mRNA_H-paniculata_contig1414.2525.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig1414.2525.1 vs. uniprot
Match: A0A8F0K262_9PHAE (Ribosomal protein L6 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0K262_9PHAE) HSP 1 Score: 144 bits (363), Expect = 2.820e-42 Identity = 73/89 (82.02%), Postives = 79/89 (88.76%), Query Frame = 1 Query: 1 QALVGVSLSYVLKLQLKGIGYRVEKQAKNLFSKLGYSHPVIFSVPEVVEVKCIKNSLFFRSTHLIVLKNFSLMLRRLRFPDSYKGSGVL 267 QALVGVSLSY LKL+LKGIGYRVEKQ K LF KLGYSHPVI +PEV+EV+ IKN+L FRS HLIVLKNFSL LRRLRFPDSYKGSGV+ Sbjct: 61 QALVGVSLSYSLKLRLKGIGYRVEKQDKKLFFKLGYSHPVIIFIPEVLEVESIKNNLSFRSAHLIVLKNFSLSLRRLRFPDSYKGSGVI 149
BLAST of mRNA_H-paniculata_contig1414.2525.1 vs. uniprot
Match: Q2TUD2_DICDH (Ribosomal protein L6 n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TUD2_DICDH) HSP 1 Score: 105 bits (262), Expect = 5.900e-27 Identity = 50/89 (56.18%), Postives = 63/89 (70.79%), Query Frame = 1 Query: 1 QALVGVSLSYVLKLQLKGIGYRVEKQAKNLFSKLGYSHPVIFSVPEVVEVKCIKNSLFFRSTHLIVLKNFSLMLRRLRFPDSYKGSGVL 267 Q L G+SLSYVL L L G+GY+V+K + KLGYSH +PEV+ +KCIKN + RS+HL+ L F+ LR+LRFPDSYKG GVL Sbjct: 61 QGLYGISLSYVLILVLHGVGYKVDKVDNTIVLKLGYSHMHFIPIPEVINIKCIKNEIHMRSSHLVRLNYFASSLRKLRFPDSYKGRGVL 149
BLAST of mRNA_H-paniculata_contig1414.2525.1 vs. uniprot
Match: A0A4Y5T8W9_9PHAE (Ribosomal protein L6 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T8W9_9PHAE) HSP 1 Score: 105 bits (261), Expect = 8.350e-27 Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 1 Query: 1 QALVGVSLSYVLKLQLKGIGYRVEKQAKNLFSKLGYSHPVIFSVPEVVEVKCIKNSLFFRSTHLIVLKNFSLMLRRLRFPDSYKGSGVL 267 QA++GVSLSYVL+L L G+GYRVEK A L+ KLGYSH V +PE V C KN + RS HL++LK S +R+LR+P+ YKG+GVL Sbjct: 61 QAIIGVSLSYVLELSLVGVGYRVEKVANKLYFKLGYSHLVAVRIPEDVVAGCSKNIITLRSAHLLLLKTVSSKIRKLRYPNPYKGTGVL 149
BLAST of mRNA_H-paniculata_contig1414.2525.1 vs. uniprot
Match: A0A2H4ZR05_9PHAE (Ribosomal protein L6 n=2 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A2H4ZR05_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 3.530e-23 Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 1 Query: 1 QALVGVSLSYVLKLQLKGIGYRVEKQAKNLFSKLGYSHPVIFSVPEVVEVKCIKNSLFFRSTHLIVLKNFSLMLRRLRFPDSYKGSGVL 267 QA+ GV Y ++L LKGIGYRV ++ L LGYS+PVI ++P+ V V K SLF S + +L+NF+ +RRLRFPDSYKGSG++ Sbjct: 61 QAVQGVIFGYTIELTLKGIGYRVREEDDKLIFSLGYSNPVILNIPKDVSVTFSKQSLFIMSPNFSILQNFATAIRRLRFPDSYKGSGIV 149
BLAST of mRNA_H-paniculata_contig1414.2525.1 vs. uniprot
Match: A0A1I9LW55_9PHAE (Ribosomal protein L6 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW55_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 5.000e-23 Identity = 46/89 (51.69%), Postives = 60/89 (67.42%), Query Frame = 1 Query: 1 QALVGVSLSYVLKLQLKGIGYRVEKQAKNLFSKLGYSHPVIFSVPEVVEVKCIKNSLFFRSTHLIVLKNFSLMLRRLRFPDSYKGSGVL 267 QA+ GV Y L+L LKGIGYRV ++ + LF LGYS PVI +P+ + +K K S S + VL+NF+ +RR RFPDSYKG+GVL Sbjct: 61 QAIQGVVFGYSLELSLKGIGYRVREEKRKLFFSLGYSKPVILDIPKDISIKFNKKSFLLNSANFGVLQNFATTIRRYRFPDSYKGAGVL 149
BLAST of mRNA_H-paniculata_contig1414.2525.1 vs. uniprot
Match: Q94Z21_PYLLI (Ribosomal protein L6 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z21_PYLLI) HSP 1 Score: 95.5 bits (236), Expect = 5.000e-23 Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 1 Query: 1 QALVGVSLSYVLKLQLKGIGYRVEKQAKNLFSKLGYSHPVIFSVPEVVEVKCIKNSLFFRSTHLIVLKNFSLMLRRLRFPDSYKGSGVL 267 QA+ GV L Y ++L LKGIGY+V + +NL LGYS PVI ++PE V VK K S S ++ VL+NF+ M+R RFPDSYKG+G+L Sbjct: 61 QAVQGVVLGYTIELNLKGIGYKVSTKERNLILSLGYSKPVILNIPEEVSVKLSKKSFSLISPNMGVLQNFATMVRSQRFPDSYKGAGIL 149
BLAST of mRNA_H-paniculata_contig1414.2525.1 vs. uniprot
Match: Q2TUH0_9PHAE (Ribosomal protein L6 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUH0_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 7.080e-23 Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 1 Query: 1 QALVGVSLSYVLKLQLKGIGYRVEKQAKNLFSKLGYSHPVIFSVPEVVEVKCIKNSLFFRSTHLIVLKNFSLMLRRLRFPDSYKGSGVL 267 QA++GV L Y ++L+LKGIGYRV ++ L LGYS P+I ++PE + VK K + RS + +L+NF+ +RR RFPD YKG G+L Sbjct: 61 QAVLGVILGYTIELKLKGIGYRVREEKGKLIFSLGYSRPIILTIPEAISVKFNKKTFLLRSANFGLLQNFATTIRRFRFPDPYKGGGIL 149
BLAST of mRNA_H-paniculata_contig1414.2525.1 vs. uniprot
Match: A0A8F0FCE9_9PHAE (Ribosomal protein L6 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FCE9_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 1.000e-22 Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 1 Query: 1 QALVGVSLSYVLKLQLKGIGYRVEKQAKNLFSKLGYSHPVIFSVPEVVEVKCIKNSLFFRSTHLIVLKNFSLMLRRLRFPDSYKGSGVL 267 QA+ GV L Y ++L+LKGIGYRV ++ L LGYS PV+ ++P+ VEVK K + S + VL+NF+ +RR RFPDSYKG+GVL Sbjct: 61 QAIYGVVLGYTIELRLKGIGYRVREEDNKLIFSLGYSRPVLLNIPKDVEVKFSKRTFSLMSANYGVLQNFATTIRRYRFPDSYKGAGVL 149
BLAST of mRNA_H-paniculata_contig1414.2525.1 vs. uniprot
Match: W5RGA8_COSCS (Ribosomal protein L6 n=1 Tax=Costaria costata TaxID=2872 RepID=W5RGA8_COSCS) HSP 1 Score: 94.0 bits (232), Expect = 2.010e-22 Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 1 Query: 1 QALVGVSLSYVLKLQLKGIGYRVEKQAKNLFSKLGYSHPVIFSVPEVVEVKCIKNSLFFRSTHLIVLKNFSLMLRRLRFPDSYKGSGVL 267 QA+ GV L Y ++L+LKGIGYRV ++ K LF LGYS V+ +PE V VK K + S + VL+NF+ +RR R+PDSYKG+GVL Sbjct: 61 QAIFGVVLGYTIELKLKGIGYRVREEEKKLFFSLGYSKAVVVDIPEAVSVKLGKKTFSLISANFGVLQNFASSIRRYRYPDSYKGAGVL 149
BLAST of mRNA_H-paniculata_contig1414.2525.1 vs. uniprot
Match: A0A516ICG7_9PHAE (Ribosomal protein L6 n=3 Tax=Lessonia TaxID=105411 RepID=A0A516ICG7_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 4.020e-22 Identity = 45/89 (50.56%), Postives = 64/89 (71.91%), Query Frame = 1 Query: 1 QALVGVSLSYVLKLQLKGIGYRVEKQAKNLFSKLGYSHPVIFSVPEVVEVKCIKNSLFFRSTHLIVLKNFSLMLRRLRFPDSYKGSGVL 267 QA++GV L Y ++L+L+GIGYRV+++ K L LGYS PVI ++PE V V K + S +L VL+NF+ +R+ R+PDSYKG+GVL Sbjct: 61 QAILGVVLGYTIELKLQGIGYRVQQEKKKLIFFLGYSKPVIINIPEEVSVNLGKKTFLLISANLGVLQNFASSIRKYRYPDSYKGAGVL 149 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1414.2525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1414.2525.1 >prot_H-paniculata_contig1414.2525.1 ID=prot_H-paniculata_contig1414.2525.1|Name=mRNA_H-paniculata_contig1414.2525.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp QALVGVSLSYVLKLQLKGIGYRVEKQAKNLFSKLGYSHPVIFSVPEVVEVback to top mRNA from alignment at H-paniculata_contig1414:23721..23990- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1414.2525.1 ID=mRNA_H-paniculata_contig1414.2525.1|Name=mRNA_H-paniculata_contig1414.2525.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=270bp|location=Sequence derived from alignment at H-paniculata_contig1414:23721..23990- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1414:23721..23990- >mRNA_H-paniculata_contig1414.2525.1 ID=mRNA_H-paniculata_contig1414.2525.1|Name=mRNA_H-paniculata_contig1414.2525.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig1414:23721..23990- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |