mRNA_H-paniculata_contig14205.2559.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14205.2559.1
Unique NamemRNA_H-paniculata_contig14205.2559.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig14205.2559.1 vs. uniprot
Match: D7G511_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G511_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 3.290e-26
Identity = 56/82 (68.29%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:    1 QGALILENWLMVAPVDVAALKFAPDAHIFLGDSANTRDCVARVLPFFSNTTFGYGSVLGMHAFGLAENGSYAQGEEAVHLAI 246
            +GAL LE WLM APVD+ ALK + DAH+ LGDSAN RDCV RVLPF+S+ TFGYG+VLGMHAFGL ENG+YA  EE   +A+
Sbjct:  168 EGALHLETWLMSAPVDLPALKLSQDAHLTLGDSANMRDCVGRVLPFWSDATFGYGNVLGMHAFGLVENGAYALAEERADMAL 249
[Close]
BLAST of mRNA_H-paniculata_contig14205.2559.1 vs. uniprot
Match: A0A418WDR5_9PROT (Tetratricopeptide repeat protein n=1 Tax=Oleomonas cavernae TaxID=2320859 RepID=A0A418WDR5_9PROT)

HSP 1 Score: 75.5 bits (184), Expect = 1.780e-11
Identity = 41/88 (46.59%), Postives = 52/88 (59.09%), Query Frame = 1 
Query:   19 ENW---LMVAPVDVAALKFAPDAHIFLGDSANTRDCVARVLPFFSNTTFGYGSVLGMHAFGLAENGSYAQGEEAVHLAICQDPKECLG 273
            E+W    M  P D+ A++ A     FLG S   RD VARVLP +  +  GYGS+LGMHAFGL E G YAQ E A    + +DP++  G
Sbjct:  113 EHWGRTAMAYPRDLTAVQLAQVTDFFLGYSTMLRDRVARVLPHWDTSVPGYGSILGMHAFGLEEAGDYAQAEAAGRECVERDPRDAWG 200
[Close]
BLAST of mRNA_H-paniculata_contig14205.2559.1 vs. uniprot
Match: UPI0012441A5E (tetratricopeptide repeat protein n=1 Tax=Hypericibacter adhaerens TaxID=2602016 RepID=UPI0012441A5E)

HSP 1 Score: 72.0 bits (175), Expect = 2.160e-10
Identity = 40/84 (47.62%), Postives = 49/84 (58.33%), Query Frame = 1 
Query:    4 GALILENWLMVAPVDVAALKFAPDAHIFLGDSANTRDCVARVLPFFSNTTFGYGSVLGMHAFGLAENGSYAQGEEAVHLAICQD 255
             A   E  L+  P D+ A K   D + FLGDSAN RD V RVLP +S +  GYG +LGM AFGL E+G Y Q E     AI ++
Sbjct:   46 AAAAWEAVLLEHPRDLFATKVLQDLYFFLGDSANLRDTVGRVLPSWSESDAGYGFLLGMLAFGLEESGDYQQAERLGRAAIARN 129
[Close]
BLAST of mRNA_H-paniculata_contig14205.2559.1 vs. uniprot
Match: A0A8J7N206_9PROT (Tetratricopeptide repeat protein n=1 Tax=Candidatus Odyssella sp. TaxID=2589116 RepID=A0A8J7N206_9PROT)

HSP 1 Score: 70.5 bits (171), Expect = 8.400e-10
Identity = 41/109 (37.61%), Postives = 58/109 (53.21%), Query Frame = 1 
Query:    1 QGALILENWLMVAPVDVAALKFAPDAHIFLGDSANTRDCVARVLPFFSNTTFGYGSVLGMHAFGLAENGSYAQGEEAVHLAICQDPKECLGYECDVLRIRNGG*GKRGV 327
            +   + E  L+  P D+ ALK     H +LGD+A  RD VARVLP +S +T  YG VL M AFGL E G YA+ E+A   ++  + ++  G       +   G  K G+
Sbjct:  109 KATALWEAILIEHPRDILALKLGHFTHFYLGDAAELRDSVARVLPCWSESTPDYGYVLAMRAFGLEEAGDYAEAEKAGRRSVEINREDSWGVHAVAHVLEMQGRAKEGI 217
[Close]
BLAST of mRNA_H-paniculata_contig14205.2559.1 vs. uniprot
Match: A0A5J6MR69_9PROT (Tetratricopeptide repeat protein 38 family protein n=1 Tax=Hypericibacter terrae TaxID=2602015 RepID=A0A5J6MR69_9PROT)

HSP 1 Score: 70.5 bits (171), Expect = 8.400e-10
Identity = 39/79 (49.37%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:   19 ENWLMVAPVDVAALKFAPDAHIFLGDSANTRDCVARVLPFFSNTTFGYGSVLGMHAFGLAENGSYAQGEEAVHLAICQD 255
            E  L+  P D+ A+K   D + FLGD+AN RD VARVLP +S    GY  +LGM +FGL ENG Y Q E     AI +D
Sbjct:  115 EAVLLDHPHDLLAVKVLQDLYFFLGDAANIRDTVARVLPNWSEAEPGYSYLLGMLSFGLEENGDYQQAERMGRGAIARD 193
[Close]
BLAST of mRNA_H-paniculata_contig14205.2559.1 vs. uniprot
Match: A0A2T7PG27_POMCA (Tetratricopeptide repeat protein 38 n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PG27_POMCA)

HSP 1 Score: 68.6 bits (166), Expect = 2.780e-9
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:   13 ILENWLMVAPVDVAALKFAPDAHIFLGDSANTRDCVARVLPFFSNTTFGYGSVLGMHAFGLAENGSYAQGEEAVHLAICQDPKEC 267
            + E+ L+  P D+ ALK A   +I+LGDSA  RD VAR+LP +  ++  YG +LGMHAFGL E   Y + E+    A+  +  +C
Sbjct:  132 VWEDILLEHPGDILALKCAYLGYIYLGDSAQLRDSVARILPHWKTSSPYYGFLLGMHAFGLEETNMYERAEKQARKALELNRHDC 216
[Close]
BLAST of mRNA_H-paniculata_contig14205.2559.1 vs. uniprot
Match: UPI000D72FD32 (tetratricopeptide repeat protein 38-like n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D72FD32)

HSP 1 Score: 68.6 bits (166), Expect = 3.670e-9
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:   13 ILENWLMVAPVDVAALKFAPDAHIFLGDSANTRDCVARVLPFFSNTTFGYGSVLGMHAFGLAENGSYAQGEEAVHLAICQDPKEC 267
            + E+ L+  P D+ ALK A   +I+LGDSA  RD VAR+LP +  ++  YG +LGMHAFGL E   Y + E+    A+  +  +C
Sbjct:  132 VWEDILLEHPGDILALKCAYLGYIYLGDSAQLRDSVARILPHWKTSSPYYGFLLGMHAFGLEETNMYERAEKQARKALELNRHDC 216
[Close]
BLAST of mRNA_H-paniculata_contig14205.2559.1 vs. uniprot
Match: A0A524QEY1_9GAMM (Tetratricopeptide repeat protein n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A524QEY1_9GAMM)

HSP 1 Score: 64.3 bits (155), Expect = 8.520e-8
Identity = 36/84 (42.86%), Postives = 47/84 (55.95%), Query Frame = 1 
Query:   16 LENWLMVAPVDVAALKFAPDAHIFLGDSANTRDCVARVLPFFSNTTFGYGSVLGMHAFGLAENGSYAQGEEAVHLAICQDPKEC 267
            L+  L   P D+ AL+    +  F GD  N R  VAR +P ++    GY  +LGMHAFGL E GSYA  EEA   A+  +P +C
Sbjct:  111 LDRLLAEYPRDLLALQIGHLSDFFHGDRENLRGRVARAMPAWTRDDSGYAFLLGMHAFGLEECGSYAVAEEAGRHALDLEPDDC 194
[Close]
BLAST of mRNA_H-paniculata_contig14205.2559.1 vs. uniprot
Match: A0A6G8I9I5_9BURK (Uncharacterized protein n=1 Tax=Pusillimonas sp. DMV24BSW_D TaxID=2716226 RepID=A0A6G8I9I5_9BURK)

HSP 1 Score: 63.5 bits (153), Expect = 1.050e-7
Identity = 34/92 (36.96%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:    1 QGALILENWLMVAPVDVAALKFAPDAHIFLGDSANTRDCVARVLPFFSNTTFGYGSVLGMHAFGLAENGSYAQGEEAVHLAICQDPKECLGY 276
            + A +L    M  P D+ AL+       +  DS N R+ +AR +P +S    GY  VLGM+AFGL E+G YAQ E+    A+  +P +C  +
Sbjct:  106 KAAQMLNLHNMYFPRDLLALQTGHLLDFYCADSRNMRERIARAMPLWSEQMPGYSVVLGMYAFGLEEDGHYAQAEDTGRNALTLEPLDCWAH 197
[Close]
BLAST of mRNA_H-paniculata_contig14205.2559.1 vs. uniprot
Match: A0A3A1YYW2_9BURK (Tetratricopeptide repeat protein 38 family protein n=2 Tax=Pusillimonas maritima TaxID=2026239 RepID=A0A3A1YYW2_9BURK)

HSP 1 Score: 63.9 bits (154), Expect = 1.140e-7
Identity = 34/92 (36.96%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:    1 QGALILENWLMVAPVDVAALKFAPDAHIFLGDSANTRDCVARVLPFFSNTTFGYGSVLGMHAFGLAENGSYAQGEEAVHLAICQDPKECLGY 276
            + A +L    M  P D+ AL+       +  DS N R+ +AR +P +S    GY  VLGM+AFGL E+G YAQ E+    A+  +P +C  +
Sbjct:  105 KAAQMLNLHNMYFPRDLLALQTGHLLDFYCADSRNMRERIARAMPLWSEQMPGYSVVLGMYAFGLEEDGHYAQAEDTGRNALALEPLDCWAH 196
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14205.2559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7G511_ECTSI3.290e-2668.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A418WDR5_9PROT1.780e-1146.59Tetratricopeptide repeat protein n=1 Tax=Oleomonas... [more]
UPI0012441A5E2.160e-1047.62tetratricopeptide repeat protein n=1 Tax=Hypericib... [more]
A0A8J7N206_9PROT8.400e-1037.61Tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]
A0A5J6MR69_9PROT8.400e-1049.37Tetratricopeptide repeat protein 38 family protein... [more]
A0A2T7PG27_POMCA2.780e-942.35Tetratricopeptide repeat protein 38 n=1 Tax=Pomace... [more]
UPI000D72FD323.670e-942.35tetratricopeptide repeat protein 38-like n=1 Tax=P... [more]
A0A524QEY1_9GAMM8.520e-842.86Tetratricopeptide repeat protein n=1 Tax=Xanthomon... [more]
A0A6G8I9I5_9BURK1.050e-736.96Uncharacterized protein n=1 Tax=Pusillimonas sp. D... [more]
A0A3A1YYW2_9BURK1.140e-736.96Tetratricopeptide repeat protein 38 family protein... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14205contigH-paniculata_contig14205:185..6746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue1.8e-20
Seed eggNOG ortholog2880.D7G511
KEGG rclassRC02795
KEGG koko:K02325
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map05166
KEGG ModuleM00263
Hectar predicted targeting categoryother localisation
EggNOG OGsKOG2610@1,KOG2610@2759
EC2.7.7.7
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Exons6
Model size992
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14205.2559.1prot_H-paniculata_contig14205.2559.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14205 3726..6716 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929131.6788898-UTR-H-paniculata_contig14205:184..3761622929131.6788898-UTR-H-paniculata_contig14205:184..376Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14205 185..376 -
1691480742.9999151-UTR-H-paniculata_contig14205:184..3761691480742.9999151-UTR-H-paniculata_contig14205:184..376Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14205 185..376 -
1622929131.6919806-UTR-H-paniculata_contig14205:504..6841622929131.6919806-UTR-H-paniculata_contig14205:504..684Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14205 505..684 -
1691480743.012933-UTR-H-paniculata_contig14205:504..6841691480743.012933-UTR-H-paniculata_contig14205:504..684Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14205 505..684 -
1622929131.7042892-UTR-H-paniculata_contig14205:2446..25881622929131.7042892-UTR-H-paniculata_contig14205:2446..2588Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14205 2447..2588 -
1691480743.0244093-UTR-H-paniculata_contig14205:2446..25881691480743.0244093-UTR-H-paniculata_contig14205:2446..2588Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14205 2447..2588 -
1622929131.7152205-UTR-H-paniculata_contig14205:3559..37251622929131.7152205-UTR-H-paniculata_contig14205:3559..3725Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14205 3560..3725 -
1691480743.0340095-UTR-H-paniculata_contig14205:3559..37251691480743.0340095-UTR-H-paniculata_contig14205:3559..3725Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14205 3560..3725 -
1622929131.7605913-UTR-H-paniculata_contig14205:6716..67461622929131.7605913-UTR-H-paniculata_contig14205:6716..6746Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14205 6717..6746 -
1691480743.0737445-UTR-H-paniculata_contig14205:6716..67461691480743.0737445-UTR-H-paniculata_contig14205:6716..6746Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14205 6717..6746 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929131.7273734-CDS-H-paniculata_contig14205:3725..37301622929131.7273734-CDS-H-paniculata_contig14205:3725..3730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14205 3726..3730 -
1691480743.0435994-CDS-H-paniculata_contig14205:3725..37301691480743.0435994-CDS-H-paniculata_contig14205:3725..3730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14205 3726..3730 -
1622929131.737715-CDS-H-paniculata_contig14205:5649..58081622929131.737715-CDS-H-paniculata_contig14205:5649..5808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14205 5650..5808 -
1691480743.0548553-CDS-H-paniculata_contig14205:5649..58081691480743.0548553-CDS-H-paniculata_contig14205:5649..5808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14205 5650..5808 -
1622929131.7487218-CDS-H-paniculata_contig14205:6598..67161622929131.7487218-CDS-H-paniculata_contig14205:6598..6716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14205 6599..6716 -
1691480743.065081-CDS-H-paniculata_contig14205:6598..67161691480743.065081-CDS-H-paniculata_contig14205:6598..6716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14205 6599..6716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14205.2559.1

>prot_H-paniculata_contig14205.2559.1 ID=prot_H-paniculata_contig14205.2559.1|Name=mRNA_H-paniculata_contig14205.2559.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
MVAPVDVAALKFAPDAHIFLGDSANTRDCVARVLPFFSNTTFGYGSVLGM
HAFGLAENGSYAQGEEAVHLAICQDPKECLGYECDVLRIRNGG*
back to top

mRNA from alignment at H-paniculata_contig14205:185..6746-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14205.2559.1 ID=mRNA_H-paniculata_contig14205.2559.1|Name=mRNA_H-paniculata_contig14205.2559.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6562bp|location=Sequence derived from alignment at H-paniculata_contig14205:185..6746- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGGGCGTTGATTCTGGAGAATTGGTTAATGGTCGCACCGGTCGACGT
TGCAGCGTTGAAGTTTGCACCAGACGCGCATATCTTTCTGGGAGACAGCG
CCAACACGCGCGATTGCGTGGCCAGAGTTCTCCCGTTCTTCAGCAACAGT
AAGTGATAATAATTTGGCTGGGTGCGGTATTCAAGTAAATCAAAGCAGGT
CGGGTTGCTGTGGTTATCATGTTCAGAGGGAGAAGAGAAGTTGGTCGCGG
TCTATCTAATGTATGTACGTCGATGAGACGACGTGTCACTATTATTGCCC
TCCTGTAGAGCTACCCATCCAGTACGATGGACTCTAGCACCCAGTCTGGC
TAGGTTGTCGCGAGTTGCGTTAAATTTGTTATATATATCACGATGGATTA
TTTCAAGGTACCCGTAACGTTGAGAAAACGTCGAAGAGATGAACGCCTGT
GTCTTCTGGGGGCCTTATGATTATTTCAAGGTACCCGTAACGTTGAGAAA
ACGTCGAAGAGATGAACGGCTGTGTCTTCTGGGGACCTTATGTATGTTGA
CTAGTGAGGCGTTTCCGATGTATTGTATGGTGATTGCTCTGTGGCGTATG
TATATACGTGTATCCTCCACATAGTGCGATGCTGGCAACTGTCTCTCAGT
CAGTACCACTATACCACATTGTATCAAAATCTACTTGCGGGAAGAAAAAA
CAATACCCAGTCCTGTTTTTGCCCGAAGCTTGAGCAAGTAGTGTGCGATA
AGCACACGGCATGTGTACAAGCTCCTACTACGTACCTGTACTCCCCAGAT
CAAATTTGTCGGTAAAGAGCAATCGATTTTATCCCCCCCCGGAAACCTCC
CGAGTATAAGTCTAACGCCTCCCGCAATGTCCATCGCCTACCACAATCGT
TTGCCGTTTTCCCGTGGGCACTATGACTCGCGCCCCAGCGACATTTGGAT
ACGGCAGTGTACTGGGCATGCACGCCTTTGGTCTCGCAGAAAATGGGTCA
TACGCTCAGGGAGAAGAAGCAGTACACCTGGCCATCTGCCAAGATCCGAA
GGAGTGTCTGGGCTATGAATGCGATGTCTTACGTATACGAAATGGAGGTA
AAACTCGTTTGTAATTTTTTCTATTAGTTCTTGAGTACTTTATTCAAGAT
ACGGGATGGATATATTGATGACCTCGTATCCCTACAATGCCGGGACGGGG
CATGCCAGGTTTTCGCCGGACAAGCTAAGCTTTTACAAGGGTGATACTAG
CCACTGCTGATCGTCCTTGCGTTGCTACGCCAACCGGATTCTGCCATAGG
GTGTGGGGGTAGGTATCCCGGGTTGTTGTGGCGGTCGTGGGGTGACGAAA
TGTTGTCATGCATCCGGCAGGCGTAAACTATACCGCAAGCGAAGTACCAT
ACGGGACTTTGATCTTCGCTTGTGTGTACAAAAAGCGTCGTGCCACACAG
CGAACACGTTGCTTCGTGTGTGATACAATTTGGATTATGACCTACTTATT
ACGTGCTGATTGGAGTATGATGAAAAATATTTTTCCTTTGGAGCGAAACA
ATGACCAGTTCAGCCGACATCCTATCATAGGGTGTGTGAACTATTTGATC
AGGGTCGACAAGCTCACTGGATAGACCGCATGATCTCTCCATGCTCTGCA
ATAAGGGGTGTTAGAAAACACTCGGAACCGAAGCACTTCTGGACCATGAC
CGCGGTTTGTCATGTGTATGAGGTAGGAGGTTTGATGGATCTGAAAATTA
TGGAGGTATTGCAATATTCTATGTTCCCGCAGGTCGTTTGCTGCTTTACC
TTATGTTTTTCTCGGGGTAACTGGAGACCGCCCGAAACTACACCAGGTAT
TGACATGTTCAATATTGCGTGGCTTTGTATACTCATGAGGATGGTCCATT
GTCAATCGTAGGTACGATGGTGTGCATCAGGGCGAACGCGTGGTTTGAGG
CACAGCGCACTGGTGCGTGCGTATGTACGTGCTCCTCTGGACAGACGCGT
AATCGTTGTGAATCAACCATCCTCCGCAATTGTGATCGGTAGACTCGTAC
TTATTTGGAATAGTCGGGAGTGTTGGTGCCTGGTGCCGGATGTTAATGTA
GTCTCGATGGTGCCAGTTGGTCGGTATATATTGCAATTGATACCCAATTG
ATGCCACTACGAGGTAAAGTTAACGTCTTTTTCGTGTGTCATGACCCATT
ATATACGTCGTTCAAATCTTATCACACATTCGCGTTCACCTCTGTTATGT
TGTAACGTGCAGATGTACTTGCATGTCTTGATAAAGCTCAATGTATACAT
TTACGTTTTTAAAAGTTTATATGTATGCACGTGGGATGAGTGGTGATGAA
TGTTGACGCCTTTGTTTGGGATCTTGATCGACTCAATTCGCTCTTGTCAT
GATTCATTTTTCTATATTAGTCTAATCCGATCAAATCCGATCAAATCCGA
TCAAATCCGATCGCACAATTTCCTTTCACATTTTACATTCAACTTTCTTG
TAGTGTTTGTTACCTGCAGCGGCGTAACTCGATACAGAGCTCCGTGGGCA
TTTCTTCATTTTTATCGTTTCACACTCATGCGAATGGTGAGCGGCAACGC
TAATCCTCAGCATGGGATTCGTTTGGGGATCTTTCCAGCGAGAACCATAG
CAAGATAGTATACATGCAGTATAGTAACCATGTGTATTGTTTGAAGTCTT
GGGACTAAGGATAATGACAGCAGAGCAACCAATTGGCGCACTACGGTTGG
GGTGAAGAGAAACATGGAGCATGACCAAGCATATGACGGTCGGAGCCAAG
CTTTAGTTTTGTTTCATGATTGCCAGGGAGGACGTACAACAGTATGTAAC
AGTTTCCTGCTACTGTGTGCGTTGCCAAGCTTGACGAGTAATTGCTTCGA
TTTATGATAATAGAGAAGTACCTCGTTTTTGTTTTTTTATGCATACGTTT
TTTGCTATCCATCCCTACGGGTGGGTGTATCCCGAAAAAATCGTGCTTGG
TAATCCTTGACTGCAGGCTAGGGCAAGCGAGGGGTGTTCATTCCTTACGG
AAGAGCGGGATACGTGGGAGGACAAACCCGGACCCTTGAAAGAGCATCTG
GCGTGGCAACTCGCGTTGTTTTCGCTGGAGAGAGGTCAGGAAAGAAAAGC
CACTCGAGTTTTCGACACAATACTCAATCCTCCCAGGGTAAGCTGAAGGA
ACTTTGCGCGTTGAACTGGATACCAAGTACAGTGTATGCCAAGGTGAACG
CTGAAGCTAAGGCCGTGTATGGACCATTAAGAAAATTCTGACTGCCTAAT
CAGTTTTGGAGTTCTTGTCTATTGTTTGGCCGTTACGAGAAACATGGTGC
GTGCTCGTTCTCGCCCTGCACTACATCCAGCGTAATCCCTCCCCAATGAA
CAACGATAGAAAAACGACTCCTTTGGCACCTGATATTGCACTGACTAGCT
ACCGAAAGCTGGTTGAGCAATTTCGGTCGATGTGTCCATCATTATTCACA
ACTGATCGTTAAATTGAGAATATATGTATATATATATATATATATATTGA
CCTTTATTAAGTCTGGGTTCTGAAGGGGTGACTATTAACGAAGGAAGAGG
AAACGAAACCGAATATGAAAATGACCATTTCAGGCTCTTGTGGTGTCTGT
ACTTGGTCGGTGCGCAAACATCCGCGCTGGCACGTTGACTAACAGCAGGG
TGCTACGGCTAGTTTGAGTTTGAGTTTTCGCTGGTTATCGTTATTACTTG
GTTATCGTTATTACTTGGTTATCGTTATTACTTGGTTATCGTTATTACTT
GGTTATCGTTATTACTTGGTTAATACGTGCACGCTCTAAAGCGATGTTAT
TATGACTTTTTTGAACATCCAATTTGTTCTCACCAACAGTTCAGAATGAA
TGTTTACATATATACGGTAAAACGTCAACTTGGTTTCGATTTTTGTATTT
TTAGGACGGTGTGATTTCTTGTTCCCGTATTTTTACGGTTGCTGTATACA
ATGTAGCTGATATACCCACATGGATAACTTTCTGGTGACAAAAAAGTGGT
TTATTCTTGGGCAATTAAGAGACATTCAGTCATATTTTCCCCCGTGACCT
TGGTGTCTACCGGAGAATTAACAATATTTCATCTCATTGACGCTTTCGGC
ACTGACAGATTTCATTCGTCGATGGTCATCATCGACTGTCGCGCACCGTG
AATCATATTCTAGCCCTCAGGGCGACTCAGTACTTGGTCCTACTCGCCGA
CTCCCCCGGGTTCAAAAGGTGCTTTTGCCCCGCCGCGGAACCCAGTCAGT
GTGAATGAGAAACGTTGCCTCTTTTGTGACTGCTTTCCTGAAACGGACGA
TAATACAGGATGGCAAGAAAGGGGTAGGACCCGTTCGACTGCCTCCGCCG
TCGCCACTGGCTCTCACGGGGGCGTGCAATATTTTGTGGACGATGGATAT
TTTTGTGGTAGAGACAGGAGAAGAGCGGTGGCGAGGAGTTGCCGAGGTGG
GTATTGGGGGTGCTGCTTCGCGACGTACTGTAGGTAGAAAAGAGTGCTTG
CAGATCACTTTGTAAGGCTTTTTAACGTCTTTTTCTATAAAGTAACGTAG
CACTTCCTCTGTCCCATGCGTAAATTCAGTTGTGTGTTGGCAGATCATGT
TTACTAGATCTAAGAGTGTTCAGAGGCTGCCGTGGTTGGAATCGTTTGCA
GGCGATGATCTGATGAGACTCATACACGCTATTTCGTAGCTCATTCCGAT
TTGGGGTAACAGGATTAATGGCCGCTCGAGGTTGGGCTACTTATGACATT
TTGACATTTTTTTCAAATTTTTCCCGTTTTTCCATTGGAAAAAATGACGA
AAAGGGGGGCAAAACTTGGCCTTTTTTCGGCCGTGTTCTTTTCGTTTCTC
GCGCCGCGCGTCCACTCGATGGGCTTGGCCTATTTTCCGTGAAAGTTTTG
GAATCAAGCCCGATAACATGAAGGATTTTGACTGAAACAAAATCCGGGAG
ATGTTCAAATTCCCCTCCGAAAAATGTTGACTTTACTTATGAGACAGAGT
AAGTACTTGTTCTCAAGGAGGCGGTTTAGGACAAAGAAAGAAGGTCATCC
TCTAACGAACAAATGTCGAGAATGAGAGCGCGGTAGTCAGTCATGATTGG
CAGCAGCTTTTCCACTATTTTAGTACATGTCTGTTCTGTTCTGTACGTAC
GTACACTTGTCTGTGCTGGACTGGTTGTCCGAACAGCGGCAGCTTCTCGT
TCCTGTAGTCATGTATGTCGTCGGCGCTAAGGTTGCCCCTGGATTTTGAG
GGGTAGTGGATAGGTAGGGAGCGAGTGGGTGTTGGATGGGTACCGGCGCG
AAAAAGGGGGTTTTAATGGATCATGACGGTTCAAGTTGACGCTGGTTTCG
GAACACTTTTTGCAAGGTTGTTTCCCTTCTTCAAAGGCTTTCAATGGATC
ATGACGGTCGTCGTTTTCTCGGAACGGTTGGTTATGCACACTCTTGTGAC
GCTGCCGTGGGTTCCAATATAAAAGAAAATGTTGTTCGAACCGAGGCGTT
CTCCCTAGTCGCTTGTTGATTAATGCCGGTAATTATTGCGGTGATGTATT
CAGCTAGGGCATAGAGCGACAGGTACGCATGTTATGCCGCTATCTTCAGG
AGAATCGATATTTCGGGTTCAACTAACAAGAGTAGTGAATGGGTGTGGAA
TTTTGACTTGTTAGCTCCCCTTGAACAAAGCAAGAATGACAAAACTCAGT
TAAATCAGAATTGCGAGTGAAGAACGTTGCAACTATTAAGTATTCGTGTA
TTTATTGCTTAACGTGGCAAGTGTTGAACTGTCTTCTCTTCGAAATGGGG
AGCAACAAATATTTATGCAGGAATAATACCCCAACGCATTTGGTAAAACG
GCTTGTTGACTATAAACATGCGAGTTGTTGGTGCAAAGCTTTGGTTCGAG
TATCGATAAGCATGTGCTACTCTTGTGCAAGGGGTTATTTTCAGTTATAA
TTTCATCCCCCGTGCAAAAACTCCCACCTGAATCGGCTGGTTCTCGCCTA
CATAATTAACAGGCCTGGACCTACTACGAGCACGCGAGGCATTTATCCAC
CTTGCACGATGTTCACGCTCTTATGGCCTTCTCGGTGATGGCCAACGGGG
CTTCTGACGCGCAAGAGTCGTATTTTTGGACTGCGAAGGCAGAAGGCATC
CTGGCCTCCATGCGAGAGTATGTTTGTACGAAGGCGGGATCTGTCACAAA
ACAACCTTCACTGGAGGGGGACAGCGACTTGAACCAAAATGACTGTAATG
GTAACGGCACAGTACAGGGGGTGGTGAGTGATGATGGCCTTCAAGTTTCC
GTACAGGATTTACTCCAGAGGACAGATTCACAGCCGTCCCCGGAACGGCC
CCGGAACGGACCCCGGAACGGGGCATCATGTGTCCTGGCGTCGTGGAACT
CCACTCTTTCCCCGTGGGGCGAGATCCCGCGAGCGAGGTGACGTCAAGAC
AGGGGTTGCCGGATAACCTGTGGGTGGCGGAACATATGGGCTTGCCCTTG
TGTGAGGCGATC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig14205:185..6746-

>mRNA_H-paniculata_contig14205.2559.1 ID=mRNA_H-paniculata_contig14205.2559.1|Name=mRNA_H-paniculata_contig14205.2559.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig14205:185..6746- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCGCACCGGTCGACGTTGCAGCGTTGAAGTTTGCACCAGACGCGCA
TATCTTTCTGGGAGACAGCGCCAACACGCGCGATTGCGTGGCCAGAGTTC
TCCCGTTCTTCAGCAACAATGGTCGCACCGGTCGACGTTGCAGCGTTGAA
GTTTGCACCAGACGCGCATATCTTTCTGGGAGACAGCGCCAACACGCGCG
ATTGCGTGGCCAGAGTTCTCCCGTTCTTCAGCAACACGACATTTGGATAC
GGCAGTGTACTGGGCATGCACGCCTTTGGTCTCGCAGAAAATGGGTCATA
CGCTCAGGGAGAAGAAGCAGTACACCTGGCCATCTGCCAAGATCCGAAGG
AGTGTCTGGGCTATGAATGCGATGTCTTACGTATACGAAATGGAGCGACA
TTTGGATACGGCAGTGTACTGGGCATGCACGCCTTTGGTCTCGCAGAAAA
TGGGTCATACGCTCAGGGAGAAGAAGCAGTACACCTGGCCATCTGCCAAG
ATCCGAAGGAGTGTCTGGGCTATGAATGCGATGTCTTACGTATACGAAAT
GGAGGCTAGGCTAG
back to top