mRNA_H-paniculata_contig1412.2515.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1412.2515.1
Unique NamemRNA_H-paniculata_contig1412.2515.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1412.2515.1 vs. uniprot
Match: D7FR93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR93_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 6.980e-59
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 1 
Query:    1 MMLAGMGLLNTMPMLATIMVEKGLLASLGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 288
            MMLAGMGLLNTMPMLAT+ VEKGLL +LGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE
Sbjct:    2 MMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 97
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BLAST of mRNA_H-paniculata_contig1412.2515.1 vs. uniprot
Match: A0A6H5JFR3_9PHAE (1,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR3_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 3.610e-52
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 1 
Query:    1 MMLAGMGLLNTMPMLATIMVEKGLLASLGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 288
            MMLAGMGLLNTMPMLAT+ VEKGLL +LGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE
Sbjct: 1738 MMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 1833
[Close]
BLAST of mRNA_H-paniculata_contig1412.2515.1 vs. uniprot
Match: A0A835Z1S2_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S2_9STRA)

HSP 1 Score: 167 bits (423), Expect = 4.210e-46
Identity = 85/96 (88.54%), Postives = 90/96 (93.75%), Query Frame = 1 
Query:    1 MMLAGMGLLNTMPMLATIMVEKGLLASLGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 288
            MMLAGMG+LNT+PMLAT+MVEKGL A+L  V QVF+SGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHS FDDLYRFFA SHFYLGFE
Sbjct: 1824 MMLAGMGVLNTLPMLATLMVEKGLRAALVVVGQVFVSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSTFDDLYRFFATSHFYLGFE 1919
[Close]
BLAST of mRNA_H-paniculata_contig1412.2515.1 vs. uniprot
Match: A0A835Z4B5_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B5_9STRA)

HSP 1 Score: 166 bits (420), Expect = 1.060e-45
Identity = 84/96 (87.50%), Postives = 90/96 (93.75%), Query Frame = 1 
Query:    1 MMLAGMGLLNTMPMLATIMVEKGLLASLGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 288
            M+LAGMG+LNT+PMLAT+MVEKGL A+L  V QVF+SGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHS FDDLYRFFA SHFYLGFE
Sbjct: 1425 MLLAGMGVLNTLPMLATLMVEKGLRAALITVGQVFVSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSSFDDLYRFFATSHFYLGFE 1520
[Close]
BLAST of mRNA_H-paniculata_contig1412.2515.1 vs. uniprot
Match: A0A8J2T241_9STRA (1,3-beta-glucan synthase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T241_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.580e-36
Identity = 70/94 (74.47%), Postives = 81/94 (86.17%), Query Frame = 1 
Query:    7 LAGMGLLNTMPMLATIMVEKGLLASLGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 288
            LAG+GLLNT+P+LAT+ VE+GLLA+  +V QVF SGGP+YF+FHIQTRAHYF QTLLAGGA YRATGRGFVT H+ FD+ YRFFA SH YLG E
Sbjct: 1806 LAGLGLLNTLPLLATLAVERGLLAATRDVAQVFASGGPLYFVFHIQTRAHYFMQTLLAGGATYRATGRGFVTTHNSFDEQYRFFAASHLYLGVE 1899
[Close]
BLAST of mRNA_H-paniculata_contig1412.2515.1 vs. uniprot
Match: F0YA81_AURAN (1,3-beta-glucan synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YA81_AURAN)

HSP 1 Score: 137 bits (344), Expect = 1.900e-35
Identity = 68/95 (71.58%), Postives = 81/95 (85.26%), Query Frame = 1 
Query:    4 MLAGMGLLNTMPMLATIMVEKGLLASLGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 288
            +LAG+GLLNT+P+LAT+ VE+GL A+  +V QVF SGGP+YF+FHIQTRAHYF QT+LAGGA YRATGRGFVT HS FD+ YRFFA SH +LG E
Sbjct: 1901 LLAGLGLLNTLPLLATLAVERGLWAAAKDVAQVFASGGPLYFIFHIQTRAHYFTQTILAGGATYRATGRGFVTRHSTFDEQYRFFAASHLHLGVE 1995
[Close]
BLAST of mRNA_H-paniculata_contig1412.2515.1 vs. uniprot
Match: A0A7S2UV62_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV62_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.570e-35
Identity = 66/96 (68.75%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:    1 MMLAGMGLLNTMPMLATIMVEKGLLASLGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 288
            M L GMG+L T+PM +T+ VEKG+ +++G VLQVF SGGP+YFMFHIQT+++YF QTLLAG A+YR TGRGFVT HS FD+ +RFFA+SHFYLGFE
Sbjct: 1202 MCLGGMGILQTVPMFSTLAVEKGVASAVGTVLQVFFSGGPLYFMFHIQTKSYYFIQTLLAGNAKYRPTGRGFVTRHSSFDENFRFFASSHFYLGFE 1297
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BLAST of mRNA_H-paniculata_contig1412.2515.1 vs. uniprot
Match: A0A7S2QVX6_9STRA (1,3-beta-glucan synthase (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVX6_9STRA)

HSP 1 Score: 129 bits (325), Expect = 6.930e-33
Identity = 63/96 (65.62%), Postives = 81/96 (84.38%), Query Frame = 1 
Query:    1 MMLAGMGLLNTMPMLATIMVEKGLLASLGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 288
            M+L GMGL+NT+P+ AT+ VE+G  AS+ E+ QVF++GGP++FMFHIQT+AHYF QT+L GGA+YRATGRGFVT HS F + +RFFA+SH YLG E
Sbjct: 1648 MLLGGMGLMNTIPLFATLGVERGWWASMMEIFQVFVTGGPLHFMFHIQTKAHYFAQTILVGGAKYRATGRGFVTQHSPFAENFRFFASSHLYLGVE 1743
[Close]
BLAST of mRNA_H-paniculata_contig1412.2515.1 vs. uniprot
Match: A0A7S3H8Z7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H8Z7_9STRA)

HSP 1 Score: 126 bits (317), Expect = 8.160e-32
Identity = 60/95 (63.16%), Postives = 81/95 (85.26%), Query Frame = 1 
Query:    4 MLAGMGLLNTMPMLATIMVEKGLLASLGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 288
            +L+GMG+L TMP+L T+ VEKG+LA++ E+  + LSGGP+YF+FHI+T+++YF QTL+AGGA+YR TGR FVT HS FD+ +RFFA+SH YLGFE
Sbjct:  263 LLSGMGILQTMPLLITLTVEKGVLAAISEIGFMILSGGPLYFIFHIETKSYYFSQTLMAGGAKYRPTGRAFVTSHSSFDENFRFFASSHIYLGFE 357
[Close]
BLAST of mRNA_H-paniculata_contig1412.2515.1 vs. uniprot
Match: A0A7S0GHQ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GHQ8_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.280e-31
Identity = 58/96 (60.42%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:    1 MMLAGMGLLNTMPMLATIMVEKGLLASLGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 288
            M+L G+GLL T+P++AT+ VE+G LA++ ++  VF++GGP++FMFHIQT+AHY  QT+L GGA+YR TGRGFVT H+  D+ +RFFA+SH YLGFE
Sbjct:  217 MLLGGLGLLQTIPLIATLGVERGWLAAVQDIFSVFVTGGPLHFMFHIQTKAHYMAQTILVGGAKYRPTGRGFVTQHTPMDEQFRFFASSHLYLGFE 312
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1412.2515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR93_ECTSI6.980e-5995.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFR3_9PHAE3.610e-5295.831,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CC... [more]
A0A835Z1S2_9STRA4.210e-4688.541,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A835Z4B5_9STRA1.060e-4587.501,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A8J2T241_9STRA1.580e-3674.471,3-beta-glucan synthase n=1 Tax=Pelagomonas calce... [more]
F0YA81_AURAN1.900e-3571.581,3-beta-glucan synthase n=1 Tax=Aureococcus anoph... [more]
A0A7S2UV62_9STRA2.570e-3568.75Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2QVX6_9STRA6.930e-3365.631,3-beta-glucan synthase (Fragment) n=1 Tax=Tripar... [more]
A0A7S3H8Z7_9STRA8.160e-3263.16Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0GHQ8_9STRA1.280e-3160.42Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1412contigH-paniculata_contig1412:18355..18901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.1
Seed ortholog evalue3e-44
Seed eggNOG ortholog2880.D7FR93
KEGG koko:K11000
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.1,3-beta-D-glucan synthase activity
EggNOG OGsKOG0916@1,KOG0916@2759
Ec32 ortholog descriptionGlycosyl transferase, family 48
Ec32 orthologEc-08_004910.1
COG Functional cat.S
CAZyGT48
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01003
Exons2
Model size288
Cds size288
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929124.2298465-CDS-H-paniculata_contig1412:18354..185511622929124.2298465-CDS-H-paniculata_contig1412:18354..18551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1412 18355..18551 +
1691480740.2515721-CDS-H-paniculata_contig1412:18354..185511691480740.2515721-CDS-H-paniculata_contig1412:18354..18551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1412 18355..18551 +
1622929124.2996638-CDS-H-paniculata_contig1412:18810..189011622929124.2996638-CDS-H-paniculata_contig1412:18810..18901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1412 18811..18901 +
1691480740.2700672-CDS-H-paniculata_contig1412:18810..189011691480740.2700672-CDS-H-paniculata_contig1412:18810..18901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1412 18811..18901 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1412.2515.1prot_H-paniculata_contig1412.2515.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1412 18355..18901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1412.2515.1

>prot_H-paniculata_contig1412.2515.1 ID=prot_H-paniculata_contig1412.2515.1|Name=mRNA_H-paniculata_contig1412.2515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MMLAGMGLLNTMPMLATIMVEKGLLASLGEVLQVFLSGGPMYFMFHIQTR
AHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE
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mRNA from alignment at H-paniculata_contig1412:18355..18901+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1412.2515.1 ID=mRNA_H-paniculata_contig1412.2515.1|Name=mRNA_H-paniculata_contig1412.2515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=547bp|location=Sequence derived from alignment at H-paniculata_contig1412:18355..18901+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCTCGCGGGCATGGGTCTCCTGAACACGATGCCTATGCTGGCCAC
CATAATGGTCGAAAAGGGCTTGCTGGCGTCCCTTGGAGAGGTACTGCAGG
TGTTCTTGAGCGGTGGGCCAATGTACTTCATGTTCCACATCCAGACTCGA
GCGCACTACTTCTACCAAACCCTTCTGGCCGGAGGCGCGCAGTACAGGTG
ATGGTGACGGTGATGGTGGTGTTGATGATGTTGATGATGGTATCGAGGCA
GCAAATGGCGTTTGATTTTCAGTATACCACAATTTTGGGAAATTATCTTT
CGTCAGCAGAGTTACATAACCCAGGTCGGATGGAAGGTCTCTCTTTTTGT
TCCTACCGTGTATTTTATGTGTGTTGCGTGTTTCTGTTTTTGCCCGTGTT
GACTCGCGGTGACGGACACATGGTTATTTGCATCAATGTGAATTGGTTGG
ATGCAGGGCAACTGGGAGAGGGTTCGTGACGCACCATTCCTGCTTCGACG
ACCTCTATCGCTTCTTTGCGAACTCGCACTTCTATCTGGGCTTCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1412:18355..18901+

>mRNA_H-paniculata_contig1412.2515.1 ID=mRNA_H-paniculata_contig1412.2515.1|Name=mRNA_H-paniculata_contig1412.2515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig1412:18355..18901+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCTCGCGGGCATGGGTCTCCTGAACACGATGCCTATGCTGGCCAC
CATAATGGTCGAAAAGGGCTTGCTGGCGTCCCTTGGAGAGGTACTGCAGG
TGTTCTTGAGCGGTGGGCCAATGTACTTCATGTTCCACATCCAGACTCGA
GCGCACTACTTCTACCAAACCCTTCTGGCCGGAGGCGCGCAGTACAGATG
ATGCTCGCGGGCATGGGTCTCCTGAACACGATGCCTATGCTGGCCACCAT
AATGGTCGAAAAGGGCTTGCTGGCGTCCCTTGGAGAGGTACTGCAGGTGT
TCTTGAGCGGTGGGCCAATGTACTTCATGTTCCACATCCAGACTCGAGCG
CACTACTTCTACCAAACCCTTCTGGCCGGAGGCGCGCAGTACAGGGCAAC
TGGGAGAGGGTTCGTGACGCACCATTCCTGCTTCGACGACCTCTATCGCT
TCTTTGCGAACTCGCACTTCTATCTGGGCTTCGAGGGCAACTGGGAGAGG
GTTCGTGACGCACCATTCCTGCTTCGACGACCTCTATCGCTTCTTTGCGA
ACTCGCACTTCTATCTGGGCTTCGAG
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