG OGsKOG2530@1,KOG2530@2759
EC4.2.1.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03029,ko04131
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929132.7491992-CDS-H-paniculata_contig14227:1295..15291622929132.7491992-CDS-H-paniculata_contig14227:1295..1529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14227 1296..1529 +
1691480743.5854466-CDS-H-paniculata_contig14227:1295..15291691480743.5854466-CDS-H-paniculata_contig14227:1295..1529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14227 1296..1529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14227.2567.1prot_H-paniculata_contig14227.2567.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14227 1296..1529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14227.2567.1

>prot_H-paniculata_contig14227.2567.1 ID=prot_H-paniculata_contig14227.2567.1|Name=mRNA_H-paniculata_contig14227.2567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
KIGRYANFVGTHFWNFEDELLLLGSKGGVVDEYYNHGVLHRAPASEGGAR
TPRLVAFDTRQGKPGKSTSILLYFVRSK
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mRNA from alignment at H-paniculata_contig14227:1296..1529+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14227.2567.1 ID=mRNA_H-paniculata_contig14227.2567.1|Name=mRNA_H-paniculata_contig14227.2567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=234bp|location=Sequence derived from alignment at H-paniculata_contig14227:1296..1529+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGATTGGAAGATACGCCAATTTTGTGGGGACGCACTTCTGGAACTTCGA GGACGAGCTGTTGCTGTTGGGGAGCAAGGGGGGAGTGGTGGACGAGTACT ATAACCATGGCGTGCTGCACAGAGCACCTGCGTCGGAAGGCGGTGCCCGC ACTCCTCGCTTGGTCGCGTTTGATACGAGGCAAGGCAAGCCAGGGAAGAG CACCTCTATTCTGCTCTATTTTGTACGGAGTAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig14227:1296..1529+

>mRNA_H-paniculata_contig14227.2567.1 ID=mRNA_H-paniculata_contig14227.2567.1|Name=mRNA_H-paniculata_contig14227.2567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig14227:1296..1529+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGATTGGAAGATACGCCAATTTTGTGGGGACGCACTTCTGGAACTTCGA
GGACGAGCTGTTGCTGTTGGGGAGCAAGGGGGGAGTGGTGGACGAGTACT
ATAACCATGGCGTGCTGCACAGAGCACCTGCGTCGGAAGGCGGTGCCCGC
ACTCCTCGCTTGGTCGCGTTTGATACGAGGCAAGGCAAGCCAGGGAAGAG
CACCTCTATTCTGCTCTATTTTGTACGGAGTAAAAAGATTGGAAGATACG
CCAATTTTGTGGGGACGCACTTCTGGAACTTCGAGGACGAGCTGTTGCTG
TTGGGGAGCAAGGGGGGAGTGGTGGACGAGTACTATAACCATGGCGTGCT
GCACAGAGCACCTGCGTCGGAAGGCGGTGCCCGCACTCCTCGCTTGGTCG
CGTTTGATACGAGGCAAGGCAAGCCAGGGAAGAGCACCTCTATTCTGCTC
TATTTTGTACGGAGTAAA
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