mRNA_H-paniculata_contig1415.2527.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1415.2527.1
Unique NamemRNA_H-paniculata_contig1415.2527.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1415.2527.1 vs. uniprot
Match: D7G011_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G011_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 1.350e-38
Identity = 65/79 (82.28%), Postives = 72/79 (91.14%), Query Frame = 1
Query:    1 MIWVHGFHLAILPGFLERRVKVARIGLFLHSPFPPSEVFRALPQRKELLRGMLGADQVGFHRFIDGRHFTSSCRRLLGL 237
            MIW+HGFHLAILP FL+R VKVARIGLFLH+PFPP EVFRALP R++LLRGMLGADQVGFHRF D +HF +SCRRLLGL
Sbjct:  226 MIWIHGFHLAILPAFLDRTVKVARIGLFLHTPFPPGEVFRALPHREDLLRGMLGADQVGFHRFSDSQHFMTSCRRLLGL 304          
BLAST of mRNA_H-paniculata_contig1415.2527.1 vs. uniprot
Match: A0A7S1VW85_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1VW85_9STRA)

HSP 1 Score: 119 bits (299), Expect = 8.450e-31
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 1
Query:    1 MIWVHGFHLAILPGFLERRVKVARIGLFLHSPFPPSEVFRALPQRKELLRGMLGADQVGFHRFIDGRHFTSSCRRLLGL 237
            +IW+HGFHL ILP FL RR+ +A+IG+FLH+PFP SE+FR L  R++LLRGML ADQVGFH F   RHF + CRRLLGL
Sbjct:    2 LIWIHGFHLMILPSFLTRRISMAKIGIFLHTPFPSSEIFRTLWCREDLLRGMLNADQVGFHLFEYARHFLTCCRRLLGL 80          
BLAST of mRNA_H-paniculata_contig1415.2527.1 vs. uniprot
Match: A0A7S2PH62_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PH62_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.330e-30
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 1
Query:    1 MIWVHGFHLAILPGFLERRVKVARIGLFLHSPFPPSEVFRALPQRKELLRGMLGADQVGFHRFIDGRHFTSSCRRLLGL 237
            +IW+HGFHL ILP FL RR+ +A+IG+FLH+PFP SE+FR L  R++LLRGML ADQVGFH F   RHF + CRRLLGL
Sbjct:  142 LIWIHGFHLMILPSFLTRRISMAKIGIFLHTPFPSSEIFRTLWCREDLLRGMLNADQVGFHLFEYARHFLTCCRRLLGL 220          
BLAST of mRNA_H-paniculata_contig1415.2527.1 vs. uniprot
Match: K0R7L2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R7L2_THAOC)

HSP 1 Score: 117 bits (294), Expect = 3.750e-30
Identity = 52/79 (65.82%), Postives = 63/79 (79.75%), Query Frame = 1
Query:    1 MIWVHGFHLAILPGFLERRVKVARIGLFLHSPFPPSEVFRALPQRKELLRGMLGADQVGFHRFIDGRHFTSSCRRLLGL 237
            +IW+HGFHL ILP FL RR+ +A+IG+F H+PFP SE+FR L  R++LLRGML ADQVGFH F   RHF + CRRLLGL
Sbjct:   96 LIWIHGFHLMILPSFLTRRIPMAKIGIFFHTPFPSSEIFRTLWCREDLLRGMLNADQVGFHLFEYARHFLTCCRRLLGL 174          
BLAST of mRNA_H-paniculata_contig1415.2527.1 vs. uniprot
Match: D7FL73_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL73_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 5.860e-30
Identity = 52/79 (65.82%), Postives = 64/79 (81.01%), Query Frame = 1
Query:    1 MIWVHGFHLAILPGFLERRVKVARIGLFLHSPFPPSEVFRALPQRKELLRGMLGADQVGFHRFIDGRHFTSSCRRLLGL 237
            MIWVHGFHL +LP FL R ++ AR+GLFLH+PFP SE+FR LP R++LLRGML ADQ+GFH F   RHF + C+R+LGL
Sbjct:  277 MIWVHGFHLLLLPSFLTRVLRTARVGLFLHTPFPSSEIFRTLPFREDLLRGMLNADQIGFHLFEYARHFITCCKRILGL 355          
BLAST of mRNA_H-paniculata_contig1415.2527.1 vs. uniprot
Match: V5K3Y9_SACJA (Trehalose-6-phosohate synthase n=1 Tax=Saccharina japonica TaxID=88149 RepID=V5K3Y9_SACJA)

HSP 1 Score: 120 bits (300), Expect = 8.010e-30
Identity = 51/79 (64.56%), Postives = 64/79 (81.01%), Query Frame = 1
Query:    1 MIWVHGFHLAILPGFLERRVKVARIGLFLHSPFPPSEVFRALPQRKELLRGMLGADQVGFHRFIDGRHFTSSCRRLLGL 237
            M+WVHGFHL +LP FL R ++ AR+GLFLH+PFP SE+FR LP R++LLRGML ADQ+GFH F   RHF + C+R+LGL
Sbjct:  317 MVWVHGFHLLLLPSFLTRVLRTARVGLFLHTPFPSSEIFRTLPFREDLLRGMLNADQIGFHLFEYARHFLTCCKRILGL 395          
BLAST of mRNA_H-paniculata_contig1415.2527.1 vs. uniprot
Match: B8BYN3_THAPS (Trehalose-6-phosphate synthase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYN3_THAPS)

HSP 1 Score: 119 bits (299), Expect = 1.070e-29
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 1
Query:    1 MIWVHGFHLAILPGFLERRVKVARIGLFLHSPFPPSEVFRALPQRKELLRGMLGADQVGFHRFIDGRHFTSSCRRLLGL 237
            +IW+HGFHL ILP FL RR+ +A+IG+FLH+PFP SE+FR L  R++LLRGML ADQVGFH F   RHF + CRRLLGL
Sbjct:  132 LIWIHGFHLMILPSFLTRRISMAKIGIFLHTPFPSSEIFRTLWCREDLLRGMLNADQVGFHLFEYARHFLTCCRRLLGL 210          
BLAST of mRNA_H-paniculata_contig1415.2527.1 vs. uniprot
Match: A0A1Z5JS81_FISSO (Trehalose 6-phosphate synthase/phosphatase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JS81_FISSO)

HSP 1 Score: 119 bits (299), Expect = 1.090e-29
Identity = 52/79 (65.82%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    1 MIWVHGFHLAILPGFLERRVKVARIGLFLHSPFPPSEVFRALPQRKELLRGMLGADQVGFHRFIDGRHFTSSCRRLLGL 237
            ++WVHGFHL ILP +L RR+ +A++G+FLH+PFP SE+FR L  R++LLRGML ADQVGFH F   RHF +SCRRLLGL
Sbjct:  426 LVWVHGFHLLILPSYLTRRIPMAKVGIFLHTPFPSSEIFRTLWCREDLLRGMLNADQVGFHLFEYARHFLTSCRRLLGL 504          
BLAST of mRNA_H-paniculata_contig1415.2527.1 vs. uniprot
Match: A0A7S2GVR7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GVR7_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.190e-29
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 1
Query:    1 MIWVHGFHLAILPGFLERRVKVARIGLFLHSPFPPSEVFRALPQRKELLRGMLGADQVGFHRFIDGRHFTSSCRRLLGL 237
            +IW+HGFHL ILP FL RR+ +A+IGLFLH+PFP SE+FR L  R++LLRGML +DQVGFH F   RHF + CRRLLGL
Sbjct:   91 LIWIHGFHLLILPSFLTRRIPMAKIGLFLHTPFPSSEIFRTLWCREDLLRGMLNSDQVGFHLFEYARHFLTCCRRLLGL 169          
BLAST of mRNA_H-paniculata_contig1415.2527.1 vs. uniprot
Match: B7G068_PHATC (Bifunctional trehalose-6-phosphate synthase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G068_PHATC)

HSP 1 Score: 119 bits (298), Expect = 1.490e-29
Identity = 51/79 (64.56%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    1 MIWVHGFHLAILPGFLERRVKVARIGLFLHSPFPPSEVFRALPQRKELLRGMLGADQVGFHRFIDGRHFTSSCRRLLGL 237
            ++W+HGFHL ILP +L RR+ +A++G+FLH+PFP SE+FR L  R++LLRGML ADQVGFH F   RHF +SCRRLLGL
Sbjct:  432 LVWIHGFHLLILPSYLTRRIPMAKVGIFLHTPFPSSEIFRTLWCREDLLRGMLNADQVGFHLFEYARHFLTSCRRLLGL 510          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1415.2527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G011_ECTSI1.350e-3882.28Trehalose 6-phosphate synthase, family GT20 / Treh... [more]
A0A7S1VW85_9STRA8.450e-3167.09Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S2PH62_9STRA3.330e-3067.09Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
K0R7L2_THAOC3.750e-3065.82Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
D7FL73_ECTSI5.860e-3065.82Trehalose 6-phosphate synthase, family GT20 / Treh... [more]
V5K3Y9_SACJA8.010e-3064.56Trehalose-6-phosohate synthase n=1 Tax=Saccharina ... [more]
B8BYN3_THAPS1.070e-2967.09Trehalose-6-phosphate synthase (Fragment) n=1 Tax=... [more]
A0A1Z5JS81_FISSO1.090e-2965.82Trehalose 6-phosphate synthase/phosphatase n=2 Tax... [more]
A0A7S2GVR7_9STRA1.190e-2967.09Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
B7G068_PHATC1.490e-2964.56Bifunctional trehalose-6-phosphate synthase n=2 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1415contigH-paniculata_contig1415:2327..4262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue2.9e-32
Seed eggNOG ortholog2880.D7G011
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K16055
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,map00500,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.trehalose biosynthetic process
EggNOG OGsCOG1877@1,KOG1050@2759
EC2.4.1.15,3.1.3.12
COG Functional cat.G
CAZyGT20
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons3
Model size239
Cds size237
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1415.2527.1prot_H-paniculata_contig1415.2527.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1415 2327..4262 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929125.702775-CDS-H-paniculata_contig1415:2326..23921622929125.702775-CDS-H-paniculata_contig1415:2326..2392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1415 2327..2392 -
1691480740.914545-CDS-H-paniculata_contig1415:2326..23921691480740.914545-CDS-H-paniculata_contig1415:2326..2392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1415 2327..2392 -
1622929125.7187297-CDS-H-paniculata_contig1415:3411..35191622929125.7187297-CDS-H-paniculata_contig1415:3411..3519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1415 3412..3519 -
1691480740.9269667-CDS-H-paniculata_contig1415:3411..35191691480740.9269667-CDS-H-paniculata_contig1415:3411..3519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1415 3412..3519 -
1622929125.7335489-CDS-H-paniculata_contig1415:4199..42621622929125.7335489-CDS-H-paniculata_contig1415:4199..4262Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1415 4200..4262 -
1691480740.9350698-CDS-H-paniculata_contig1415:4199..42621691480740.9350698-CDS-H-paniculata_contig1415:4199..4262Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1415 4200..4262 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1415.2527.1

>prot_H-paniculata_contig1415.2527.1 ID=prot_H-paniculata_contig1415.2527.1|Name=mRNA_H-paniculata_contig1415.2527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
MIWVHGFHLAILPGFLERRVKVARIGLFLHSPFPPSEVFRALPQRKELLR
GMLGADQVGFHRFIDGRHFTSSCRRLLGL
back to top

mRNA from alignment at H-paniculata_contig1415:2327..4262-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1415.2527.1 ID=mRNA_H-paniculata_contig1415.2527.1|Name=mRNA_H-paniculata_contig1415.2527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1936bp|location=Sequence derived from alignment at H-paniculata_contig1415:2327..4262- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCTGGGTGCATGGGTTTCACCTCGCCATTCTGCCGGGCTTCCTGGA ACGAAGGGTTAAGGTACAGTGTTTATGGCGTTTCGGAAATTGCGGTGCAA TATGTCGGAGATGAAAATAACTCAGTAGTGGAAGAAATAACGTTGGATAA GATGACAACAGCAGTAGGTAACATAATAGCGGTGGTAGACAATGGGACAT TGCGGACCTTGGTTATCATCCACCTATTGTGTTTCTTTCGTGGTTGAAAT GTTATTTGATACTCCAAAATTACTACATTCATGAAACAATTCTTGTAGTA GAGTCATGTCTACACCCACGCTTACACTTAATGCTTGTCCTCGGCCCACG GACTCTAGTTACCCCCATGTGAAGATTTATTTGTGTACAGACTTGAAAAT CTTTTTCGAAATAATAATCCCCTGAAAATGCGATATTGAACAATAAAAAC GTTCGATGAATAACTCCTGCGGTGAATATCCCGTATTTGCGACACACCTC CCCCTATCATTATAAACTCGTGTGAAAATTCGTTTTTTCAGAATTTACTT GAATATATAACAGAGTATGTTCCGTAACCACAGCCAAATTGATTTCGCCG TTTTCATTGAGGACATTTGGTAGGTGGCTCTTGCAGTGAAGATCCCGAAT TAGTAACGAGCTCCCCCCTATCACATCACCTAGCCTATTGATTGTCAAAA TTTGTGCTGTCTCTCATGTAGAGCATGTGTGCTGCGGTCACAGGTGGCTC GTATTGGGTTATTCCTTCACAGTCCATTCCCTCCAAGTGAGGTGTTCCGG GCGCTGCCGCAGCGGAAAGAACTCCTTCGAGGGATGCTGGGAGCCGATCA GGTACATACGCTCTGTCTGAGCAGGTGATGCGACCGCTGCAGTTGTGCAG CCACGGCTGCGCCTGTGCAATGGAGTTAGTCCATGCTTTTTCTTGTCCAT TTGATTTTAACCCAAACGATCAGTGAACAGCCTATATACATCGACTCCCT GCTGTCATCGCCAGTAGAGTTGGCTCAAGGCCGTGCAAAAATGGGGTAGC CTGATTATCCCTTATTTTCGATTTTTGGGTAAGCGTATGTATTAGGACAT CCGTTTTATCCGGAAATAATTCCCAAATTCGGGGCGTAAGGACTCCTGAA ACGAAAATCATAGAACTCCAAATCAGACTCGTTCGCTGTGCACGGTCCCT TGATGCTGTTCTCGCTCTTGCGTACAAGTCACTTGGGAGCAGAGAGGTAT GTTTTACTCATGCCTTCAGATGAATACAAATACGTGGCGGGTGGCGCCTG TGCCACAAAATTTATAAAGTGTTGACCCGAGTTTGATAATGAGCAATGAG CGGCGAAGAACAAGATATCCACTAACACCCTTGTCTATGATTTGATTTAC CAAGTATTACTGACAGTTGTGGATGGTCCGCGACACACATAAAATACATA AGCTCGTTCAAAAACTCGAGCGAATATCTATTTTTTTCGTGGCGAATACC TGAAGTATTCGTATTTCGTATTCGTATGTCCCGGCATTGGATTTACTCCT CCCTTGGACAAATATGAAGATTAGTGCTTGGGGGATTCACGGCAAAATCG AGAGAACTGTCCATCCCCCTGAAGGTTGGGTATTATGAGCGCATTTCTTT TATTTTCCCGAGGACCATTGCCGATTGCTCCGCGTGATAGCAACACGAAT ACACTAATATTCTGAACCTTTGGGCCAGTATTTTTTTTTGCTCCATGTTC GAAATAATATACTTGTCTGAGGGTTGGGTATTTGTTGTTCATGCTCGTTT TTTTTTTTTTTTCCGTATCTTTTTTGCCTTGTCTGATGTTTTCTCTCTTT TTTTTTTGTTTCGGTGACAGGTTGGATTTCACCGCTTCATTGACGGCAGG CACTTCACATCCAGCTGTCGGCGACTGCTCGGCTTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1415:2327..4262-

>mRNA_H-paniculata_contig1415.2527.1 ID=mRNA_H-paniculata_contig1415.2527.1|Name=mRNA_H-paniculata_contig1415.2527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig1415:2327..4262- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCTGGGTGCATGGGTTTCACCTCGCCATTCTGCCGGGCTTCCTGGA
ACGAAGGGTTAAGATGATCTGGGTGCATGGGTTTCACCTCGCCATTCTGC
CGGGCTTCCTGGAACGAAGGGTTAAGGTGGCTCGTATTGGGTTATTCCTT
CACAGTCCATTCCCTCCAAGTGAGGTGTTCCGGGCGCTGCCGCAGCGGAA
AGAACTCCTTCGAGGGATGCTGGGAGCCGATCAGGTGGCTCGTATTGGGT
TATTCCTTCACAGTCCATTCCCTCCAAGTGAGGTGTTCCGGGCGCTGCCG
CAGCGGAAAGAACTCCTTCGAGGGATGCTGGGAGCCGATCAGGTTGGATT
TCACCGCTTCATTGACGGCAGGCACTTCACATCCAGCTGTCGGCGACTGC
TCGGCTTGGTTGGATTTCACCGCTTCATTGACGGCAGGCACTTCACATCC
AGCTGTCGGCGACTGCTCGGCTTG
back to top