mRNA_H-paniculata_contig14186.2541.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14186.2541.1
Unique NamemRNA_H-paniculata_contig14186.2541.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14186.2541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14186contigH-paniculata_contig14186:4341..4885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size523
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14186.2541.1prot_H-paniculata_contig14186.2541.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14186 4511..4802 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929127.8536944-UTR-H-paniculata_contig14186:4340..45101622929127.8536944-UTR-H-paniculata_contig14186:4340..4510Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14186 4341..4510 +
1691480741.6554987-UTR-H-paniculata_contig14186:4340..45101691480741.6554987-UTR-H-paniculata_contig14186:4340..4510Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14186 4341..4510 +
1622929127.9493327-UTR-H-paniculata_contig14186:4802..48851622929127.9493327-UTR-H-paniculata_contig14186:4802..4885Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14186 4803..4885 +
1691480741.6860075-UTR-H-paniculata_contig14186:4802..48851691480741.6860075-UTR-H-paniculata_contig14186:4802..4885Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14186 4803..4885 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929127.8741856-CDS-H-paniculata_contig14186:4510..45341622929127.8741856-CDS-H-paniculata_contig14186:4510..4534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14186 4511..4534 +
1691480741.6665032-CDS-H-paniculata_contig14186:4510..45341691480741.6665032-CDS-H-paniculata_contig14186:4510..4534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14186 4511..4534 +
1622929127.9294653-CDS-H-paniculata_contig14186:4556..48021622929127.9294653-CDS-H-paniculata_contig14186:4556..4802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14186 4557..4802 +
1691480741.676443-CDS-H-paniculata_contig14186:4556..48021691480741.676443-CDS-H-paniculata_contig14186:4556..4802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14186 4557..4802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14186.2541.1

>prot_H-paniculata_contig14186.2541.1 ID=prot_H-paniculata_contig14186.2541.1|Name=mRNA_H-paniculata_contig14186.2541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
MPTFSESIDHQLPDRCVQTLGQSRERCSARRHLATGRICPPQRLHRIPPT
CNPAQEFDVHTFVDSSRSSATPMDTTRFCMMFRVCFMCT*
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mRNA from alignment at H-paniculata_contig14186:4341..4885+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14186.2541.1 ID=mRNA_H-paniculata_contig14186.2541.1|Name=mRNA_H-paniculata_contig14186.2541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=545bp|location=Sequence derived from alignment at H-paniculata_contig14186:4341..4885+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGAGTACGTTGGTCTGTGTGATATTTTGTTTAGCGCACTTGTCCCCGA
AAAAATTAGCGGTGCAATTGCATTCTTGATTTCATTCAAATGTCCTTAGA
CGCACATGGAGTCTTCACCTTTCAGACAGTACAGAAAGCAGCGGAATAAT
ATTTGTTTTTTACATGCTAAATGCCAACATTCTCAGAGAGTATAGTGATA
AATGTTACTGTCGAAGGATCACCAACTACCAGATAGATGTGTTCAAACAC
TGGGGCAATCAAGAGAAAGATGCAGCGCTAGGCGACACTTAGCGACAGGT
AGAATATGCCCCCCGCAAAGACTACACAGAATTCCTCCAACGTGCAATCC
TGCCCAAGAATTCGACGTACATACTTTCGTTGACTCTTCGCGTTCTTCTG
CGACACCGATGGATACAACCCGATTTTGCATGATGTTCCGAGTGTGCTTC
ATGTGCACATAACTAAAAACAACGTAACCGGGAGAGTTGAATAGGGGTGT
CTGCTCCCCGGCGCACCCTCTTCGTGTCTCTGATTTTCTATCGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig14186:4341..4885+

>mRNA_H-paniculata_contig14186.2541.1 ID=mRNA_H-paniculata_contig14186.2541.1|Name=mRNA_H-paniculata_contig14186.2541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig14186:4341..4885+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAACATTCTCAGAGAGTATAATGCCAACATTCTCAGAGAGTATAGA
TCACCAACTACCAGATAGATGTGTTCAAACACTGGGGCAATCAAGAGAAA
GATGCAGCGCTAGGCGACACTTAGCGACAGGTAGAATATGCCCCCCGCAA
AGACTACACAGAATTCCTCCAACGTGCAATCCTGCCCAAGAATTCGACGT
ACATACTTTCGTTGACTCTTCGCGTTCTTCTGCGACACCGATGGATACAA
CCCGATTTTGCATGATGTTCCGAGTGTGCTTCATGTGCACATAAGATCAC
CAACTACCAGATAGATGTGTTCAAACACTGGGGCAATCAAGAGAAAGATG
CAGCGCTAGGCGACACTTAGCGACAGGTAGAATATGCCCCCCGCAAAGAC
TACACAGAATTCCTCCAACGTGCAATCCTGCCCAAGAATTCGACGTACAT
ACTTTCGTTGACTCTTCGCGTTCTTCTGCGACACCGATGGATACAACCCG
ATTTTGCATGATGTTCCGAGTGTGCTTCATGTGCACATAA
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