mRNA_H-paniculata_contig10018.27.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10018.27.1
Unique NamemRNA_H-paniculata_contig10018.27.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10018.27.1 vs. uniprot
Match: A0A6H5JMT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT6_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 1.030e-40
Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = 1 
Query:  403 MLDEDPSERRRKCDHPECSQMATRGFILPRLCGMHRETRMLRIVPSEVDSGSDWGSDTEADARDYGRFKRIENADQDTIRRVLKVYPPRCPKMKDKI 693
            MLDEDPSERRRKCD  EC QMAT GFILPRLCG H E RMLRIVP++V+SG +WGSD EADARDYGRF+RI  AD +TI+  LK+YPPR P+ + +I
Sbjct:    1 MLDEDPSERRRKCDRDECEQMATHGFILPRLCGQHSEARMLRIVPADVESGDEWGSDAEADARDYGRFRRIAGADPETIQNALKLYPPRNPETRARI 97
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10018.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMT6_9PHAE1.030e-4071.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10018contigH-paniculata_contig10018:3681..8520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1027
Cds size1026
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10018.27.1prot_H-paniculata_contig10018.27.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10018 3682..8520 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928709.4585106-CDS-H-paniculata_contig10018:3681..40661622928709.4585106-CDS-H-paniculata_contig10018:3681..4066Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10018 3682..4066 -
1691480587.2334044-CDS-H-paniculata_contig10018:3681..40661691480587.2334044-CDS-H-paniculata_contig10018:3681..4066Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10018 3682..4066 -
1622928709.4713664-CDS-H-paniculata_contig10018:4965..50871622928709.4713664-CDS-H-paniculata_contig10018:4965..5087Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10018 4966..5087 -
1691480587.2435272-CDS-H-paniculata_contig10018:4965..50871691480587.2435272-CDS-H-paniculata_contig10018:4965..5087Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10018 4966..5087 -
1622928709.4854827-CDS-H-paniculata_contig10018:6091..64511622928709.4854827-CDS-H-paniculata_contig10018:6091..6451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10018 6092..6451 -
1691480587.2523866-CDS-H-paniculata_contig10018:6091..64511691480587.2523866-CDS-H-paniculata_contig10018:6091..6451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10018 6092..6451 -
1622928709.497369-CDS-H-paniculata_contig10018:7232..73531622928709.497369-CDS-H-paniculata_contig10018:7232..7353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10018 7233..7353 -
1691480587.2668428-CDS-H-paniculata_contig10018:7232..73531691480587.2668428-CDS-H-paniculata_contig10018:7232..7353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10018 7233..7353 -
1622928709.5186603-CDS-H-paniculata_contig10018:8482..85201622928709.5186603-CDS-H-paniculata_contig10018:8482..8520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10018 8483..8520 -
1691480587.2739289-CDS-H-paniculata_contig10018:8482..85201691480587.2739289-CDS-H-paniculata_contig10018:8482..8520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10018 8483..8520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10018.27.1

>prot_H-paniculata_contig10018.27.1 ID=prot_H-paniculata_contig10018.27.1|Name=mRNA_H-paniculata_contig10018.27.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=342bp
RARSEVVGNDGQRPIASDHGRSTSPYGSGLSPPGYITANNGGAGAAGGAY
PGQVGTTAASAAAAAAAAAANAARPVEWWQQDGWRVGVPNPPQPPVGAND
PSGNSSGGGTGEADGQRESGGVGCGGPKGNALSQMLDEDPSERRRKCDHP
ECSQMATRGFILPRLCGMHRETRMLRIVPSEVDSGSDWGSDTEADARDYG
RFKRIENADQDTIRRVLKVYPPRCPKMKDKIRQDFISAPVSPPSGSTAAP
AAPLPAAPAPAPALAPQPPSSSPSAPDWGTREAPPPSPAASSSRGSSVNG
NTTPRQRGGGGGGGRGRRSPGVSRKPGRPPGATAAAGGERRG
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mRNA from alignment at H-paniculata_contig10018:3681..8520-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10018.27.1 ID=mRNA_H-paniculata_contig10018.27.1|Name=mRNA_H-paniculata_contig10018.27.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4840bp|location=Sequence derived from alignment at H-paniculata_contig10018:3681..8520- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGCAAGGAGTGAGGTTGTTGGAAACGATGGTCAGAGGTGTGTTCGTGT
TGTATTTGTTGTGGAGCTGGGAATTTGGTTTTGGGGTGGGTGAGGGTAGT
GGGTATGGTGTCTATTTTTTGGTCTAATGTTTTGTGGAGGGGGGGTTGGA
GGTCAGGAGGGGTTAAAAGAATAATTTGTTTTTGGAAAGATATTGGATGA
TGACTGCGCTGGTATCGCAGTAGTTCACGGGTTGTATGCTATCAATACGC
AGGGTGTTCAGTTTCGTTTTTCCTGCCAACTCGATTTTCCCTACGAAATT
TAGATCGTGTGCTATTCATCGGAAGAGCACGTGTATATTTCATGATACAC
CTCGAAAAGATCTTTCGAACGAGGCAACGTTTCGGCGTCATGAGCAGCAG
CCCTTCCTTTCCGACAAAGTCGAATGTGATAAGATGTCCTATATTTCTGT
AGCGATTTGTTCAACGTTGTGCTCTCTAGTATGTTGTAAAACCACGACTT
CGCTAATCCGTGAAGTGAGTCATGCTCCAGCGCTTTGTCCTCGTCCCACG
AACAAATATTTTTTAAGTTTACTTAGTATAGAGTTAGGAAGTGTTCCGAA
ACGACGATGACCTTCTCGTATCAGAGTCACCCTTGTTATTCCCCGTGATG
CAGTGTCAGAACAGAAAAAGTACTGAAGTGGGGATTAGACGGGAATCATA
TGGGGTCGGGATGTAAAATGGTCAAAATAATGAGTATCCCTCCCCCTATT
GGTCATGATTTATTCTTACTCATTGGTGTACACAACTGCAGATTGAAGTC
AGCTACATAATGTCAACATGAGTGCAAAGGAATTATTACATACGCGTCAA
AGCTATAACTCTGCCAACTGCGGCAAATGAGTTGGCTTACGGATGATAAT
ATCTTTGGGTGAAAGCGAGGGTTACTTTCGGGGTATCAGTCGTATTTCCC
TCCCCCCCCCCCTCCCTGTCCGTCCTCCTGAGGACGCGTAATAATCAATG
GTCTTAATAATAACTATGGCATGCAAAAGATGTCTACTCTCCCTCATTGG
TCATGATCTAAATTCGCTGATAAATGTATTCAAGTGTAGATTGAAGTCAG
CTGCATATCTTCAGCATGCCCCCCCCTCCCCCGCCCTCTCTTTTGCGTGC
GACACATCCTCTGCCAGGCCCATTGCAAGCGACCATGGCCGTAGCACTTC
ACCATATGGTTCCGGCCTGTCACCCCCTGGCTATATTACGGCTAACAATG
GAGGAGCGGGGGCTGCTGGCGGTGCCTATCCAGGGCAGGTGATGTCAAAG
TAGGACTTCTGTGTCTTTTTGTTGTTGTCTGCTACTTCACATTAGCCCTT
TCCCGGGTCGAGTCCCGTTGCTCGTATTGTAGACCCCAGTAAACACTTTG
CTCTGTTCAGTGTGCAAGATACCAACCGCATCATCGTGCCCCATGTACAT
GAGAGGTGTAGGCTAGTTTCATGCGTTCCAGAGCAGTCTGTGCTGTTGTG
TCGATCGATTTACTCGGCACGAGGAAGCTTTCTGGCTGCTCTGTTTGGTC
TACACTAATAACGCTGTACCGTGTTCCGCCACGGAGTTAGCTGTACAGCG
ATGAGGAGCTGCTCTGTCTGTGCGGCGTGTGCGAAACGCCGAAAAATCCA
AACTGATTATGGTAATAGTTGCACATTCCGAACAAATACGAATGGAGCGT
TCACATCTGTCTCGAACTTTCATTATTTGTCTTGGGGTAAACACGTATTT
ATTCGTTTACAACTCTGTGAATGGTCACTCTACAGACGGTCACCAGGTGG
TCGTATACCTGGCGAACAGTCACACATGCAGGTCCTGTTTATTTTCCGGA
TAGTACTGTACTGTACTGTACTGTACAGATTGAATACTCTATCTTCCCGA
GCTTTCCGATGCTCTATTGTATACCGAGTTCCCTGCATATTTTTCGCGTC
ACATGGACATCTTCCCCGACTCCAACAGGTACAGTATTCATTCCAGATTT
CTCGTAATTGTCCATGTCTTGTATTCGTATTTGTCGGACGTACCTGTTTT
TTTTTTTTCCAATATTTAGGTCGGAACCACCGCTGCCTCCGCCGCGGCGG
CTGCGGCAGCAGCTGCTGCAAACGCCGCGCGTCCGGTGGAATGGTGGCAA
CAGGACGGCTGGAGGGTCGGCGTGCCCAACCCTCCCCAACCCCCCGTTGG
GGCCAATGACCCGTCCGGGAACAGTAGCGGTGGAGGTACTGGAGAGGCGG
ACGGGCAGAGAGAGAGTGGTGGGGTTGGGTGTGGGGGCCCCAAGGGTAAT
GCCTTGAGCCAGATGCTCGATGAGGACCCTTCGGAGCGCCGCCGGAAGTG
CGACCACCCTGAGTGCTCGCAGATGGCGACGCGCGGTTTTATCTTACCAC
GGTTATGCGGGATGCACAGGGAGACCAGGGTGAGAGACAGACTGATAGAT
GGAAGATGTGGACAGATAGACACAGGCAGGCAGACAGATAGACAGACAGC
ACAGAGACAAGAGCAGATAGACACAGACAGAGGAGAAGGGAAAGGTTTTT
GTTTTTGACGTTTCTAGAGGCTATTTGTTATTTTGGTTGTCAAGTTATTT
TCTCTGGATCCTGATAGACTTTCATGTGTTTCAATACTATTTAGCTAGAA
GTAGAAGGTAAATCCGACGCCGGTAAGACCCGTTTTTTTTTTTTTTTAAT
TGTCAGCCATGGCGTGAGTAACTCTGGGGAGTCTGAAGAACTCAGACCCG
CAGTCAGGGGAAGACAACGTTTTAGTATACTGTGGAATATTTTTATACAC
TGGTCTATTCTTGAACTGATTATATATTAAAATTGGTCTCGTTATGGGGT
AATCCGTAGCGGTCTGGACAATGACATATTGGTAAAGTTAAACATGCGCG
CCACAACAAGGGGATTTAACAATGTTTGACCCTGGGTAGGACAACGGCGT
CCAGGTCACCTTTTTTTTTTTTTTTGAATCTTGACTGAACCACGAGAATT
TACGACTGTTGCTCTCAATACCCTCCTCAGACAGGGTGAAAGATCACTCC
CTTTTCGCCTGAACAATCGCCCCCATTGGCGTTTTCCAGCATGTAAGCTA
ACGCCTCTTGTGTAAAGAATGCCCAAAAATCAGATTCCAAGGGACAGATT
TTGAGGTGTGAGCCCCTTAAAGATTTTGATTTTTTCTTTTATTTTTTTCT
CGTGTTATTTGTCATTGGATACCAATACCACGACCACCACCATTACTACT
ATGAATAGTACTGATATCTGACATTTCGCTTTTGATGCTTCCAATGTTCG
GTGGACTGGACTCGTGCTAGTGCGACTTGTGACCTATCCCTATCCCTCCA
TCTACCTACCTATCCACCGTCGTGTTGTCATGTAAAACTAATAGCGATCT
CTAATATCTTTTGTTTTTATAAACCGTGCGCAGATGCTGCGGATTGTGCC
ATCAGAGGTGGACTCCGGGTCCGACTGGGGCTCTGACACCGAAGCGGATG
CTCGAGACTACGGCCGTTTCAAACGCATCGAGAACGCCGATCAGGACACA
ATCAGGTACTTTTTCTTGTTGATTTCAGAGGGTGGGGGGCATAAATAAGG
TACGTACTTTGTACATGAAGCACAGCCGTAAGTTTGTCCATTTACCCATA
TTTGGTAAATGTTTTTCGGATTCTCCCCTGTCATGAAATAGTTGAAAAAA
AAAAAAAAAAAGGACGATATTTTTTGCTCGGTTAAAAACCCCAAACTGAA
CCGACCCAAGCAAATCGCCGGTTATCATGTCATTGCTGCTAAGGTGAATA
ATAGTATTAGCTGATAGAAATGAAGTGCACTAGTTGGATCGGTGTCCAGG
GAGAGCTGATGGAGATATTGACCAAGACCTCAGTACAGACAGTTGTGTAG
AGCAGTGGCATAAAAACCAAAGACTAGCCGCGTGGCGGGAGTGATTATTC
AAACATTTCGGGCAGATGTAACCAATCAGAATTTCTGTTATTCTCCCTCC
CCCCCCAGCCCCCCGCCTGAGAATAACGCCTCCAAAATACTCGCGTTTTT
ATTATGTCATCATGTTGTCCTCGGTCAATTTTCAAAGGATAAGTAAACAG
CATATTGGTGAAATGGGGACCCAACCTTGAGATGGGGACCCTGGTTTATA
TTGGAAATAGCCTATATCCTGAAGATCCGAAATTGATTTTCAGGAAACAG
CCTATTTCCAATATAACCCAGGGTCCCCATCTCAAAGTTGGGTCCCCATT
TCACCAATATGCTGTTAGTAGTCGAAGAGTGTTCAGATTCTGAATATTTA
TTTTTGTTTTGTCTTGTGGCCGTTGTCGTATTTTCTACGTTGTTTACTCT
CATGCTTAAACCCTCTCTCCTGCCTGGCCCCGCCCCACTTCACTCCACCC
CGCGATGCCCGGGTGCCCAATATTTCATATACATGCGATGGTCTTTCATC
TCAGGCGCGTTCTGAAGGTTTACCCGCCGAGATGTCCAAAGATGAAGGAT
AAGATCCGGCAGGATTTTATCAGCGCCCCCGTGTCTCCTCCTTCAGGCTC
GACAGCGGCACCAGCAGCACCACTACCAGCAGCACCAGCACCAGCACCAG
CACTAGCACCGCAACCACCATCCTCGTCGCCATCGGCACCGGACTGGGGA
ACACGCGAAGCTCCGCCACCCTCTCCCGCCGCTAGTTCCAGTCGAGGGTC
ATCTGTCAATGGCAATACCACCCCCCGCCAAAGGGGCGGCGGGGGAGGAG
GCGGACGCGGGAGGAGAAGCCCCGGGGTTTCGCGCAAACCAGGGCGTCCA
CCTGGAGCAACTGCGGCGGCGGGTGGGGAAAGAAGAGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig10018:3681..8520-

>mRNA_H-paniculata_contig10018.27.1 ID=mRNA_H-paniculata_contig10018.27.1|Name=mRNA_H-paniculata_contig10018.27.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2052bp|location=Sequence derived from alignment at H-paniculata_contig10018:3681..8520- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGCAAGGAGTGAGGTTGTTGGAAACGATGGTCAGAGCGAGCAAGGAGT
GAGGTTGTTGGAAACGATGGTCAGAGGCCCATTGCAAGCGACCATGGCCG
TAGCACTTCACCATATGGTTCCGGCCTGTCACCCCCTGGCTATATTACGG
CTAACAATGGAGGAGCGGGGGCTGCTGGCGGTGCCTATCCAGGGCAGGCC
CATTGCAAGCGACCATGGCCGTAGCACTTCACCATATGGTTCCGGCCTGT
CACCCCCTGGCTATATTACGGCTAACAATGGAGGAGCGGGGGCTGCTGGC
GGTGCCTATCCAGGGCAGGTCGGAACCACCGCTGCCTCCGCCGCGGCGGC
TGCGGCAGCAGCTGCTGCAAACGCCGCGCGTCCGGTGGAATGGTGGCAAC
AGGACGGCTGGAGGGTCGGCGTGCCCAACCCTCCCCAACCCCCCGTTGGG
GCCAATGACCCGTCCGGGAACAGTAGCGGTGGAGGTACTGGAGAGGCGGA
CGGGCAGAGAGAGAGTGGTGGGGTTGGGTGTGGGGGCCCCAAGGGTAATG
CCTTGAGCCAGATGCTCGATGAGGACCCTTCGGAGCGCCGCCGGAAGTGC
GACCACCCTGAGTGCTCGCAGATGGCGACGCGCGGTTTTATCTTACCACG
GTTATGCGGGATGCACAGGGAGACCAGGGTCGGAACCACCGCTGCCTCCG
CCGCGGCGGCTGCGGCAGCAGCTGCTGCAAACGCCGCGCGTCCGGTGGAA
TGGTGGCAACAGGACGGCTGGAGGGTCGGCGTGCCCAACCCTCCCCAACC
CCCCGTTGGGGCCAATGACCCGTCCGGGAACAGTAGCGGTGGAGGTACTG
GAGAGGCGGACGGGCAGAGAGAGAGTGGTGGGGTTGGGTGTGGGGGCCCC
AAGGGTAATGCCTTGAGCCAGATGCTCGATGAGGACCCTTCGGAGCGCCG
CCGGAAGTGCGACCACCCTGAGTGCTCGCAGATGGCGACGCGCGGTTTTA
TCTTACCACGGTTATGCGGGATGCACAGGGAGACCAGGATGCTGCGGATT
GTGCCATCAGAGGTGGACTCCGGGTCCGACTGGGGCTCTGACACCGAAGC
GGATGCTCGAGACTACGGCCGTTTCAAACGCATCGAGAACGCCGATCAGG
ACACAATCAGATGCTGCGGATTGTGCCATCAGAGGTGGACTCCGGGTCCG
ACTGGGGCTCTGACACCGAAGCGGATGCTCGAGACTACGGCCGTTTCAAA
CGCATCGAGAACGCCGATCAGGACACAATCAGGCGCGTTCTGAAGGTTTA
CCCGCCGAGATGTCCAAAGATGAAGGATAAGATCCGGCAGGATTTTATCA
GCGCCCCCGTGTCTCCTCCTTCAGGCTCGACAGCGGCACCAGCAGCACCA
CTACCAGCAGCACCAGCACCAGCACCAGCACTAGCACCGCAACCACCATC
CTCGTCGCCATCGGCACCGGACTGGGGAACACGCGAAGCTCCGCCACCCT
CTCCCGCCGCTAGTTCCAGTCGAGGGTCATCTGTCAATGGCAATACCACC
CCCCGCCAAAGGGGCGGCGGGGGAGGAGGCGGACGCGGGAGGAGAAGCCC
CGGGGTTTCGCGCAAACCAGGGCGTCCACCTGGAGCAACTGCGGCGGCGG
GTGGGGAAAGAAGAGGGGCGCGTTCTGAAGGTTTACCCGCCGAGATGTCC
AAAGATGAAGGATAAGATCCGGCAGGATTTTATCAGCGCCCCCGTGTCTC
CTCCTTCAGGCTCGACAGCGGCACCAGCAGCACCACTACCAGCAGCACCA
GCACCAGCACCAGCACTAGCACCGCAACCACCATCCTCGTCGCCATCGGC
ACCGGACTGGGGAACACGCGAAGCTCCGCCACCCTCTCCCGCCGCTAGTT
CCAGTCGAGGGTCATCTGTCAATGGCAATACCACCCCCCGCCAAAGGGGC
GGCGGGGGAGGAGGCGGACGCGGGAGGAGAAGCCCCGGGGTTTCGCGCAA
ACCAGGGCGTCCACCTGGAGCAACTGCGGCGGCGGGTGGGGAAAGAAGAG
GG
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