mRNA_H-paniculata_contig14224.2566.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14224.2566.1
Unique NamemRNA_H-paniculata_contig14224.2566.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14224.2566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14224contigH-paniculata_contig14224:3839..5227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1161
Cds size849
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14224.2566.1prot_H-paniculata_contig14224.2566.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14224 4147..5223 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929132.5819616-UTR-H-paniculata_contig14224:3838..41461622929132.5819616-UTR-H-paniculata_contig14224:3838..4146Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14224 3839..4146 -
1691480743.485366-UTR-H-paniculata_contig14224:3838..41461691480743.485366-UTR-H-paniculata_contig14224:3838..4146Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14224 3839..4146 -
1622929132.6233273-UTR-H-paniculata_contig14224:5223..52271622929132.6233273-UTR-H-paniculata_contig14224:5223..5227Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14224 5224..5227 -
1691480743.5230155-UTR-H-paniculata_contig14224:5223..52271691480743.5230155-UTR-H-paniculata_contig14224:5223..5227Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14224 5224..5227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929132.593114-CDS-H-paniculata_contig14224:4146..46591622929132.593114-CDS-H-paniculata_contig14224:4146..4659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14224 4147..4659 -
1691480743.5029635-CDS-H-paniculata_contig14224:4146..46591691480743.5029635-CDS-H-paniculata_contig14224:4146..4659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14224 4147..4659 -
1622929132.6121967-CDS-H-paniculata_contig14224:4887..52231622929132.6121967-CDS-H-paniculata_contig14224:4887..5223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14224 4888..5223 -
1691480743.5137336-CDS-H-paniculata_contig14224:4887..52231691480743.5137336-CDS-H-paniculata_contig14224:4887..5223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14224 4888..5223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14224.2566.1

>prot_H-paniculata_contig14224.2566.1 ID=prot_H-paniculata_contig14224.2566.1|Name=mRNA_H-paniculata_contig14224.2566.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=283bp
MCARHADHGMVSVVNKKCSHQGCSTRVSYGAAGTRKAEMCAQHADNGMVD
VVNKKCSHQGCSTLPSYGAAGTRKAEMCARYADHGMVDVVNKKCSHQGCS
TLPSYGAAGTRKAEMCARHADNGMVSVNKKCSHQGCSTRASYGAAGTRKA
EMCARHADHGMVNAKESKSTSRGGRLKKPFSPLQVKLEVASEDVDGHGCS
AIVETGRKRHPALTVPSHSGSTTSRESRSAKRARMSGRLSIAEQLAPRTP
AAGMSSLHNGAILKTEVLALWRSVPDPVLHQH*
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mRNA from alignment at H-paniculata_contig14224:3839..5227-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14224.2566.1 ID=mRNA_H-paniculata_contig14224.2566.1|Name=mRNA_H-paniculata_contig14224.2566.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1389bp|location=Sequence derived from alignment at H-paniculata_contig14224:3839..5227- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGATGTGTGCGCGGCATGCCGACCACGGGATGGTTAGCGTGGTGAACA
AGAAGTGCTCCCACCAGGGCTGCTCCACACGTGTGTCGTATGGGGCAGCG
GGCACGAGAAAGGCAGAGATGTGTGCGCAGCATGCCGACAACGGGATGGT
GGACGTGGTGAACAAGAAGTGCTCCCACCAGGGCTGCTCCACACTTCCAT
CGTATGGGGCGGCGGGCACGAGAAAGGCAGAGATGTGTGCGCGGTATGCC
GATCACGGGATGGTGGACGTGGTGAACAAGAAGTGCTCCCACCAGGGCTG
CTCTACACTTCCGTCGTATGGGGCGGCGGGCACGAGAAAGGCAGAGATGT
GTGCGCGGTATGCCAATCACGGGATGGTTAGCGTGCTGAACAAGAAGTGC
TCCCACCAGGGCTGCTCTACACTTTCGTCGTATGGGGCGGCGGGCACGAG
GAAGGCAGAGATGTGTGCGCGGCATGCCGACCACGGGATGGTTAGCATGG
TGAACAAGAAGTGCTCCCACCAGGGCTGCTCTACACTTCCGTCGTATGGG
GCGGCGGGCACGAGGAAGGCAGAGATGTGTGCGCGGCATGCCGACAACGG
GATGGTTAGCGTGAACAAGAAGTGCTCCCACCAGGGCTGTTCTACACGTG
CGTCGTATGGGGCGGCGGGCACGAGAAAGGCAGAGATGTGTGCGCGGCAT
GCCGACCACGGGATGGTTAACGCGAAAGAGAGCAAGAGCACCAGCCGCGG
CGGTCGTTTGAAGAAACCGTTTAGTCCCTTGCAGGTTAAGCTCGAAGTAG
CTTCCGAGGACGTTGATGGTCATGGATGTTCCGCGATTGTGGAGACAGGC
AGAAAGCGCCACCCCGCACTAACGGTTCCATCGCACAGCGGTAGCACTAC
CTCGCGGGAGAGTCGCAGCGCAAAGCGGGCTCGCATGTCCGGTAGGTTGA
GCATCGCAGAGCAGCTAGCCCCCCGCACGCCTGCGGCAGGCATGTCATCT
CTCCACAATGGGGCTATTCTGAAGACGGAGGTGCTTGCATTGTGGCGTTC
TGTGCCGGATCCCGTTTTACACCAGCACTGACTGCTGTTGGTCGTGGAGG
CATCGAGTGTGAGGCGTGTGCCGAGGCACGAGAGTGGTTGGAAGTGATGC
AGTCATTGTTAGTGTTCAGATATAATAGTAGAGATATGACTCGCGCAGCA
GACTGTACAACCCGCATTGATTTTCGGTGTCCAGGAGCTGCTTCTACGTC
GGTCCGAGCATGAACTATCCGCGAGATTTCTTACGGATCCTTACGCCGGA
AGCAATGGGGTCAAGACGAGACATGTCACCTGGGCGGCGCCAGCTACTAC
GCTACCACCGGTACGGTTGCCTGCGGTACAGGAGGCGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig14224:3839..5227-

>mRNA_H-paniculata_contig14224.2566.1 ID=mRNA_H-paniculata_contig14224.2566.1|Name=mRNA_H-paniculata_contig14224.2566.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1698bp|location=Sequence derived from alignment at H-paniculata_contig14224:3839..5227- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTGCGCGGCATGCCGACCACGGGATGGTTAGCGTGGTGAACAAGAA
GTGCTCCCACCAGGGCTGCTCCACACGTGTGTCGTATGGGGCAGCGGGCA
CGAGAAAGGCAGAGATGTGTGCGCAGCATGCCGACAACGGGATGGTGGAC
GTGGTGAACAAGAAGTGCTCCCACCAGGGCTGCTCCACACTTCCATCGTA
TGGGGCGGCGGGCACGAGAAAGGCAGAGATGTGTGCGCGGTATGCCGATC
ACGGGATGGTGGACGTGGTGAACAAGAAGTGCTCCCACCAGGGCTGCTCT
ACACTTCCGTCGTATGGGGCGGCGGGCACGAGAAAGATGTGTGCGCGGCA
TGCCGACCACGGGATGGTTAGCGTGGTGAACAAGAAGTGCTCCCACCAGG
GCTGCTCCACACGTGTGTCGTATGGGGCAGCGGGCACGAGAAAGGCAGAG
ATGTGTGCGCAGCATGCCGACAACGGGATGGTGGACGTGGTGAACAAGAA
GTGCTCCCACCAGGGCTGCTCCACACTTCCATCGTATGGGGCGGCGGGCA
CGAGAAAGGCAGAGATGTGTGCGCGGTATGCCGATCACGGGATGGTGGAC
GTGGTGAACAAGAAGTGCTCCCACCAGGGCTGCTCTACACTTCCGTCGTA
TGGGGCGGCGGGCACGAGAAAGGCAGAGATGTGTGCGCGGCATGCCGACA
ACGGGATGGTTAGCGTGAACAAGAAGTGCTCCCACCAGGGCTGTTCTACA
CGTGCGTCGTATGGGGCGGCGGGCACGAGAAAGGCAGAGATGTGTGCGCG
GCATGCCGACCACGGGATGGTTAACGCGAAAGAGAGCAAGAGCACCAGCC
GCGGCGGTCGTTTGAAGAAACCGTTTAGTCCCTTGCAGGTTAAGCTCGAA
GTAGCTTCCGAGGACGTTGATGGTCATGGATGTTCCGCGATTGTGGAGAC
AGGCAGAAAGCGCCACCCCGCACTAACGGTTCCATCGCACAGCGGTAGCA
CTACCTCGCGGGAGAGTCGCAGCGCAAAGCGGGCTCGCATGTCCGGTAGG
TTGAGCATCGCAGAGCAGCTAGCCCCCCGCACGCCTGCGGCAGGCATGTC
ATCTCTCCACAATGGGGCTATTCTGAAGACGGAGGTGCTTGCATTGTGGC
GTTCTGTGCCGGATCCCGTTTTACACCAGCACTGAGCAGAGATGTGTGCG
CGGCATGCCGACAACGGGATGGTTAGCGTGAACAAGAAGTGCTCCCACCA
GGGCTGTTCTACACGTGCGTCGTATGGGGCGGCGGGCACGAGAAAGGCAG
AGATGTGTGCGCGGCATGCCGACCACGGGATGGTTAACGCGAAAGAGAGC
AAGAGCACCAGCCGCGGCGGTCGTTTGAAGAAACCGTTTAGTCCCTTGCA
GGTTAAGCTCGAAGTAGCTTCCGAGGACGTTGATGGTCATGGATGTTCCG
CGATTGTGGAGACAGGCAGAAAGCGCCACCCCGCACTAACGGTTCCATCG
CACAGCGGTAGCACTACCTCGCGGGAGAGTCGCAGCGCAAAGCGGGCTCG
CATGTCCGGTAGGTTGAGCATCGCAGAGCAGCTAGCCCCCCGCACGCCTG
CGGCAGGCATGTCATCTCTCCACAATGGGGCTATTCTGAAGACGGAGGTG
CTTGCATTGTGGCGTTCTGTGCCGGATCCCGTTTTACACCAGCACTGA
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