mRNA_H-paniculata_contig14178.2536.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14178.2536.1
Unique NamemRNA_H-paniculata_contig14178.2536.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14178.2536.1 vs. uniprot
Match: D8LCV6_ECTSI (Alanine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCV6_ECTSI)

HSP 1 Score: 322 bits (826), Expect = 2.240e-99
Identity = 180/250 (72.00%), Postives = 214/250 (85.60%), Query Frame = 1
Query:    4 AEDPDREEWASCSVEFCGGTHVSNTREAEAFVIAEESAVAKGIRRITALTGAPAKRAAANGEKLRVRAAEVAGMKGADLETALSAFRRDVDTATLSAAVKGKLRAEGDALLKRVAAEAKAAAALASEEGVNAAGKAAKEAADRGESVLIMEVMIGANSKAVKRVLDAVAKAAPGLSFMGFSAEGPGASGKLLVFSIVNGVAAESGLNADEWLRAALEACGGRGGGRPTSAQGQAASAAEMDKAIAAAKSF 753
            A+DP REEWA+ SVEFCGGTHV NTREAEAFVI EE+AVAKG+RRITA+TG+ AK A A GE L++RA EV+ +KG +LE A+++FRRDVD ATLSA VKG+LRA+GD LLKRVAAE+KAAAA A++ GV+AA KAAK+A + G++ ++M+V IGA+SKAVKRVLD V+K APGLSFMGFSAEGPGA+GKLLVFS V G AAE GL ADEWLR++L ACGGRGGGRPTSAQGQA  A EMDK +AAA +F
Sbjct:  867 AKDPSREEWATSSVEFCGGTHVGNTREAEAFVITEETAVAKGVRRITAITGSAAKEAVAAGEVLKLRAEEVSSLKGGELEGAVASFRRDVDGATLSAGVKGRLRAQGDKLLKRVAAESKAAAAAAAQSGVDAAVKAAKQAVEEGKTWVVMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAEGPGATGKLLVFSAVAGAAAEGGLKADEWLRSSLAACGGRGGGRPTSAQGQAPDAGEMDKGMAAAIAF 1116          
BLAST of mRNA_H-paniculata_contig14178.2536.1 vs. uniprot
Match: A0A835ZLN6_9STRA (Alanine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLN6_9STRA)

HSP 1 Score: 185 bits (469), Expect = 8.440e-50
Identity = 120/250 (48.00%), Postives = 153/250 (61.20%), Query Frame = 1
Query:   10 DPDREEWASCSVEFCGGTHVSNTREAEAFVIAEESAVAKGIRRITALTGAPAKRAAANGEKLRVRAAEVAGMKGADLETALSAFRRDVDTATLSAAVKGKLRAEGDALLKRVAAEAKAAAALASEEGVNAAGKAAKEAADRGESVLIMEVMIGANSKAVKRVLDAVAKAAPGLSFMGFSAEGPGASGKLLVFSIVNGVAAESGLNADEWLRAALEACGGRGGGRPTSAQGQAASAAEMDKAIAAAKSFAA 759
            DP R +WA  SVEFCGGTH++NT +A AF + +E AVAKG+RRITA+TGA A  A A G KL+   A  A +  A+L     A R+ +D AT+SAA+K KLR E +AL +R             + G              G   L+ EV IG +SKAVKRVLDAV  AAP L+FMG S    GA G+LL F++    A  +GL AD W+ AA+ ACGGRGGG+P++AQGQA S   +  A  A+K+FAA
Sbjct:  726 DPARADWARSSVEFCGGTHLANTADAAAFALVQEEAVAKGVRRITAVTGAEAAAALAEGAKLQADVAAAAKLADAELXXXAPALRQALDAATISAALKAKLRGEVEALQRRAXXXXXXXXXXXXDRGXXXXXXXXXXXXXXGARSLVTEVAIGGDSKAVKRVLDAVQAAAPELAFMGLS-PAAGADGRLLCFALCGDAARAAGLGADAWVAAAMAACGGRGGGKPSAAQGQAPSVEGLQAAADASKAFAA 974          
BLAST of mRNA_H-paniculata_contig14178.2536.1 vs. uniprot
Match: A0A7S1FYS4_9STRA (Alanine--tRNA ligase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FYS4_9STRA)

HSP 1 Score: 182 bits (461), Expect = 1.090e-48
Identity = 111/224 (49.55%), Postives = 147/224 (65.62%), Query Frame = 1
Query:   40 SVEFCGGTHVSNTREAEAFVIAEESAVAKGIRRITALTGAPAKRAAANGEKLRVRAAEVAGMKGAD--LETALSAFRRDVDTATLSAAVKGKLRAEGDALLKRVAAEAKAAAALASEEGVNAAGKAAKEAADRGESVLIMEVMIGANSKAVKRVLDAVAKAAPGLSFMGFSAEGPGASGKLLVFSIVNGVAAESGLNADEWLRAALEACGGRGGGRPTSAQGQA 705
            SVEFCGGTH++NT EAEAFV+ EE+AVAKG+RRITA+TGA A RA   G  L  R  E     G+D  LE    + R+D+D   +SA +K  LR   +AL K+ AA  KA  A+  +  +NA G+   +A  +G+ VL+ +V IGA+ KA  +V++AV   AP ++FMG S E   + GK+L F++V     E GL ADEW+R ALEA GGRGGG+P +AQGQA
Sbjct:  766 SVEFCGGTHLANTAEAEAFVLLEETAVAKGVRRITAVTGASALRAIEEGTALETRVGEAESFAGSDTDLEALAVSLRKDIDAREISAPLKADLRGRIEALQKKAAAAKKALLAMRVDRALNAVGEQILDARTQGQRVLVTKVDIGADGKAANKVVEAVRSLAPEMAFMGVSEEEEDSGGKVLCFTVVPEGMVEEGLRADEWVRNALEASGGRGGGKPNAAQGQA 989          
BLAST of mRNA_H-paniculata_contig14178.2536.1 vs. uniprot
Match: A0A7S4NG01_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NG01_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.610e-48
Identity = 112/243 (46.09%), Postives = 152/243 (62.55%), Query Frame = 1
Query:   40 SVEFCGGTHVSNTREAEAFVIAEESAVAKGIRRITALTGAPAKRAAANGEKLRVRAAEVAGM---KGADLETALSAFRRDVDTATLSAAVKGKLRAEGDALLKRVAAEAKAAAALASEEGVNAAGKAAKEAADRGESVLIMEVMIGANSKAVKRVLDAVAKAAPGLSFMGFSAEGPGASGKLLVFSIVNGVAAESGLNADEWLRAALEACGGRGGGRPTSAQGQAASAAEMDKAIAAAKSFAA 759
            SVEFCGGTH+SNT+EAEAF + EESAVAKGIRRITA+T   A  A   G+K   R A +  +     +DL+    + R+D+D A  SA +K  LR+  +++ K+     K A A   ++ +N      +EAA  G++ L++EV IGA+SKA ++VL+A  K AP ++FMG S E  G+ GKL  F+ V    AE G  ADEW+R+AL  CGGRGGG+P SAQGQA    ++   +  A  FAA
Sbjct:  132 SVEFCGGTHLSNTKEAEAFALVEESAVAKGIRRITAVTKGAALEAIEEGKKFEERVASLEQLDPSSTSDLDKQAGSLRKDLDAAYTSAPLKATLRSRIESIQKKAVDAKKRALAQRVDKVLNVVTAQIEEAAGAGKTALVLEVDIGADSKASQKVLNAAKKLAPDMAFMGLSEEENGSGGKLACFAAVPEAMAEGGFRADEWVRSALGVCGGRGGGKPDSAQGQAKECDDVGAVVKQADLFAA 374          
BLAST of mRNA_H-paniculata_contig14178.2536.1 vs. uniprot
Match: A0A7S4AXE9_9STRA (Alanine--tRNA ligase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AXE9_9STRA)

HSP 1 Score: 176 bits (447), Expect = 8.260e-47
Identity = 113/243 (46.50%), Postives = 154/243 (63.37%), Query Frame = 1
Query:   37 CSVEFCGGTHVSNTREAEAFVIAEESAVAKGIRRITALTGAPAKRAAANGEKLRVRAAEVAGMKGAD--LETALSAFRRDVDTATLSAAVKGKLRAEGDALLKRVAAEAKAAAALASEEGVNAAGKAAKEAADRGESVLIMEVMIGANSKAVKRVLDAVAKAAPGLSFMGFSAEGPGASGKLLVFSIVNGVAAESGLNADEWLRAALEACGGRGGGRPTSAQGQAASAAEMDKAIAAAKSFAA 759
            CS+EFCGGTH+SNT EAEAFV+ EE+AVAKGIRRITA+T   AK A   G+K+    A++  +      L+    A R+DVD   +SA +K  LR   + + K+V    KAA A      +N   +  + A       L++ V IGA+SKA ++VL+AV K AP ++FMG S E  G+ GKL+ F++V     + GL ADEW+R  LE CGGRGGG+P SAQGQA   +++D  +AA++SFAA
Sbjct:  749 CSIEFCGGTHMSNTAEAEAFVLVEETAVAKGIRRITAVTRDTAKEAIEEGKKIEGLVADLEALSAETEGLDKKAGAARKDVDAVFISATLKADLRNRIEGVQKKVNEVKKAALAQRVNLILNDIKEKVEAAISTDAKTLVLNVDIGADSKASQQVLNAVKKIAPDMAFMGLSEEEQGSGGKLMAFAVVPESLVDCGLKADEWVRGTLEVCGGRGGGKPGSAQGQAPECSDVDAVLAASESFAA 991          
BLAST of mRNA_H-paniculata_contig14178.2536.1 vs. uniprot
Match: K0SS72_THAOC (Alanine--tRNA ligase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SS72_THAOC)

HSP 1 Score: 172 bits (435), Expect = 1.660e-45
Identity = 113/243 (46.50%), Postives = 155/243 (63.79%), Query Frame = 1
Query:   37 CSVEFCGGTHVSNTREAEAFVIAEESAVAKGIRRITALTGAPAKRAAANGEKLRVRAAEVAGMKG---ADLETALSAFRRDVDTATLSAAVKGKLRAEGDALLKRVAAEAKAAAALASEEGVNAAGKAAKEAADRGESVLIMEVMIGANSKAVKRVLDAVAKAAPGLSFMGFSAEGPGASGKLLVFSIV-NGVAAESGLNADEWLRAALEACGGRGGGRPTSAQGQAASAAEMDKAIAAAKSF 753
            CSVEFCGGTH+SNT EAEAFV+ EE+AVAKGIRRITALT   A RA   G KL  R A +  ++     DL+    A R+DVD+A  SAA+K +LRA  + + K+     K   A   ++ +N      + A   G+  L++ + IGA+SKA ++V+ AV K AP L+FMG S E  G+ GK+L F+IV  GV  ++GL A+EWL+  L+  GGRGGG+P SAQGQA    +++  +  A+S+
Sbjct:  518 CSVEFCGGTHISNTAEAEAFVLTEETAVAKGIRRITALTREAAVRAIEEGSKLTDRTAALEAIRADDTPDLDKQAGALRKDVDSAEFSAALKAELRARIEQVQKKGIEAKKRLLAGRVDKCLNTVKADVETALAEGKRTLVLNLDIGADSKASQKVIKAVQKIAPDLAFMGISEEEAGSGGKILCFAIVPEGVTDDTGLKANEWLKDVLDFAGGRGGGKPGSAQGQAPECDDVEAVMEKAQSY 760          
BLAST of mRNA_H-paniculata_contig14178.2536.1 vs. uniprot
Match: A0A7S2E064_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E064_9STRA)

HSP 1 Score: 161 bits (408), Expect = 1.800e-45
Identity = 108/235 (45.96%), Postives = 144/235 (61.28%), Query Frame = 1
Query:   58 GTHVSNTREAEAFVIAEESAVAKGIRRITALTGAPAKRAAANGEKLR--VRAAEVAGMKGADLETALSAFRRDVDTATLSAAVKGKLRAEGDALLKRVAAEAKAAAALASEEGVNAAGKAAKEAADRGESVLIMEVMIGANSKAVKRVLDAVAKAAPGLSFMGFSAEGPGASGKLLVFSIVNGVAAESGLNADEWLRAALEACGGRGGGRPTSAQGQAASAAEMDKAIAAAKSFA 756
            GTH+SNT EAEAFV+ EE+AVAKGIRRITA+T   A  A A G K    V +AE       +L+    A R+D+D A +SA +K +LRA  +A+ K+  A  KAA A   +  +N   +    A    + VL++ V I A+SKA ++V+ A    AP ++FMG S E  G+ GKL+ F+IV     E G  AD W+RAALE+CGGRGGG+P SAQGQA   +++D  I  A  FA
Sbjct:    1 GTHISNTAEAEAFVLVEETAVAKGIRRITAVTKKAAAGAIAEGAKFEELVASAEELSADTPELDKKAGAMRKDLDAAFMSAPLKAELRARIEAIQKKGIASKKAALAARVDNVLNTVKEDISAAVAENKRVLVLNVDICADSKAAQKVMKAAKSLAPDMAFMGLSEEEAGSGGKLMCFAIVPDSLVEEGFKADVWVRAALESCGGRGGGKPGSAQGQAQQCSDVDAVINVANEFA 235          
BLAST of mRNA_H-paniculata_contig14178.2536.1 vs. uniprot
Match: A0A448Z8F1_9STRA (Alanine--tRNA ligase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z8F1_9STRA)

HSP 1 Score: 171 bits (433), Expect = 3.270e-45
Identity = 110/243 (45.27%), Postives = 150/243 (61.73%), Query Frame = 1
Query:   37 CSVEFCGGTHVSNTREAEAFVIAEESAVAKGIRRITALTGAPAKRAAANGEKLRVRAAEVAGM--KGADLETALSAFRRDVDTATLSAAVKGKLRAEGDALLKRVAAEAKAAAALASEEGVNAAGKAAKEAADRGESVLIMEVMIGANSKAVKRVLDAVAKAAPGLSFMGFSAEGPGASGKLLVFSIVNGVAAESGLNADEWLRAALEACGGRGGGRPTSAQGQAASAAEMDKAIAAAKSFAA 759
            CS+EFCGGTHV+NT EAEAFV+ EE+AVAKGIRRITA+T   AK A   G+K+     E+  +  K   L+    A R+DVD A +SA +K  LR   +           AA A   +  +       ++A  +    L++ V I A+SKA ++VL+AV K AP ++FMG S E  G+ GKL+ F++V     + GL ADEW+R  LE CGGRGGGRP +AQGQA   +++D  +AA++SFAA
Sbjct:  527 CSIEFCGGTHVANTAEAEAFVLVEETAVAKGIRRITAVTRDTAKEAIEEGKKIESMVVELEALDDKTEGLDKKAGAARKDVDAAFISATLKADLRNRIEGXXXXXXXXXXAALAARVDLVLKDVRTQVEDALSKDARTLVLNVDINADSKASQQVLNAVKKIAPDMAFMGLSEEEEGSGGKLMAFAVVPESLVDCGLKADEWVRGTLEVCGGRGGGRPGNAQGQAQECSDVDAVVAASESFAA 769          
BLAST of mRNA_H-paniculata_contig14178.2536.1 vs. uniprot
Match: A0A7S1YSQ0_9STRA (Alanine--tRNA ligase n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YSQ0_9STRA)

HSP 1 Score: 171 bits (434), Expect = 4.780e-45
Identity = 112/241 (46.47%), Postives = 151/241 (62.66%), Query Frame = 1
Query:   40 SVEFCGGTHVSNTREAEAFVIAEESAVAKGIRRITALTGAPAKRAAANGEKLR--VRAAEVAGMKGADLETALSAFRRDVDTATLSAAVKGKLRAEGDALLKRVAAEAKAAAALASEEGVNAAGKAAKEAADRGESVLIMEVMIGANSKAVKRVLDAVAKAAPGLSFMGFSAEGPGASGKLLVFSIVNGVAAESGLNADEWLRAALEACGGRGGGRPTSAQGQAASAAEMDKAIAAAKSFA 756
            SVEFCGGTHVSNT EAEAFV+ EE+AVAKGIRRIT +T   A  A A G+K    V +AE       +L+    A R+D+D A +SA +K +LRA  +A+ K+  A  KAA A   ++ +    +    A   G+  L++ V I A+SKA ++V++ V   AP ++FMG S E  G+ GKL+ F++V       G  AD W+RAALE+CGGRGGG+P SAQGQA   +++D  IA A  FA
Sbjct:  785 SVEFCGGTHVSNTAEAEAFVLVEETAVAKGIRRITGVTKGAAIEAIAEGKKFVEIVSSAEELSADTPELDKKAGAMRKDLDAAFMSAPLKAELRARIEAIQKKGIAAKKAALAGRVDQVLKTVKEDISAAVAEGKRALVLNVDICADSKAAQKVMNDVKSVAPDMAFMGLSEEEAGSGGKLMCFAVVPDSLVADGFKADAWVRAALESCGGRGGGKPGSAQGQAQECSDVDAVIAVANEFA 1025          
BLAST of mRNA_H-paniculata_contig14178.2536.1 vs. uniprot
Match: B8LD66_THAPS (Alanine--tRNA ligase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LD66_THAPS)

HSP 1 Score: 169 bits (428), Expect = 2.760e-44
Identity = 114/242 (47.11%), Postives = 157/242 (64.88%), Query Frame = 1
Query:   37 CSVEFCGGTHVSNTREAEAFVIAEESAVAKGIRRITALTGAPAKRAAANGEKLRVRAAEVAGMKGADLETALSAFRRDVDTATLSAAVKGKLRAEGDALLKRVAAEAKAAAALASEEGVNAAGKAAKEAADRGESVLIMEVMIGANSKAVKRVLDAVAKAAPGLSFMGFSAEGPGASGKLLVFSIV-NGVAAESGLNADEWLRAALEACGGRGGGRPTSAQGQAASAAEMDKAIAAAKSFAA 759
            CSVEFCGGTH+SNT EAEAFV+ EE+AVAKGIRRITALT     R AA  +K      E+      DL+    A R+D+D A LSAA+K +LRA  + + K+     K   A   ++ +N   +  ++A   G+  L++ + IGA+SKA ++V+ AV K AP ++FMG S E PG+ GK+L F+IV + +  E+GL A+EW +  L++ GGRGGG+P SAQGQA S  ++   IA A+SFAA
Sbjct:  692 CSVEFCGGTHISNTAEAEAFVLTEETAVAKGIRRITALT-----RGAAFEQKTAALE-EIDADNSPDLDKQAGALRKDLDAAELSAALKSELRARIEGVQKKGIEAKKRLLAGRVDKCLNGVTEEVEKALIDGKKSLVLNLDIGADSKASQKVIKAVQKLAPEMAFMGISEEEPGSGGKILCFAIVPDSLMKETGLKANEWTKEVLDSVGGRGGGKPGSAQGQAPSCEDVGAVIAKAESFAA 927          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14178.2536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCV6_ECTSI2.240e-9972.00Alanine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835ZLN6_9STRA8.440e-5048.00Alanine--tRNA ligase n=1 Tax=Tribonema minus TaxID... [more]
A0A7S1FYS4_9STRA1.090e-4849.55Alanine--tRNA ligase n=1 Tax=Corethron hystrix Tax... [more]
A0A7S4NG01_9STRA1.610e-4846.09Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S4AXE9_9STRA8.260e-4746.50Alanine--tRNA ligase n=1 Tax=Pseudo-nitzschia aust... [more]
K0SS72_THAOC1.660e-4546.50Alanine--tRNA ligase n=1 Tax=Thalassiosira oceanic... [more]
A0A7S2E064_9STRA1.800e-4545.96Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A448Z8F1_9STRA3.270e-4545.27Alanine--tRNA ligase n=1 Tax=Pseudo-nitzschia mult... [more]
A0A7S1YSQ0_9STRA4.780e-4546.47Alanine--tRNA ligase n=4 Tax=Ditylum brightwellii ... [more]
B8LD66_THAPS2.760e-4447.11Alanine--tRNA ligase (Fragment) n=1 Tax=Thalassios... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14178contigH-paniculata_contig14178:416..5274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score327.8
Seed ortholog evalue4.5e-87
Seed eggNOG ortholog2880.D8LCV6
KEGG rclassRC00055,RC00523
KEGG koko:K01872
KEGG ReactionR03038
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
EggNOG free text desc.alanyl-tRNA aminoacylation
EggNOG OGsCOG0013@1,KOG0188@2759
EC6.1.1.7
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons6
Model size762
Cds size762
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14178.2536.1prot_H-paniculata_contig14178.2536.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14178 416..5274 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929126.9357226-CDS-H-paniculata_contig14178:415..5651622929126.9357226-CDS-H-paniculata_contig14178:415..565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14178 416..565 -
1691480741.2751906-CDS-H-paniculata_contig14178:415..5651691480741.2751906-CDS-H-paniculata_contig14178:415..565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14178 416..565 -
1622929126.952745-CDS-H-paniculata_contig14178:1966..21221622929126.952745-CDS-H-paniculata_contig14178:1966..2122Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14178 1967..2122 -
1691480741.2859154-CDS-H-paniculata_contig14178:1966..21221691480741.2859154-CDS-H-paniculata_contig14178:1966..2122Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14178 1967..2122 -
1622929126.9678032-CDS-H-paniculata_contig14178:3173..32391622929126.9678032-CDS-H-paniculata_contig14178:3173..3239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14178 3174..3239 -
1691480741.295681-CDS-H-paniculata_contig14178:3173..32391691480741.295681-CDS-H-paniculata_contig14178:3173..3239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14178 3174..3239 -
1622929126.981514-CDS-H-paniculata_contig14178:3510..36371622929126.981514-CDS-H-paniculata_contig14178:3510..3637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14178 3511..3637 -
1691480741.3041606-CDS-H-paniculata_contig14178:3510..36371691480741.3041606-CDS-H-paniculata_contig14178:3510..3637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14178 3511..3637 -
1622929127.0001493-CDS-H-paniculata_contig14178:4204..43291622929127.0001493-CDS-H-paniculata_contig14178:4204..4329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14178 4205..4329 -
1691480741.313658-CDS-H-paniculata_contig14178:4204..43291691480741.313658-CDS-H-paniculata_contig14178:4204..4329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14178 4205..4329 -
1622929127.0219018-CDS-H-paniculata_contig14178:5136..52741622929127.0219018-CDS-H-paniculata_contig14178:5136..5274Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14178 5137..5274 -
1691480741.3233573-CDS-H-paniculata_contig14178:5136..52741691480741.3233573-CDS-H-paniculata_contig14178:5136..5274Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14178 5137..5274 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14178.2536.1

>prot_H-paniculata_contig14178.2536.1 ID=prot_H-paniculata_contig14178.2536.1|Name=mRNA_H-paniculata_contig14178.2536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=254bp
QAEDPDREEWASCSVEFCGGTHVSNTREAEAFVIAEESAVAKGIRRITAL
TGAPAKRAAANGEKLRVRAAEVAGMKGADLETALSAFRRDVDTATLSAAV
KGKLRAEGDALLKRVAAEAKAAAALASEEGVNAAGKAAKEAADRGESVLI
MEVMIGANSKAVKRVLDAVAKAAPGLSFMGFSAEGPGASGKLLVFSIVNG
VAAESGLNADEWLRAALEACGGRGGGRPTSAQGQAASAAEMDKAIAAAKS
FAA*
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mRNA from alignment at H-paniculata_contig14178:416..5274-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14178.2536.1 ID=mRNA_H-paniculata_contig14178.2536.1|Name=mRNA_H-paniculata_contig14178.2536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4859bp|location=Sequence derived from alignment at H-paniculata_contig14178:416..5274- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGGAGGATCCCGACCGTGAAGAATGGGCGAGTTGTTCGGTGGAATT TTGTGGAGGAACGCACGTCTCAAACACGCGCGAAGCCGAAGCTTTTGTTA TCGCGGAGGAAAGTGCTGTCGCCAAGGGAATCCGCCGGGTATGAATATAC GTACGTATATATATATATAGAGAGAGAGAGAGAGAGAGACAGCTTTCTAT TTATGTTTTTTTTTTTTTGGTGTTTGATTGTTGGAAGTTTTGCCCCAAGA CCGTTTTTACGTTTAATTCTATCTTCTTTTTGCCCGTCCTTACTGTTGTT TTTCCCTCGCCCGAAAACGTTACTATAGAGTGGAGTTGTAAATAATAGCT AATTCGAGAAATATATCTGAAAGCCTCAAATATCCCCCCGAATGTTGACG ACGCTCACTCAAAGAAAATGTGTAACGGACCTTCTCCAGCTGTGTAGATG ACTGCTGCGTGTCTCCATTACCCGTCTCGAAGTATCTTCCCATGAATCGC ACCCCATCTCCTACCTTTACACGATCCGTTTTGAGTCAAAAAGTGAAATA CGTTTTATAATTGCCGTCTTTTAACGACCCCCTCGCCGTCAGCATCCAGC GGTTCTGAACGCTGGTTCGAGGATTCGCGGTCTGCCATCGAAGCTCAACG GTCCCGCGATGAGGAATCCTTTGGCGTGGTGTGCGATTCGCCCAATCCTA AAACATTAAAGCGCTTAATTTCGACGCAGTTTCTAAACATGAATGGATAC TTGGGAACGAAAAACACAGACGTAACGGCGTAAATACATTTCGTGTCGTT ATTTTTTCTTTTCCGAAAGAGAGAGAGAGAGAGAGAGAGAGACAGACAGA CAGACAGACAGAGAGTCCCTCGATCTTCCTTGTCTTTCTCTTCTTCCCTT CCCACGCCGTCACGTCGAACGACCGCCGCCGCTGCTCAATCGAAGATAAC GGCGTTGACGGGTGCCCCGGCGAAGCGGGCGGCCGCAAACGGAGAGAAAC TGCGGGTCAGAGCAGCCGAAGTAGCGGGGATGAAGGGTGCGGACCTGGAG ACGGCCCTTTCAGCGTTCAGGTACTCATTTCGTCGTTGCTCCGTATGTAA CGGCAGGAGGTGTGAAATGTAAAAAAAAAACTACATGAAATAAAGTCGTT AGCGTATCCATAATAGATCGGGGGTAGTGCACAGTAGAGCTATTCAAAGG AAATGTTTCGTTTCGTTTCGTTTCGTTACATTTTTTTTTTCTTTTTTTTT TCGAGGATTAGCTCTGGTTATCACGCCAAGATTAACTGCGTACAACGCAA GTCCCCCGATATCTTCCCAGTAATACCCCTCTGGCTTTGGCGCCTGAAAA GAGATAGCCACCGTAAATCCCGAATTAATAGTTTTGGTCGTTGGAATCGC GGAAGGTTTTCGGCCGCCGAACGAAACTCCGCTTTTTTTTCCGACGCTTC GTACCGAAAAGCGGCTAACTTCGGCGTAGCGTTGGAGCCAAGGATGAACT CGCGCTGGAGAAACCGTTTCTTGTTTTGTAACGCAAGTGACTAGCTTTTT TTTTCGAGTGGTTATACGTGAGATTGATGACGTCCGACCGTAGCTTTCGG CGCGATGGTGTATATGATTCGCGGTCTTGTGCGACAGGCGTGACGTGGAC ACTGCGACATTATCCGCCGCTGTGAAAGGCAAGCTGAGGGCAGAGGGAGA TGCGCTGCTCAAGAGGGTAGCCGCCGAAGCTAAGGCTGCGGCCGCGCTGG CTTCTGAAGAAGGGGTGAGAGATAGCGAGCGATAGAGAGACGAAAAGACA GACAGACAGGGAGACAAGTTGGTCTTCCCTGCGCTCCCCCTATTGATGTA AATTTTGTGCTGGTAAGTATTTGTACAAAATTGAAGCTTTGAGTTCAGCT GCATAGTCTTAACAGGGGAATATTAAACAAGCGGTATTGTTCTACTAGCT GTGGAACTATCCCCCCCTCCCCCCCCCTTCCTCTCCCCTCCCCTCCCCCA CCCATTCGTCCACCCCCCGTCCCCGCACCCAACAGGTGAACGCGGCGGGC AAGGCCGCGAAAGAGGCAGCCGACAGGGGAGAATCCGTCCTGATCATGGA GGTGAGTGGGATGGGGCAGAGGGTGGAAGATCCATCGATCGGTACTGTAG GTCCAAATTGCAATCTGGTCTGTTTTTAGGCACGATATGGCACGAATTTT CTCTCTGTATATGTGTACATGGGTGTGTGTGTTTTGGAGATGTGCGTCGG AACCGGGATAGAGCCTTTCCAGCGGTGTGTGATGTTTCAAGTAGTCAGTG TAATCAGCAAGGGTGGGGTAGGTCATCGTCGTTGTCGTCATTTGGGAACA TATGTTCGAGTCTGTACTCGACTACGTTGTTAAAATCGAATCTTGGTGCA GGCGCAGCAAGCCGTTGTATATGTCTTGGACGAAACACTCGAGGACGGCT TTACTGGAGTATGACTATACTAAATTGTAACAGCACGGCTGTATTGTAAC CGTGGTTCTACTGCTAGATCCACCTCAACATGTATCGGAGAGCTCCATGA ACGGCTAGCTGGTTGGTACATCAATCATCTCGGGGTGCAGTATGATTTTT GGTGTTGTTTTTACACTCTTGTTCTCTTGGATTTGGTGTACTTGTACAGG GAGGACGAACAAAAACCCCGAGCTTGCATGTATCGTTAAGACCAAATAAT AGTAACGTTAACAAACAAGCCCTGTACACTGCAGCTGATCATGAGGTCAT CGTAGGCTCTTGAGAGGGATTGACAAAATACGTAAGAGGCTGTACATCCG GTGCTCTAGATCTACACCTCGAAACGTCATCTCTCCGTGTGTATGTGTGT GTTCGTTGGCACGGGGCTAATTATAGTTAATCCCCGTGCTCTGCCTACCA GGGGCACGAGGCGTTTTTGTTTTTGAGGTCATTTGTCGTTCGACTGAGAG CAGTAGGATGTGCAAATTTCCCCTCGCTTTGGCCCTCGACTGACTGCCCA TGACGAGGAGAAGCGATGTCCGAACGCTCCTCGTTCCTTCCTTTTAAACA GGCTGCAAAAATCCCCATAATCTAAGAAATTAGAATACGCTACTACGAAT TCCTATCATCCCCATATGACTGCACTCCATAAAACATCATCGTGTATGGC AGGTGATGATCGGTGCAAACTCTAAAGCGGTTAAAAGGGTGCTGGATGCT GTTGCGAAGGCTGCGCCGGGACTGTCGTTCATGGGATTCAGCGCTGAGGG TCCCGGCGCTTCAGGAAAGTTGTTGGTGTTCAGCATCGTCAACGGGGTCG CAGCAGAGGTGAAATGGCTGTATAAGAACCGGATTGAGGATTGGATCGTT AGAGGGGTTGTGTGCGTTGAATGAGGGACGGATTGGCATGGTGCCGATCT ATCTCTCGTTCGGTATTTTGCAGCTATGATGCGCGTTTTTTTTCGTCTTT TGTTTTGGTCGGCTGTTCGATATGGATTCATTCGTTCAGGTGGCCCGATG GACCGCAACAAGTGGCCACCTCTATTATAGTACGTACAGCTGGCGCGCGA TCATTGTGTAGTGCGAGGCTTGGGCAGTTTCCTGTGTTGGAAGACAGGAA GCACAGACATCCACGCCTGTATATTTACCTACATGACTTGCGTTTTCTTG ATTTTGACACGGACACGGTACAATAATAGAAATCGTTGCAGAACGCGGGG TACCTGCATCGATCAATGAATTTTTTCCTCCTTTTGTTGTTGTTGTTGTG TTTCTCTACGGGTATTGCCGCTATATTCGTGCATGGATTGTAACTGTTTC TTCGTGGTACCATGTGCTCGCAGATTTCGAGTATACAATGTAAAAATTCG AAGGTATCGGAATGACCGAGGTGCGACCGTTTTTCAAAGGCGATGGACTA ATCTCGAGAGCGGAGACCTTAATGCACACGGTCGAAAGAACCTCTCCCTC TACAGATGAAAACATCCCCGCAAGATCTTTTCAATTGCCCACTCTTTTAG TTTCGTGTGTTGTCAGCAGCGAGGTACCGTCGTTGTCGAGGTAATTGCGT TTGATGAGCGTGTATACACACCCCATTGACATCGATGCCTACATCCAGGT TTTACGGTATGTGCCTGATGAATGGCCACACGTTTCAAGGAGGGGGTGTT GTTGACGTCTTTTTTCTCTGATTGTCTACAGTTCTCGTTACAAATTGAGG AATTCGATGACATTCATGAAAATTTTGGGACTCATGATGTTTTTCGGAAG AGTTTTGAGGTAAGAAATCGAGCTCAAATTGTGTCCCTGTACTATTTATC ACCAGGAGATAAGAAACTGTTTCGTCGGGTGAGGCTGTACATCAGACGGG AACTTGACGCTAAATAGGCGTTGCAGGTGCTATGGTGTGCGGTATTGTGC CGGGATGGCTCATCTGGAAATATTTCTTGAGATCCACCACAGATCAACGT GGAAATTTTTGGAGATGCTCAAAATCTGGGGAGGCAAGGAGGGAGGAGGG AGGATGGGCACCTTAGTTAGTTCAACAGCTTTTAGGTTCTGGTTTTCTCT CTTCCTTGCTTTGCTGTTATTCGCGTCTGTGTGATGTATCTTGATATTTC TCCCCTTTACTCCCTTCGGTTGGTGTGTCCAACTACTTTTATAATGTTAT TTTTGTTCATTCTTCTTGCCGTTTTCGCCTCACTTCAATATATATATATG TTCCATCAGAGCGGTCTCAACGCGGACGAGTGGCTTCGCGCTGCTCTGGA GGCATGTGGCGGGAGGGGAGGGGGTCGACCAACCTCGGCTCAGGGACAGG CTGCTAGCGCGGCGGAGATGGACAAAGCTATTGCTGCCGCCAAGAGTTTT GCTGCTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig14178:416..5274-

>mRNA_H-paniculata_contig14178.2536.1 ID=mRNA_H-paniculata_contig14178.2536.1|Name=mRNA_H-paniculata_contig14178.2536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1524bp|location=Sequence derived from alignment at H-paniculata_contig14178:416..5274- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGGAGGATCCCGACCGTGAAGAATGGGCGAGTTGTTCGGTGGAATT
TTGTGGAGGAACGCACGTCTCAAACACGCGCGAAGCCGAAGCTTTTGTTA
TCGCGGAGGAAAGTGCTGTCGCCAAGGGAATCCGCCGGCAGGCGGAGGAT
CCCGACCGTGAAGAATGGGCGAGTTGTTCGGTGGAATTTTGTGGAGGAAC
GCACGTCTCAAACACGCGCGAAGCCGAAGCTTTTGTTATCGCGGAGGAAA
GTGCTGTCGCCAAGGGAATCCGCCGGATAACGGCGTTGACGGGTGCCCCG
GCGAAGCGGGCGGCCGCAAACGGAGAGAAACTGCGGGTCAGAGCAGCCGA
AGTAGCGGGGATGAAGGGTGCGGACCTGGAGACGGCCCTTTCAGCGTTCA
GATAACGGCGTTGACGGGTGCCCCGGCGAAGCGGGCGGCCGCAAACGGAG
AGAAACTGCGGGTCAGAGCAGCCGAAGTAGCGGGGATGAAGGGTGCGGAC
CTGGAGACGGCCCTTTCAGCGTTCAGGCGTGACGTGGACACTGCGACATT
ATCCGCCGCTGTGAAAGGCAAGCTGAGGGCAGAGGGAGATGCGCTGCTCA
AGAGGGTAGCCGCCGAAGCTAAGGCTGCGGCCGCGCTGGCTTCTGAAGAA
GGGGCGTGACGTGGACACTGCGACATTATCCGCCGCTGTGAAAGGCAAGC
TGAGGGCAGAGGGAGATGCGCTGCTCAAGAGGGTAGCCGCCGAAGCTAAG
GCTGCGGCCGCGCTGGCTTCTGAAGAAGGGGTGAACGCGGCGGGCAAGGC
CGCGAAAGAGGCAGCCGACAGGGGAGAATCCGTCCTGATCATGGAGGTGA
ACGCGGCGGGCAAGGCCGCGAAAGAGGCAGCCGACAGGGGAGAATCCGTC
CTGATCATGGAGGTGATGATCGGTGCAAACTCTAAAGCGGTTAAAAGGGT
GCTGGATGCTGTTGCGAAGGCTGCGCCGGGACTGTCGTTCATGGGATTCA
GCGCTGAGGGTCCCGGCGCTTCAGGAAAGTTGTTGGTGTTCAGCATCGTC
AACGGGGTCGCAGCAGAGGTGATGATCGGTGCAAACTCTAAAGCGGTTAA
AAGGGTGCTGGATGCTGTTGCGAAGGCTGCGCCGGGACTGTCGTTCATGG
GATTCAGCGCTGAGGGTCCCGGCGCTTCAGGAAAGTTGTTGGTGTTCAGC
ATCGTCAACGGGGTCGCAGCAGAGAGCGGTCTCAACGCGGACGAGTGGCT
TCGCGCTGCTCTGGAGGCATGTGGCGGGAGGGGAGGGGGTCGACCAACCT
CGGCTCAGGGACAGGCTGCTAGCGCGGCGGAGATGGACAAAGCTATTGCT
GCCGCCAAGAGTTTTGCTGCTTAAAGCGGTCTCAACGCGGACGAGTGGCT
TCGCGCTGCTCTGGAGGCATGTGGCGGGAGGGGAGGGGGTCGACCAACCT
CGGCTCAGGGACAGGCTGCTAGCGCGGCGGAGATGGACAAAGCTATTGCT
GCCGCCAAGAGTTTTGCTGCTTAA
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