mRNA_H-paniculata_contig14195.2546.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14195.2546.1
Unique NamemRNA_H-paniculata_contig14195.2546.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig14195.2546.1 vs. uniprot
Match: D7FGT3_ECTSI (ABC1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGT3_ECTSI)

HSP 1 Score: 360 bits (923), Expect = 4.250e-117
Identity = 186/229 (81.22%), Postives = 209/229 (91.27%), Query Frame = 1 
Query:    1 SEIFSVEKIARSFLSEFTNTLSKGKDAKWTSELSKEEKGRLRRERRAKLGEDLLSVSGDVPFKFPPTFTFVFRAFTSLDGIGKGLDSKYDLTRLAQPYLQELLDVRDGSFALSVAKTFAKKVGWRPEDLEAVVKSPRNVAYVEGITRKLEQGDLKLRVRVLESERAFERLQLTQTNMFNVMAFGTLLNAALIITSIIPSGAALTLPAKFCWGLAGFVGLRIPVGLFKVR 687
            S+  SVEKIARSFL EFTNTL++G+D KWT+EL+KE+K RLR+ERRAKLGEDLLSVSGDVPFKFPPTFTFVFRAFTSLDGIGKGLD+KYDLTRLAQPYL+ELLDVRDGSFALSVAKTF KKVGWRPEDLEAVVKSPRNVAYVE ITRKLEQGDLKLRVRVLESERAFERL+LTQT+M++ +AF T LNAALI+++ + +G+ L LP +  W LAG  GLRIPVGLFK+R
Sbjct:  519 SDRISVEKIARSFLGEFTNTLNQGQDGKWTAELTKEDKTRLRKERRAKLGEDLLSVSGDVPFKFPPTFTFVFRAFTSLDGIGKGLDTKYDLTRLAQPYLKELLDVRDGSFALSVAKTFVKKVGWRPEDLEAVVKSPRNVAYVEDITRKLEQGDLKLRVRVLESERAFERLELTQTSMYDAIAFSTFLNAALILSATLSAGSPL-LPVRVAWTLAGVFGLRIPVGLFKIR 746
[Close]
BLAST of mRNA_H-paniculata_contig14195.2546.1 vs. uniprot
Match: A0A7S0XEN1_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEN1_9STRA)

HSP 1 Score: 247 bits (631), Expect = 2.620e-75
Identity = 124/225 (55.11%), Postives = 167/225 (74.22%), Query Frame = 1 
Query:   13 SVEKIARSFLSEFTNTLSKGKDAKWTSELSKEEKGRLRRERRAKLGEDLLSVSGDVPFKFPPTFTFVFRAFTSLDGIGKGLDSKYDLTRLAQPYLQELLDVRDGSFALSVAKTFAKKVGWRPEDLEAVVKSPRNVAYVEGITRKLEQGDLKLRVRVLESERAFERLQLTQTNMFNVMAFGTLLNAALIITSIIPSGAALTLPAKFCWGLAGFVGLRIPVGLFKVR 687
            S+EK+AR FL+EF   +  GK   WT++L+ EE+  +RR+RR +LG DL SV  DVPFKFPPTFTFVFRAFTSLDGIGKGLDSKYDL RLAQP+L+EL+D+RDGS  LS+ K++ KK+GWRP D+   + SPR +A V  +  K+EQGDLKLRVRV+ESERAF+R+++ Q NM   +A    +N  LI+++I      ++L AK  +GL G  G+++P+G  K++
Sbjct:  359 SIEKVARVFLNEFNQGVESGK---WTNQLTPEEQKEIRRKRRVQLGADLFSVGNDVPFKFPPTFTFVFRAFTSLDGIGKGLDSKYDLPRLAQPFLKELIDLRDGSAFLSLLKSYGKKLGWRPIDINNAITSPRQIANVNSVITKMEQGDLKLRVRVIESERAFQRMEIVQNNMALAIAASGFINMGLILSTIGSPQGQMSLAAKALFGLGGLFGIQLPIGFIKLK 580
[Close]
BLAST of mRNA_H-paniculata_contig14195.2546.1 vs. uniprot
Match: A0A7S2TV21_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TV21_9EUKA)

HSP 1 Score: 245 bits (625), Expect = 1.110e-74
Identity = 133/230 (57.83%), Postives = 166/230 (72.17%), Query Frame = 1 
Query:    1 SEIFSVEKIARSFLSEFTNTLSKGKD-AKWTSELSKEEKGRLRRERRAKLGEDLLSVSGDVPFKFPPTFTFVFRAFTSLDGIGKGLDSKYDLTRLAQPYLQELLDVRDGSFALSVAKTFAKKVGWRPEDLEAVVKSPRNVAYVEGITRKLEQGDLKLRVRVLESERAFERLQLTQTNMFNVMAFGTLLNAALIITSIIPSGAALTLPAKFCWGLAGFVGLRIPVGLFKVR 687
            S+  SVE+I+R FL EF  TL+  +D A+W ++++ EEK  LR ERRAKLG DLLSV  DVPFKFPPTFTFVFRAFTSL+GIGKGLD KYDLTRLA PYL+ELL +R+GS   +V K +A+K+GWRPED+ AVV  PR VAY+  + +KLEQGDLKLR R LESERAFER QL Q+    ++    L NA + +T     GA   + ++  + LA F  L+ P+GL KVR
Sbjct:  330 SDRVSVERISRFFLGEFQKTLATNEDEAQWINQMTPEEKKALRAERRAKLGADLLSVGNDVPFKFPPTFTFVFRAFTSLEGIGKGLDPKYDLTRLAIPYLKELLTLREGSAVKAVVKQYAEKLGWRPEDINAVVTQPRQVAYMTNVIKKLEQGDLKLRTRSLESERAFERQQLVQSAQGKLIVASALANAGIALTM----GAGPLIASRLAFSLAVFFALQFPIGLLKVR 555
[Close]
BLAST of mRNA_H-paniculata_contig14195.2546.1 vs. uniprot
Match: A0A6T9YI57_BIGNA (Hypothetical protein n=1 Tax=Bigelowiella natans TaxID=227086 RepID=A0A6T9YI57_BIGNA)

HSP 1 Score: 233 bits (595), Expect = 9.480e-74
Identity = 129/230 (56.09%), Postives = 163/230 (70.87%), Query Frame = 1 
Query:    1 SEIFSVEKIARSFLSEFTNTLSKG-KDAKWTSELSKEEKGRLRRERRAKLGEDLLSVSGDVPFKFPPTFTFVFRAFTSLDGIGKGLDSKYDLTRLAQPYLQELLDVRDGSFALSVAKTFAKKVGWRPEDLEAVVKSPRNVAYVEGITRKLEQGDLKLRVRVLESERAFERLQLTQTNMFNVMAFGTLLNAALIITSIIPSGAALTLPAKFCWGLAGFVGLRIPVGLFKVR 687
            S+  SVE+I+R FL +F  TL    ++ KW ++LS EEK + R ERRAKLG DLLSV  DVPFKFPPTFTFVFRAFTSL+GIGK LD  YDLTRLA PYL+ELL++R+GS   +V K +A+K+GWR ED+ A+V  PR VAY+  + RKLE+GDLKLR R LESERAFER  + Q N   ++    LLN+A+ + S+  +  A+   A F  GLA F  L+ P+G  KVR
Sbjct:   29 SDRLSVERISRFFLEDFQKTLKASPEEEKWINQLSPEEKKKARAERRAKLGADLLSVGNDVPFKFPPTFTFVFRAFTSLEGIGKTLDKGYDLTRLAVPYLKELLELREGSVVRAVVKQYAEKLGWRKEDINALVTQPRQVAYISNVIRKLEKGDLKLRTRTLESERAFERSAMVQQNQGKLIVASALLNSAMAL-SMFSTAPAVASQAAF--GLAIFFALQFPLGALKVR 255
[Close]
BLAST of mRNA_H-paniculata_contig14195.2546.1 vs. uniprot
Match: A0A7S2V5C3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5C3_9STRA)

HSP 1 Score: 229 bits (585), Expect = 3.020e-73
Identity = 116/185 (62.70%), Postives = 148/185 (80.00%), Query Frame = 1 
Query:  133 RRAKLGEDLLSVSGDVPFKFPPTFTFVFRAFTSLDGIGKGLDSKYDLTRLAQPYLQELLDVRDGSFALSVAKTFAKKVGWRPEDLEAVVKSPRNVAYVEGITRKLEQGDLKLRVRVLESERAFERLQLTQTNMFNVMAFGTLLNAALIITSIIPSGAALTLPAKFCWGLAGFVGLRIPVGLFKVR 687
            RRAKLGEDLLSV  DVPFKFPPTFTFVFRAFTSLDGIGKGLD KYDLT+LAQPYL+ELL++RDGS + ++  T+AK++GWRPED+ ++V++PRNV YV  +TRKLEQGDLKLRVRVLESERAF RL + Q  +   +  G+  NA LI+TS+ P+ +AL   A+ C+ LA   G+++P+   K++
Sbjct:    1 RRAKLGEDLLSVGNDVPFKFPPTFTFVFRAFTSLDGIGKGLDPKYDLTKLAQPYLKELLELRDGSASAALVNTWAKRLGWRPEDIASLVQNPRNVQYVTDVTRKLEQGDLKLRVRVLESERAFARLDMVQGALAAAVLAGSFANAGLILTSL-PASSALA--ARACFALASVFGIQVPLTYLKLK 182
[Close]
BLAST of mRNA_H-paniculata_contig14195.2546.1 vs. uniprot
Match: A0A4D9D8Z7_9STRA (ABC1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8Z7_9STRA)

HSP 1 Score: 245 bits (626), Expect = 1.180e-72
Identity = 135/226 (59.73%), Postives = 169/226 (74.78%), Query Frame = 1 
Query:   13 SVEKIARSFLSEFTNTLSKGKDAKWTSELSKEEKGRLRRERRAKLGEDLLSVSGDVPFKFPPTFTFVFRAFTSLDGIGKGLDSKYDLTRLAQPYLQELLDVRDGSFALSVAKTFAKKVGWRPEDLEAVVKSPRNVAYVEGITRKLEQGDLKLRVRVLESERAFERLQLTQTNMFNVMAFGTLLNAALIITSIIPSGAALT-LPAKFCWGLAGFVGLRIPVGLFKVR 687
            SVEKIAR FL+EF +TL+ G   KW +EL KE + + R  RRA+LG DLLS+S D+PFKFPPTFTFVFRAFTSLDGIGKGLDS+YDLTRLAQP+L+EL+D+RDGS  LS+ K + KK+GWRP+DL AVV SPR VA +E   R+ EQGDLKLRVRVLESERAF+R+ + Q+ M N +     LNAA+++++   S   +  L  K  +G A   GL+IPV   K+R
Sbjct:  601 SVEKIARFFLTEFGSTLNTG--GKWVNELDKETQKQQRASRRAQLGADLLSLSTDLPFKFPPTFTFVFRAFTSLDGIGKGLDSRYDLTRLAQPFLKELVDLRDGSATLSLLKGWQKKLGWRPQDLAAVVTSPRKVAQIEDTLRRAEQGDLKLRVRVLESERAFKRIDIVQSTMVNAIMSSMFLNAAIMLSANAVSPTLVNRLFIKGLFGAATLFGLKIPVNYMKLR 824
[Close]
BLAST of mRNA_H-paniculata_contig14195.2546.1 vs. uniprot
Match: A0A7S0H9B0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H9B0_9EUKA)

HSP 1 Score: 238 bits (607), Expect = 5.120e-71
Identity = 128/232 (55.17%), Postives = 165/232 (71.12%), Query Frame = 1 
Query:    1 SEIFSVEKIARSFLSEFTNTLSKGKD---AKWTSELSKEEKGRLRRERRAKLGEDLLSVSGDVPFKFPPTFTFVFRAFTSLDGIGKGLDSKYDLTRLAQPYLQELLDVRDGSFALSVAKTFAKKVGWRPEDLEAVVKSPRNVAYVEGITRKLEQGDLKLRVRVLESERAFERLQLTQTNMFNVMAFGTLLNAALIITSIIPSGAALTLPAKFCWGLAGFVGLRIPVGLFKVR 687
            S+  SVE+I+R FL EF +TL+K  D   AKW ++L+ EEK ++R ERRAKLG DLLSV  DVPFKFPPTFTFVFRAFTSL+GIGKGLD+KYDLTRLA PYL+ELL++R+GS   ++ KT+A K+GWR ED+EA+V  PR VAY+  + +KLE+GDLKLR R LESERAFER  L Q+    ++    LLNA + +T      AA     +  +  A     + P+G+ K+R
Sbjct:  449 SDRVSVERISRFFLGEFQSTLAKNDDSEEAKWINQLTPEEKRKIRAERRAKLGADLLSVGNDVPFKFPPTFTFVFRAFTSLEGIGKGLDAKYDLTRLAVPYLKELLELREGSAVKALVKTYATKLGWRKEDIEALVTQPRQVAYMSKVIKKLERGDLKLRTRTLESERAFERTALVQSTQGKLLVASALLNAGIALTL----AAAPVAMTQAAFSAAALYAAQFPLGVLKIR 676
[Close]
BLAST of mRNA_H-paniculata_contig14195.2546.1 vs. uniprot
Match: A0A7S4D846_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D846_HETAK)

HSP 1 Score: 239 bits (610), Expect = 5.410e-71
Identity = 133/229 (58.08%), Postives = 171/229 (74.67%), Query Frame = 1 
Query:   13 SVEKIARSFLSEFTNTLSKGKDAKWTSELSKEEKGRLRRERRAKLGEDLLSVSGDVPFKFPPTFTFVFRAFTSLDGIGKGLDSKYDLTRLAQPYLQELLDVRDGSFALSVAKTFAKKVGWRPEDLEAVVKSPRNVAYVEGITRKLEQGDLKLRVRVLESERAFERLQLTQTNMFNVMAFGTLLNAALIITSII---PSG-AALTLPAKFCWGLAGFVGLRIPVGLFKVR 687
            SVEKIAR FL+EF+ T++  KD +W  EL KE+   +RR+RR  LG DLL+VS DVPFKFPP+FTFVFRAFTSLDGIGKGLD  YDLTRLAQPYL+EL+D+RDGS A+S  KT+ KK G RP DL +VVK PR+VAY+E   R++E+GDL+LRVRV+ESERAF+RL + Q NMFN++A    LNA L++ +     P+G  AL + A F    A   G+++  GL +++
Sbjct:  503 SVEKIARYFLAEFSGTVN-SKDGQWVQELDKEQAKEVRRKRRLALGRDLLTVSSDVPFKFPPSFTFVFRAFTSLDGIGKGLDPAYDLTRLAQPYLKELVDLRDGSAAISFLKTWGKKTGLRPTDLMSVVKEPRSVAYLEDTVRRMERGDLQLRVRVVESERAFQRLAVEQKNMFNLVAASGCLNAGLLLQATAAGTPAGQTALAVRAAFL--AAAAFGVQMGAGLLQLK 728
[Close]
BLAST of mRNA_H-paniculata_contig14195.2546.1 vs. uniprot
Match: A0A7S2Y0V3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0V3_9STRA)

HSP 1 Score: 201 bits (510), Expect = 6.210e-60
Identity = 109/223 (48.88%), Postives = 151/223 (67.71%), Query Frame = 1 
Query:   16 VEKIARSFLSEFTNTLSKGKDAKWTSELSKEEKGRLRRERRAKLGEDLLSVSGDVPFKFPPTFTFVFRAFTSLDGIGKGLDSKYDLTRLAQPYLQELLDVRDGSFALSVAKTFAKKVGWRPEDLEAVVKSPRNVAYVEGITRKLEQGDLKLRVRVLESERAFERLQLTQTNMFNVMAFGTLLNAALIITSIIPSGAALTLPAKFCWGLAGFVGLRIPVGLFKV 684
            VE++ R F+ EF +TL+        +++S E+  ++ R+RRA LG +LL+V  D P  FPP F FV+R+F SLDG+GKGL SKYDLT+ AQPYL+EL+D+RDGS  L+  KTFAK++GWRPEDL+AVV  PR +AY++   R+LEQGDLKLRVRVLE+E+A E+ Q+TQ+          +L + L+  +   SG  L         LA F   ++PVG+FK+
Sbjct:  114 VERVVRYFVKEFRSTLTLPTPE--VTDMSSEDIKKIIRQRRADLGAELLAVEKDFPLVFPPAFAFVYRSFASLDGVGKGLSSKYDLTKYAQPYLKELIDLRDGSVTLTAVKTFAKQLGWRPEDLKAVVTGPRKLAYIDDTLRQLEQGDLKLRVRVLEAEQALEKAQVTQST-----TLAAVLTSMLLQLAEGASGGGLISLRSLYSVLATFCAFKVPVGIFKL 329
[Close]
BLAST of mRNA_H-paniculata_contig14195.2546.1 vs. uniprot
Match: A0A1X6NWC1_PORUM (ABC1 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NWC1_PORUM)

HSP 1 Score: 206 bits (523), Expect = 1.750e-59
Identity = 114/225 (50.67%), Postives = 148/225 (65.78%), Query Frame = 1 
Query:   13 SVEKIARSFLSEFTNTLSKGKDAKWTSELSKEEKGRLRRERRAKLGEDLLSVSGDVPFKFPPTFTFVFRAFTSLDGIGKGLDSKYDLTRLAQPYLQELLDVRDGSFALSVAKTFAKKVGWRPEDLEAVVKSPRNVAYVEGITRKLEQGDLKLRVRVLESERAFERLQLTQTNMFNVMAFGTLLNAALIITSIIPSGAALTLPAKFCWGLAGFVGLRIPVGLFKVR 687
            SVEKI R F+S F  +LS G   K   E   E   RL       +G++LL+V  D PF FPP FTFVFRAFT+L+G+GKGLD  YDLT LA PYL+EL+D++DGS AL+V K+  KKVGWRP D+E  V +PR +AYVE   R++E+G+L+LRVRVLESERAF+R+++ + NM   +   TL   A+I T+   SG    L A+  W  AG    R+  GL K+R
Sbjct:  352 SVEKIGRYFISAFRTSLSAGNVRKSADEKRSELVARL-----TSIGDELLAVGEDQPFVFPPVFTFVFRAFTTLEGVGKGLDPSYDLTLLAAPYLKELVDLKDGSAALTVVKSGLKKVGWRPIDIEETVTAPRKLAYVERTLRRMEEGELRLRVRVLESERAFQRMRVVEGNMAVALVAATLCQLAVIYTT---SGGGYVLRARALWVAAGLAAARLAAGLLKLR 568
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14195.2546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGT3_ECTSI4.250e-11781.22ABC1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S0XEN1_9STRA2.620e-7555.11Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S2TV21_9EUKA1.110e-7457.83Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A6T9YI57_BIGNA9.480e-7456.09Hypothetical protein n=1 Tax=Bigelowiella natans T... [more]
A0A7S2V5C3_9STRA3.020e-7362.70Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9D8Z7_9STRA1.180e-7259.73ABC1 domain-containing protein n=2 Tax=Monodopsida... [more]
A0A7S0H9B0_9EUKA5.120e-7155.17Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S4D846_HETAK5.410e-7158.08Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2Y0V3_9STRA6.210e-6048.88Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1X6NWC1_PORUM1.750e-5950.67ABC1 domain-containing protein n=1 Tax=Porphyra um... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14195contigH-paniculata_contig14195:647..5392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score362.1
Seed ortholog evalue1.9e-97
Seed eggNOG ortholog2880.D7FGT3
KEGG koko:K08869
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001
Exons5
Model size687
Cds size687
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14195.2546.1prot_H-paniculata_contig14195.2546.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14195 647..5392 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929128.3470056-CDS-H-paniculata_contig14195:646..8621622929128.3470056-CDS-H-paniculata_contig14195:646..862Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14195 647..862 -
1691480741.8932402-CDS-H-paniculata_contig14195:646..8621691480741.8932402-CDS-H-paniculata_contig14195:646..862Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14195 647..862 -
1622929128.3664784-CDS-H-paniculata_contig14195:1478..15861622929128.3664784-CDS-H-paniculata_contig14195:1478..1586Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14195 1479..1586 -
1691480741.9051979-CDS-H-paniculata_contig14195:1478..15861691480741.9051979-CDS-H-paniculata_contig14195:1478..1586Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14195 1479..1586 -
1622929128.3830025-CDS-H-paniculata_contig14195:2501..26011622929128.3830025-CDS-H-paniculata_contig14195:2501..2601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14195 2502..2601 -
1691480741.9146175-CDS-H-paniculata_contig14195:2501..26011691480741.9146175-CDS-H-paniculata_contig14195:2501..2601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14195 2502..2601 -
1622929128.4007716-CDS-H-paniculata_contig14195:3323..34811622929128.4007716-CDS-H-paniculata_contig14195:3323..3481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14195 3324..3481 -
1691480741.9277842-CDS-H-paniculata_contig14195:3323..34811691480741.9277842-CDS-H-paniculata_contig14195:3323..3481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14195 3324..3481 -
1622929128.424416-CDS-H-paniculata_contig14195:5287..53921622929128.424416-CDS-H-paniculata_contig14195:5287..5392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14195 5288..5392 -
1691480741.9394982-CDS-H-paniculata_contig14195:5287..53921691480741.9394982-CDS-H-paniculata_contig14195:5287..5392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14195 5288..5392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14195.2546.1

>prot_H-paniculata_contig14195.2546.1 ID=prot_H-paniculata_contig14195.2546.1|Name=mRNA_H-paniculata_contig14195.2546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=229bp
SEIFSVEKIARSFLSEFTNTLSKGKDAKWTSELSKEEKGRLRRERRAKLG
EDLLSVSGDVPFKFPPTFTFVFRAFTSLDGIGKGLDSKYDLTRLAQPYLQ
ELLDVRDGSFALSVAKTFAKKVGWRPEDLEAVVKSPRNVAYVEGITRKLE
QGDLKLRVRVLESERAFERLQLTQTNMFNVMAFGTLLNAALIITSIIPSG
AALTLPAKFCWGLAGFVGLRIPVGLFKVR
back to top

mRNA from alignment at H-paniculata_contig14195:647..5392-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14195.2546.1 ID=mRNA_H-paniculata_contig14195.2546.1|Name=mRNA_H-paniculata_contig14195.2546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4746bp|location=Sequence derived from alignment at H-paniculata_contig14195:647..5392- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCGAAATTTTCAGTGTGGAGAAAATTGCGAGGTCGTTCCTATCGGAGTT
CACGAACACGCTCTCCAAGGGCAAAGATGCGAAGTGGACATCGGAACTCA
GCAAGGTATACACAGTGCGTTCAAAACGTCATCGTTTCTTGTCACGAGAT
CGTTGGAGAAGAGCAACGTAAGACAGCGTCTGTCGATGATACCGTTGACC
CTCTTTTAGATATTAGCAACATGGATGAAATTTAAAGTCGCGTGGGCGAA
GCACGCGGCGAAGTTGCTCGCTCGTGTCGCTAATCTGACAAGAGGATAGC
TTTCGTCATCACAATTACGTTTTGCGAATTTAGACCTGCTACGGATGGGT
GCTCGTCACCGCATTTTTGGGGGAATTTTTCCGAGATTATTACGGATTTT
GGAATATGTAATTGGGTTGCGGTGCTGCGGTGGTACTACCAGTGCCAAAG
TCCCACAAGAAAATTGCTGTGCATGGATACGACAGGAAAATGTCCGACGT
TGGGGGAGGCGTGAAAAAATCACTAATAGAGTAGGAGGAGACTGATCGAT
TTTTTGAGTGAATCGTGCGAATGATTTTGCGTGGATAGATCGGGATGATG
TCTATGATCCGTACGTGTTTGACCACGAGCGATCCGCGCGATCCGAGTCG
TTGATTTTTTTATTTAGTATCACATGTTTGAATATTCTAAGAAATCGTCG
TTCAAAGGAACGTTGCACGATGAACGAGTTCCCACGTTCCCATCCCACAC
CCTAGCTTGCTCAAGGGCCACTACTACAAGAGAATATTTATGTCCATCCC
ACTCTCTCCGTCTTCCCGAGGACGCATGGTCAAAGGTCTAACATTAACGG
CGTATCAAAAATGAGTCTACTGGCCCAGCCCACCCTCGCGACAACCCTCT
CGTTGGTTTATAACCGAAGTGTTGGTTGTTGACGAATACCAGCAAAGGAG
CTTACGAGAGAAGAGATGGGCGGAAATCATGGGAAGCAATTCATTCAATC
AGGTTTAGGCGTTGTGTGATATACTCCCGAGTAGCTATGTATGTCGCCGC
ACTGTAGGCAGTGGCTTCACATGTGACCCACCCACCTTTCCTACGGTGTT
TTGGAACGATCCTCAACCATTATGGACGCCGGATTAGTCTATTTAGAGTA
GATTATTTTGATTAGACTATTTTGATTAGACTATTTAGAGTAGACTATTT
CAGGAGCAAATAGTAAAAGTGAATATAATATTATCGTAGTGAAAGGTTTT
CACTCCCGGACGAATATGAATGCTTGTGCTTGAAGCACTCTCGCGAGAGT
TGAAATTATGTGCCTGAAGGGTAAGCATGTGCGGGAGGGCACATAGACTA
CAGTATTAAGCTCTTGCTTATTAGCAGGATGAACATGCTCATGCTGAAAC
TCGAGGCATATACCTTTTCATTTCCATTCCGAATGCTTGAAATATTCATG
TTCGTCTGGGGGGGTGTTATAATGATGGTGTTGGTTCCCCGCCCACTGTT
TTTTTTTTTTTCTTATTTTTGCTTGAAATCTTGAAAATAGATTGGAATTC
CAGCAAATGTAAAATTTTGCTTTTTTATGTTTTTCCGATTATTTTCATTC
AATTTTGACGTGTTGCTGGGAGCAGGGGTGATACAAAAGAACAGGGGAGA
CAAATTACCCACGTTGGTAACGGGGCTCAGGTCTGTTTAGACGTGGCTAC
TCTTTTTCTTTTTTAAGGTGCAGAGGCCTTTAACACGCTGGGAATTTGTT
GAGTTTTTTTTTTTTTTTAATTCAAGCCGTGAATGTATCTGTTGATTCCC
GCCCTTCTCGCTCACCAGATGTTCCATGTGCTTGTAGATTGACGACATCT
CAGATTTTTGGTGTTGTATAAGCGAGCCGGTATATTGCACGACGTGGTGA
TCTTTCCGCAGGAAGAGAAAGGGCGACTGCGAAGGGAACGCAGGGCGAAG
CTCGGGGAGGATCTGCTGTCGGTCTCTGGGGACGTGCCGTTCAAGTTTCC
GCCCACATTTACGTTCGTTTTTAGGGCGTTCACTTCTCTGGATGGCATCG
GAAAGGGCTTGGATTCCAAGTGAGAATTCGGGGTAAACGTTTCGGGACGC
AGCCCTCTGAAGTCTGCTTCCCGAGATCTGTTTTCGGGGCATTATACGTG
ACATTTGAGGAAAATAGGTTGTATCTCTAAAAACTTGGGACGCACATGTA
TTTTTCAGCACCCAGAAGATCTACTTATAGGCACTATTACGGAGGGATAT
AATAATCAGGGGCAAATTAGGAAATTGACATCTTGAGGTGTAAATCATGC
AATACGATATGCACCAATCGGTTGCTGCATGGCTGTGCAAGTGTTTTTTT
TTAGAGTGTGTTTTTGTTTTCAGCTAGAAACGAAAATCTGTAGACCAACG
GGAAAAAACAAAATTCAGTTTCCGAAAAACCAAAAAAAAATGCTCCTGAT
TATTATGTTTCTCCGTAATACTTCCCTGAAACGCTCGAAAAAACTTGGTA
TTTTCCACGCGAATTGGATTTAAATTCTGGAGGAGGTTCTCGAAAGTTAC
CGCGTACCGAAGGGGTTATCCTCTACATCTAAAGCCTAATATTACTTAGC
CCTCGTTCCGGATATTTTCTGCATTGGTAATGTTATATATATATCGGTAT
CACGCCACCGCCTGCCTTTCTGTTGAAGCTTTGCATTGTATCAAACTACT
GCTTTCCTTTCCGCGTCCTAGGCTATGCACGATATTTTCTTCTAAGAAAA
AGATGTTTTTTTACGGGTCGTTTTTTTTTTTTGTTTTCCAGGTATGATCT
GACGCGACTGGCACAGCCTTACCTGCAAGAGCTTCTGGACGTACGAGACG
GATCTTTCGCTCTATCCGTTGCTAAGACCTTCGCCAAAAAGGTGTTTTCT
GACGCGAGTTCATATTTTTTTTGTTTTGCGGAGGCCACTTGATATTTACG
GTTGGTTGAGCAATCAATCATTGAAGACATTGATTTCATAAATTATAATA
GCCTTGTAAATAATTATAAAAATTTAATTGCTAAAATTCATTATATTTTG
AAATATTCTTGTGTTCTAACTATTGCTTCTAAAATGAAATTAAAAACTAA
AAAAAAAGTTTTTCGTAAATATGGTAAAGAATTAACCATAACTGATGAAA
ACGGTAAAATTATAACTATGTATCCTTCAGTAAATTGTTCAGATTTTAAG
TGCGAAGAAAATAAAAATTAAATCTTTTAAATCTATCTCTTGTCTGGCCT
GTTGGGGCAAAAACGTTTGTAAAAAAAGCGAATTGTTTTGTTTGTTTGTC
CACCAATCTTTGTCTTTCATTTCCTTGCTTGCTTTCTTGGTGTGATTCGT
TTGTAATTTTTTTGTCGTTGTCTACATTATGTGCGCTCGTTTTTTGTTTG
TTTTTTTTAACCCCCGGAAGGCTGAGGCAAAAGCCTTTACCGATGCTTCC
ATACCGAAGTATTTTACCAAAGCATTTCTACATTTCCTTTAACAGAACAG
AGTTATTTATTCCTCTGCGGGGTAGGCGCCACCCCGGTTCGGCCGAACCA
AGTAAGCTGCGCTCATTTTTGTTTTCTTTTGCCTTGATTTGATATGCCAT
GCTATGCCATGCTATGCCCTGATTTGCTCTGCTATGCTCTGTTTTGCCTT
CCTTTGCCCTGTCTTTCCTTTGCTTTGTTTAACGCCTCACCCGACCAGTA
CATGTTTTGATACATGCCCCCCATTTATTCACTTTGGCTCATAAGTGTGC
ACAGCTCTAGATTCCCAACCCTCCCCCCCGCCGCATCTCGCTGCTGCCAA
TCTAAGGTGGGCTGGCGACCTGAAGATCTGGAGGCTGTGGTGAAGAGCCC
GAGAAACGTAGCTTACGTGGAGGGGATCACACGAAAATTGGAGCAGGGTG
ACCTCAAGCTTCGGGTGCGTGTTTCGTTGGAATGTGTTGGGTATATCGGG
GCCGATACAGTACTGATATATCGTGTATGGGCGATACGACGGCATTTCGG
TGTTTCGCCTCTCATGCCATGGAGACCATCTAATATAGTGTATGCATGTG
TGATAATCACCCGATAGATTTTTTGGTTTGATACGAGAGAGTAGGTGAAG
CCAACACGCATAATTTTCTGGATTCGGCGAAGCCCCCTTTATCCGTCTAA
GGGAGCGCTAGCTGTTAGACTTCCGCTAGGGCGCTCACCTGGTGCTTCGC
GCTGTCGGCTCGCTTTGCTCGCACCGATACACTTACCGATGTATCGGTAA
TGTACCGTTATCGTTTTGAACGACCGATGCACAGCCGTAGTGTGGTTTGT
CTATCCAGTGCTATAATGTGAGGGAATCTGCTCAGCCCGTGTCCCGCCAT
TCATTTGGGATGAGGTTCCGCAGTCATGGTGTATGTGACTCAATCGAATA
AATGAAGTATTAAGCTTTCAACCACGCCCACAAGGATCGCAAATGGGTAC
TGGAGCATGATCAGGTGGTCGGGCCTTGGTTACGTCGTTAACCTAACCCC
CTCTACGCGTCTTTGTTTTTTGTTTCCCAGGTGCGGGTGCTGGAGTCCGA
GCGCGCGTTCGAGCGCTTGCAGCTGACTCAGACAAACATGTTCAATGTCA
TGGCGTTTGGGACGTTGTTGAACGCAGCGCTGATCATCACCTCTATCATT
CCGTCGGGCGCGGCGTTGACGCTCCCCGCGAAGTTTTGCTGGGGCTTGGC
AGGCTTTGTTGGCCTTCGGATACCAGTGGGGTTGTTCAAGGTACGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig14195:647..5392-

>mRNA_H-paniculata_contig14195.2546.1 ID=mRNA_H-paniculata_contig14195.2546.1|Name=mRNA_H-paniculata_contig14195.2546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1374bp|location=Sequence derived from alignment at H-paniculata_contig14195:647..5392- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCGAAATTTTCAGTGTGGAGAAAATTGCGAGGTCGTTCCTATCGGAGTT
CACGAACACGCTCTCCAAGGGCAAAGATGCGAAGTGGACATCGGAACTCA
GCAAGTCCGAAATTTTCAGTGTGGAGAAAATTGCGAGGTCGTTCCTATCG
GAGTTCACGAACACGCTCTCCAAGGGCAAAGATGCGAAGTGGACATCGGA
ACTCAGCAAGGAAGAGAAAGGGCGACTGCGAAGGGAACGCAGGGCGAAGC
TCGGGGAGGATCTGCTGTCGGTCTCTGGGGACGTGCCGTTCAAGTTTCCG
CCCACATTTACGTTCGTTTTTAGGGCGTTCACTTCTCTGGATGGCATCGG
AAAGGGCTTGGATTCCAAGAAGAGAAAGGGCGACTGCGAAGGGAACGCAG
GGCGAAGCTCGGGGAGGATCTGCTGTCGGTCTCTGGGGACGTGCCGTTCA
AGTTTCCGCCCACATTTACGTTCGTTTTTAGGGCGTTCACTTCTCTGGAT
GGCATCGGAAAGGGCTTGGATTCCAAGTATGATCTGACGCGACTGGCACA
GCCTTACCTGCAAGAGCTTCTGGACGTACGAGACGGATCTTTCGCTCTAT
CCGTTGCTAAGACCTTCGCCAAAAAGGTATGATCTGACGCGACTGGCACA
GCCTTACCTGCAAGAGCTTCTGGACGTACGAGACGGATCTTTCGCTCTAT
CCGTTGCTAAGACCTTCGCCAAAAAGGTGGGCTGGCGACCTGAAGATCTG
GAGGCTGTGGTGAAGAGCCCGAGAAACGTAGCTTACGTGGAGGGGATCAC
ACGAAAATTGGAGCAGGGTGACCTCAAGCTTCGGGTGGGCTGGCGACCTG
AAGATCTGGAGGCTGTGGTGAAGAGCCCGAGAAACGTAGCTTACGTGGAG
GGGATCACACGAAAATTGGAGCAGGGTGACCTCAAGCTTCGGGTGCGGGT
GCTGGAGTCCGAGCGCGCGTTCGAGCGCTTGCAGCTGACTCAGACAAACA
TGTTCAATGTCATGGCGTTTGGGACGTTGTTGAACGCAGCGCTGATCATC
ACCTCTATCATTCCGTCGGGCGCGGCGTTGACGCTCCCCGCGAAGTTTTG
CTGGGGCTTGGCAGGCTTTGTTGGCCTTCGGATACCAGTGGGGTTGTTCA
AGGTACGTGTGCGGGTGCTGGAGTCCGAGCGCGCGTTCGAGCGCTTGCAG
CTGACTCAGACAAACATGTTCAATGTCATGGCGTTTGGGACGTTGTTGAA
CGCAGCGCTGATCATCACCTCTATCATTCCGTCGGGCGCGGCGTTGACGC
TCCCCGCGAAGTTTTGCTGGGGCTTGGCAGGCTTTGTTGGCCTTCGGATA
CCAGTGGGGTTGTTCAAGGTACGT
back to top