mRNA_H-paniculata_contig1420.2556.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig1420.2556.1 vs. uniprot
Match: A0A6H5JTW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTW0_9PHAE) HSP 1 Score: 238 bits (606), Expect = 4.800e-73 Identity = 153/314 (48.73%), Postives = 183/314 (58.28%), Query Frame = 1 Query: 4 GGDVWCAALLLSTWLLANPEVVRWLSVLELGSGLGLCGIAAGYLARTVTLTDYVDELLENLRYNVNLNREPRITFVSRTGNRPS-GSP----------------LTFTRATAGERTKRAHSSASRGRAKLARMDVCKLDWTTFAGRG-EEWKPCRDDVGDGRGDDGSE--WWEDAGPGG--AGTNGDGKGVGSRA-------------AMPRCDVVIGSALVYSPHHQCVADVLLRAFSEGGCRAAYIVQLSTRQENSQ--------GFDEFLLRLRSCGLRYRLQRMPAVLPSPLLDELQRRMSTLPVVGGPV 816 GGD+WCAALLLS WLL NP++V+ +VLELGSGLGLCGI AGYL+++VTLTDYVDELL NL +NV++NR PRI V GN S G+P +R R S +R+ V KLDWT + EEW+ G +G WW+D GPG G D G RA A RCDV IGSALVYSPHH CVADVL RAF+ GGCRA YI+QLSTRQ GFD+FL RL SCGLRYRL+RM +LP LL+E+ RR +++ +VGGPV Sbjct: 17 GGDIWCAALLLSAWLLENPQLVQGTTVLELGSGLGLCGIVAGYLSKSVTLTDYVDELLVNLEHNVDINRAPRIVAVEWRGNETSQGAPSESQEXXXXXXXXXXXXXXXXXXGRQRPSREKSLLEVRPLSPSRVRVRKLDWTAYDHEATEEWE---------EGGEGLRGCWWDDPGPGDDRPGKQEDRGGAEKRATTTTTPSTPEDAGATLRCDVAIGSALVYSPHHACVADVLSRAFASGGCRAGYILQLSTRQARGPLCLVSLRPGFDDFLHRLGSCGLRYRLRRMSDILPGDLLEEI-RRSASIDIVGGPV 320
BLAST of mRNA_H-paniculata_contig1420.2556.1 vs. uniprot
Match: D8LM85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM85_ECTSI) HSP 1 Score: 225 bits (573), Expect = 4.520e-68 Identity = 147/304 (48.36%), Postives = 178/304 (58.55%), Query Frame = 1 Query: 1 VGGDVWCAALLLSTWLLANPEVVRWLSVLELGSGLGLCGIAAGYLARTVTLTDYVDELLENLRYNVNLNREPRITFVSRTGNRPSGSPLTFTRATAG-------------ERTKRAHSSASRGRA-KLARMDVCKLDWTTFAGRGEE-WKPCRDDVGDGRGDDGSE--WWEDAGPGG---------------AGTNGDGKGVGSRAAMPRCDVVIGSALVYSPHHQCVADVLLRAFSEGGCRAAYIVQLSTRQENSQGFDEFLLRLRSCGLRYRLQRMPAVLPSPLLDELQRRMSTLPVVGGPV 816 VGGD+WCAALLLS WLL NP++V+ VLELGSGLGLCGI AGYL+++VTLTDYVDELL NL +NV++N PRI V GN S P + ++ +R R + S R +R+ V KLDWT + E W+ G +G WW+D G GG A T A RCDV IGSALVYSPHH CVADVL RAF+ GGCRA YI+QLSTR GFD+FL RL SCGLRYRL+RM +LP LL+E+ + S + +VGGPV Sbjct: 33 VGGDIWCAALLLSAWLLENPQLVQGTRVLELGSGLGLCGIVAGYLSKSVTLTDYVDELLVNLEHNVDINHTPRIDAVECRGNGTSLEPPSESQEXXXXXXXXXXXXXXGRQRLGRENESLLEVRPLSPSRVRVRKLDWTAYDHDATEAWE---------EGGEGLRGWWWDDPGRGGDRXXXXXXXXXXXXRATTTTTPSTPQDAGATLRCDVAIGSALVYSPHHACVADVLSRAFAAGGCRAGYILQLSTRP----GFDDFLHRLGSCGLRYRLRRMSDILPGDLLEEIHQSAS-IDIVGGPV 322
BLAST of mRNA_H-paniculata_contig1420.2556.1 vs. uniprot
Match: A0A151ZAM5_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZAM5_9MYCE) HSP 1 Score: 80.5 bits (197), Expect = 4.240e-14 Identity = 38/69 (55.07%), Postives = 52/69 (75.36%), Query Frame = 1 Query: 1 VGGDVWCAALLLSTWLLANPEVVRWLSVLELGSGLGLCGIAAGYLARTVTLTDYVDELLENLRYNVNLN 207 +G +W AA++LS W+ A+PE SVLELGSG+GL GI + Y A VTLTDY++ L++NL+YNV+LN Sbjct: 58 IGCAIWDAAIILSRWIYAHPEAFTNKSVLELGSGVGLPGILSSYYANDVTLTDYLEPLIDNLKYNVDLN 126
BLAST of mRNA_H-paniculata_contig1420.2556.1 vs. uniprot
Match: F0ZXQ6_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZXQ6_DICPU) HSP 1 Score: 80.1 bits (196), Expect = 5.690e-14 Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 1 VGGDVWCAALLLSTWLLANPEVVRWLSVLELGSGLGLCGIAAGYLARTVTLTDYVDELLENLRYNVNLNREPRITFVS 234 +G +W AA++LS W+ N SVLELGSG+GL GI + Y A+ VTLTDY++ L+ENL+YNV LN + + F S Sbjct: 58 IGCSIWDAAIILSRWIYKNQNAFEGQSVLELGSGVGLPGILSAYYAKNVTLTDYLNPLVENLKYNVELNAKQQEGFDS 135
BLAST of mRNA_H-paniculata_contig1420.2556.1 vs. uniprot
Match: D3B3S1_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B3S1_POLPP) HSP 1 Score: 71.6 bits (174), Expect = 5.910e-11 Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 1 Query: 1 VGGDVWCAALLLSTWLLANPEVVRWLSVLELGSGLGLCGIAAGYLARTVTLTDYVDELLENLRYNVNLN 207 +G +W AA+++S W+ + + LELGSG+GL GI A + +++TLTDY+ LLENL+YNV+LN Sbjct: 58 IGCAIWDAAIIMSRWIFKHQDAFSGQKCLELGSGVGLTGILAAHFCQSITLTDYLPPLLENLKYNVDLN 126
BLAST of mRNA_H-paniculata_contig1420.2556.1 vs. uniprot
Match: L8H3M1_ACACA (Methyltransferase, putatative (Fragment) n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H3M1_ACACA) HSP 1 Score: 71.2 bits (173), Expect = 6.870e-11 Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 1 Query: 1 VGGDVWCAALLLSTWLLANPEVVRWLSVLELGSGLGLCGIAAGYLARTVTLTDYVDELLENLRYNVNLN 207 VG VW AA++ + W+L N V V+ELGSG+GL G+ A Y A V LTD++ EL++NL+YN+ +N Sbjct: 51 VGCAVWDAAIIQARWILENENVFAGKQVIELGSGVGLPGLTAAYFAANVVLTDHLTELVDNLKYNIEIN 119
BLAST of mRNA_H-paniculata_contig1420.2556.1 vs. uniprot
Match: A0A0D2UJZ0_CAPO3 (UBR-type domain-containing protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UJZ0_CAPO3) HSP 1 Score: 71.6 bits (174), Expect = 1.510e-10 Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 1 Query: 1 VGGDVWCAALLLSTWLLANPEVVRWLSVLELGSGLGLCGIAAGYLARTVTLTDYVDELLENLRYNVNLNRE 213 +G +W ++L+ W+ N R +VLELGSG GL G+ A + A VTLTDY+D +L+NLRYNV LN E Sbjct: 57 LGCALWDGGVVLARWIYENGAAFRGQTVLELGSGCGLPGVLAAHYAAHVTLTDYIDPVLDNLRYNVRLNSE 127
BLAST of mRNA_H-paniculata_contig1420.2556.1 vs. uniprot
Match: D3B9V4_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B9V4_POLPP) HSP 1 Score: 68.2 bits (165), Expect = 8.740e-10 Identity = 31/69 (44.93%), Postives = 47/69 (68.12%), Query Frame = 1 Query: 1 VGGDVWCAALLLSTWLLANPEVVRWLSVLELGSGLGLCGIAAGYLARTVTLTDYVDELLENLRYNVNLN 207 +G +W AA+++S W+ + + LELGSG+GL GI + +++TLTDY+ LLENL+YNV+LN Sbjct: 50 IGCAIWDAAIIMSRWIFKHQDSFTDQKCLELGSGVGLTGILTAHYCQSITLTDYLPPLLENLKYNVDLN 118
BLAST of mRNA_H-paniculata_contig1420.2556.1 vs. uniprot
Match: T0Q6P6_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0Q6P6_SAPDV) HSP 1 Score: 68.6 bits (166), Expect = 1.400e-9 Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 1 Query: 13 VWCAALLLSTWLLANPEVVRWLSVLELGSGLGLCGIAAGYLARTVTLTDYVDELLENLRYNVNLNREPRITFVS 234 +W AA++L+ W+ N E R SVLE+GSGLGL GI A ++T+TLTDY + L+ L+YNV+LN + + V+ Sbjct: 187 LWGAAVILARWVHLNRERFRERSVLEVGSGLGLSGIVAAAYSQTMTLTDYQQDTLDALQYNVDLNLDASTSHVT 260
BLAST of mRNA_H-paniculata_contig1420.2556.1 vs. uniprot
Match: A0A1V9YSW7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YSW7_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 1.560e-9 Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 1 Query: 13 VWCAALLLSTWLLANPEVVRWLSVLELGSGLGLCGIAAGYLARTVTLTDYVDELLENLRYNVNLN 207 +W AA++L+ W+ N ++ +VLE+GSGLGLCGI A + +TLTDY + L+ L+YNVNLN Sbjct: 146 LWGAAVILARWIHLNRQLFHGQTVLEVGSGLGLCGIVAAAYSDQITLTDYQQDTLDALQYNVNLN 210 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1420.2556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1420.2556.1 >prot_H-paniculata_contig1420.2556.1 ID=prot_H-paniculata_contig1420.2556.1|Name=mRNA_H-paniculata_contig1420.2556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=272bp VGGDVWCAALLLSTWLLANPEVVRWLSVLELGSGLGLCGIAAGYLARTVTback to top mRNA from alignment at H-paniculata_contig1420:24503..26629- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1420.2556.1 ID=mRNA_H-paniculata_contig1420.2556.1|Name=mRNA_H-paniculata_contig1420.2556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2127bp|location=Sequence derived from alignment at H-paniculata_contig1420:24503..26629- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1420:24503..26629- >mRNA_H-paniculata_contig1420.2556.1 ID=mRNA_H-paniculata_contig1420.2556.1|Name=mRNA_H-paniculata_contig1420.2556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at H-paniculata_contig1420:24503..26629- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |