mRNA_H-paniculata_contig14118.2513.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14118.2513.1
Unique NamemRNA_H-paniculata_contig14118.2513.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14118.2513.1 vs. uniprot
Match: D8LGQ4_ECTSI (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGQ4_ECTSI)

HSP 1 Score: 439 bits (1130), Expect = 4.400e-148
Identity = 221/239 (92.47%), Postives = 231/239 (96.65%), Query Frame = 1 
Query:   10 QSWYPRSTWMMPSPDDPPEVDPRRRDPDKPTEYPPVRMPVVDVGGGQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPEKDITLYINSPGGSVSAGMAIYDAMQYVPCDVATVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCDQPVDKIQDDCDRDFFMTPEEALDYGLIDQVVETKTSHISKPSMPSLEEVF 726
            ++WYP S  MMPSPDDPPEVDPRR+DPD+P E PPVRMPVVDVGG QMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDP+KDITLYINSPGGSVSAGMAIYDAMQYVPCDV+TVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCDQP DKIQDDCDRDFFMTPEEA+DYGLID+VV TKTSHI+KP+MPSLEEVF
Sbjct:   54 KTWYPHSVSMMPSPDDPPEVDPRRKDPDRPAEAPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPDKDITLYINSPGGSVSAGMAIYDAMQYVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCDQPADKIQDDCDRDFFMTPEEAMDYGLIDEVVTTKTSHIAKPAMPSLEEVF 292
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BLAST of mRNA_H-paniculata_contig14118.2513.1 vs. uniprot
Match: A0A835YSZ8_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSZ8_9STRA)

HSP 1 Score: 400 bits (1027), Expect = 1.400e-132
Identity = 209/251 (83.27%), Postives = 224/251 (89.24%), Query Frame = 1 
Query:   16 WYPRSTW-------------MMPSPDDPP-EVDPRRRDPDKPTEYPPVRMPVVDVGGGQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPEKDITLYINSPGGSVSAGMAIYDAMQYVPCDVATVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCDQPVDKIQDDCDRDFFMTPEEALDYGLIDQVVETKTSHISKPSMPSLEEVF 726
            WYP  TW             MMP+PDDPP EVDPRRRDPDKP+E PPVRMPVVDVGGGQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLA++DP KDITLYINSPGGSVSAGMAIYD MQYVPCDV+TVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSY+A+Y  QP++KIQ+DCDRDFFMTPEEA +YG+ID+V+ TKTS I KP MPSLE V+
Sbjct:   42 WYP--TWDNRMGLTARTGPYMMPNPDDPPPEVDPRRRDPDKPSEIPPVRMPVVDVGGGQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLASEDPSKDITLYINSPGGSVSAGMAIYDTMQYVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYIADYTGQPIEKIQEDCDRDFFMTPEEAAEYGIIDEVITTKTSSIPKPPMPSLELVY 290
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BLAST of mRNA_H-paniculata_contig14118.2513.1 vs. uniprot
Match: F0YIP9_AURAN (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIP9_AURAN)

HSP 1 Score: 374 bits (961), Expect = 6.550e-123
Identity = 190/226 (84.07%), Postives = 210/226 (92.92%), Query Frame = 1 
Query:   37 MMPSPDDPPEVDPRRRDPDKPTEYPPVRMPVVDVGGGQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPEKDITLYINSPGGSVSAGMAIYDAMQYVPCDVATVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCDQPVDKIQDDCDRDFFMTPEEALDYGLIDQVVETKTSHISKPSMPSL 714
            MMPSPDDPPEVDPRRRDP+KP+  PPVRMP+VD G GQMDVISRLL+DRILLLG+ V+DEVANVLVAQLLYLANDDP KDITLYINSPGGSVSAGMAIYD MQ+VPCDV+TVCFGTAASMGAFLLGAGAKGKRRSLPN+RIMIHQPLGGAQGQAADIEIQAKEILF+R  LN++++EY  QP+DKI++DCDRDFFM PEEAL YGLID+VV+TKTSHI+ P MP L
Sbjct:   47 MMPSPDDPPEVDPRRRDPEKPS-IPPVRMPMVDTGDGQMDVISRLLRDRILLLGRGVDDEVANVLVAQLLYLANDDPTKDITLYINSPGGSVSAGMAIYDTMQFVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNSRIMIHQPLGGAQGQAADIEIQAKEILFVRQQLNTFISEYTGQPMDKIEEDCDRDFFMCPEEALSYGLIDEVVKTKTSHIAMPPMPEL 271
[Close]
BLAST of mRNA_H-paniculata_contig14118.2513.1 vs. uniprot
Match: A0A7S4EKY3_9STRA (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A7S4EKY3_9STRA)

HSP 1 Score: 371 bits (952), Expect = 1.280e-121
Identity = 187/228 (82.02%), Postives = 211/228 (92.54%), Query Frame = 1 
Query:   34 WMMPSPDDP-PEVDPRRRDPDKPTEYPPVRMPVVDVGGGQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPEKDITLYINSPGGSVSAGMAIYDAMQYVPCDVATVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCDQPVDKIQDDCDRDFFMTPEEALDYGLIDQVVETKTSHISKPSMPSL 714
            W+M  PD+P PEVDPRRRDPD      PVRMPV+D   GQMDV+SRLLKDRILLLGQ V+DEVANVLVAQLLYLAN+DPEKDITLYINSPGGSVSAGMAIYD MQYVPCDV+TVCFG AASMGAFLLGAGAKGKRR+LPN+RIMIHQPLGGAQGQAADIEIQAKEILFIR +LN+Y+AEYCDQP DKI++DCDRDFFMTPEEA++YG+ID+V++TKTSH++KP+MP+L
Sbjct:   43 WVM-MPDEPAPEVDPRRRDPDDQPPANPVRMPVIDTDAGQMDVLSRLLKDRILLLGQGVDDEVANVLVAQLLYLANEDPEKDITLYINSPGGSVSAGMAIYDTMQYVPCDVSTVCFGMAASMGAFLLGAGAKGKRRALPNSRIMIHQPLGGAQGQAADIEIQAKEILFIREVLNTYIAEYCDQPKDKIEEDCDRDFFMTPEEAVEYGIIDEVIKTKTSHVTKPAMPTL 269
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BLAST of mRNA_H-paniculata_contig14118.2513.1 vs. uniprot
Match: A0A7S3NLA1_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLA1_9STRA)

HSP 1 Score: 369 bits (946), Expect = 8.590e-121
Identity = 193/236 (81.78%), Postives = 212/236 (89.83%), Query Frame = 1 
Query:   10 QSWYPRSTWMMPSPDDPPEVDPRRRDPD-KPTEYPPVRMPVVDVGGGQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPEKDITLYINSPGGSVSAGMAIYDAMQYVPCDVATVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCDQPVDKIQDDCDRDFFMTPEEALDYGLIDQVVETKTSHISKPSMPSL 714
            QS   R   MM  P+  PEVDPRRRDPD KP   PPVRMPVVD G GQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLAN+DP KDITLY+NSPGGSVSAGMAIYDAMQ+VPCDVATVCFGTAASMGAFLLGAGA+GKRR+LPNARIMIHQPLGGAQGQAADIEIQAKEILF+R  LN++++EY  QP+ K+++DCDRDFFMTPEEALDYGLID V++TKTSH++KP MPSL
Sbjct:   31 QSSRARRIKMMSEPE--PEVDPRRRDPDTKPV--PPVRMPVVDSGDGQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANEDPTKDITLYVNSPGGSVSAGMAIYDAMQFVPCDVATVCFGTAASMGAFLLGAGARGKRRALPNARIMIHQPLGGAQGQAADIEIQAKEILFVRQQLNTFISEYTGQPISKVEEDCDRDFFMTPEEALDYGLIDSVIQTKTSHLAKPPMPSL 262
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BLAST of mRNA_H-paniculata_contig14118.2513.1 vs. uniprot
Match: A0A7R9ZQJ7_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZQJ7_9STRA)

HSP 1 Score: 369 bits (946), Expect = 8.900e-121
Identity = 186/231 (80.52%), Postives = 210/231 (90.91%), Query Frame = 1 
Query:   25 RSTWMMPSPDDP-PEVDPRRRDPDKPTEYPPVRMPVVDVGGGQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPEKDITLYINSPGGSVSAGMAIYDAMQYVPCDVATVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCDQPVDKIQDDCDRDFFMTPEEALDYGLIDQVVETKTSHISKPSMPSL 714
            RS W M  PD+P PE+DPRR+DPD+    PPVRMPVVD   GQMDV+SRLLKDRILLLGQ V+DEVANVLVAQLLYLAN+DP+KDITLYINSPGGSVSAGMAIYD MQY+PCDV+TVCFG AASMGAFLLGAG +GKRR+LPN+RIMIHQPLGGAQGQAADIEIQAKEILFIR +LN+Y+A+YCDQP DKI+ DCDRDFFMTPEEA++YG+ID+VV+TKTSHI KP MP+L
Sbjct:   36 RSQWTM-MPDEPAPEIDPRRKDPDERPNVPPVRMPVVDTEKGQMDVVSRLLKDRILLLGQGVDDEVANVLVAQLLYLANEDPDKDITLYINSPGGSVSAGMAIYDTMQYIPCDVSTVCFGMAASMGAFLLGAGTQGKRRALPNSRIMIHQPLGGAQGQAADIEIQAKEILFIREVLNTYIADYCDQPKDKIEQDCDRDFFMTPEEAVEYGIIDEVVKTKTSHIPKPPMPAL 265
[Close]
BLAST of mRNA_H-paniculata_contig14118.2513.1 vs. uniprot
Match: A0A7S2UVQ8_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVQ8_9STRA)

HSP 1 Score: 369 bits (948), Expect = 1.190e-120
Identity = 193/237 (81.43%), Postives = 212/237 (89.45%), Query Frame = 1 
Query:   13 SWYPRSTWMMP--SPDD-PPEVDPRRRDPDKPTEYPPVRMPVVDVGGGQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPEKDITLYINSPGGSVSAGMAIYDAMQYVPCDVATVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCDQPVDKIQDDCDRDFFMTPEEALDYGLIDQVVETKTSHISKPSMPSL 714
            +W  R+   +P  +PD+ PPEVDPRRR+PD+    PP  MPVVDVG GQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLAN+DPEKDITLYINSPGGSVSAGMAIYD MQYVPCDVATVCFGTAASMGAFLLGAGA GKRR+LPNARIMIHQPLGGAQGQAAD+EIQAKEILFIR  LN ++A+Y  QP DKI++DCDRDFFM+PEEA DYGLID+VV+TKTSHI KP+MPSL
Sbjct:   56 NWEMRNGLSIPRMAPDEEPPEVDPRRRNPDESPTRPPPLMPVVDVGDGQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANEDPEKDITLYINSPGGSVSAGMAIYDTMQYVPCDVATVCFGTAASMGAFLLGAGAPGKRRALPNARIMIHQPLGGAQGQAADVEIQAKEILFIREQLNGFIADYTGQPKDKIEEDCDRDFFMSPEEAKDYGLIDEVVKTKTSHIKKPAMPSL 292
[Close]
BLAST of mRNA_H-paniculata_contig14118.2513.1 vs. uniprot
Match: A0A6U2ZXF5_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U2ZXF5_9STRA)

HSP 1 Score: 368 bits (944), Expect = 2.050e-120
Identity = 189/230 (82.17%), Postives = 208/230 (90.43%), Query Frame = 1 
Query:   28 STWMMPSPDDP-PEVDPRRRDPDKPTEYPPVRMPVVDVGGGQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPEKDITLYINSPGGSVSAGMAIYDAMQYVPCDVATVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCDQPVDKIQDDCDRDFFMTPEEALDYGLIDQVVETKTSHISKPSMPSL 714
            S W M  PD+P PEVDPRR+DPD+     PVRMPV+D   GQMDVISRLLKDRILLLGQ V+DEVANVLVAQLLYLAN+DPEKDITLYINSPGGSVSAGMAIYD MQYVPCDV TVCFG AASMGAFLLGAGAKGKRR+LPN+RIMIHQPLGGAQGQAADIEIQAKEILFIR +LN+Y+AEYCDQP DKI++DCDRDFFMTPEEA++YG+ID+V+ TKTSHI+KP MP L
Sbjct:   41 SRWTM-MPDEPAPEVDPRRKDPDEAPPANPVRMPVIDTDNGQMDVISRLLKDRILLLGQGVDDEVANVLVAQLLYLANEDPEKDITLYINSPGGSVSAGMAIYDTMQYVPCDVNTVCFGMAASMGAFLLGAGAKGKRRALPNSRIMIHQPLGGAQGQAADIEIQAKEILFIREVLNTYIAEYCDQPKDKIEEDCDRDFFMTPEEAVEYGIIDEVITTKTSHITKPVMPVL 269
[Close]
BLAST of mRNA_H-paniculata_contig14118.2513.1 vs. uniprot
Match: A0A6S9E5R1_9STRA (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A6S9E5R1_9STRA)

HSP 1 Score: 367 bits (942), Expect = 4.700e-120
Identity = 188/226 (83.19%), Postives = 205/226 (90.71%), Query Frame = 1 
Query:   37 MMPSPDDPPEVDPRRRDPDKPTEYPPVRMPVVDVGGGQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPEKDITLYINSPGGSVSAGMAIYDAMQYVPCDVATVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCDQPVDKIQDDCDRDFFMTPEEALDYGLIDQVVETKTSHISKPSMPSL 714
            MMP  +  PEVDPRR+DPD     PPVRMPV+D   GQMDVISRLLKDRILLLGQ V+DEVANVLVAQLLYLAN+DPEKDITLYINSPGGSVSAGMAIYD MQYVPCDV TVCFG AASMGAFLLGAGA GKRR+LPN+RIMIHQPLGGAQGQAADIEIQAKEILFIR +LN+Y+AEYCDQP DKI++DCDRDFFMTPEEA+DYG+ID+VV TKTSHI+KP MP+L
Sbjct:   49 MMPE-EPQPEVDPRRKDPDDQPPSPPVRMPVIDTEKGQMDVISRLLKDRILLLGQGVDDEVANVLVAQLLYLANEDPEKDITLYINSPGGSVSAGMAIYDTMQYVPCDVNTVCFGMAASMGAFLLGAGAPGKRRALPNSRIMIHQPLGGAQGQAADIEIQAKEILFIREVLNTYIAEYCDQPKDKIEEDCDRDFFMTPEEAVDYGIIDEVVTTKTSHITKPEMPTL 273
[Close]
BLAST of mRNA_H-paniculata_contig14118.2513.1 vs. uniprot
Match: A0A6T5QFA7_HETAK (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5QFA7_HETAK)

HSP 1 Score: 365 bits (936), Expect = 3.620e-119
Identity = 184/234 (78.63%), Postives = 213/234 (91.03%), Query Frame = 1 
Query:   16 WYPRSTWMMPSPDDPPEVDPRRRDPDKPTEYPPVRMPVVDVGGGQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPEKDITLYINSPGGSVSAGMAIYDAMQYVPCDVATVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCDQPVDKIQDDCDRDFFMTPEEALDYGLIDQVVETKTSHISKPSMPSLE 717
            W P+   MMP  ++PPE+DPRR++PD+    PP  MPVVDVGGGQMDVISRLL+DRILLLGQQVNDEVAN+LVAQLLYLA +DP KDITLYINSPGGSVSAG+AI+D MQYVPCDV+TVCFGTAASMGAFLLGAG  GKRR+LPNARIMIHQPLGGAQGQAADIEIQAKEIL+IR++LNSY+A+Y  QP+DKIQ+DCDRDFFM+PEEA DYG+ID+V++TKTS+I KP+MPSL+
Sbjct:   43 WSPK---MMPD-EEPPEIDPRRKNPDEAPVRPPPMMPVVDVGGGQMDVISRLLQDRILLLGQQVNDEVANLLVAQLLYLAQEDPTKDITLYINSPGGSVSAGLAIFDTMQYVPCDVSTVCFGTAASMGAFLLGAGTPGKRRALPNARIMIHQPLGGAQGQAADIEIQAKEILYIRAMLNSYIADYTGQPIDKIQEDCDRDFFMSPEEAKDYGIIDEVIKTKTSYIPKPAMPSLD 272
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14118.2513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGQ4_ECTSI4.400e-14892.47ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A835YSZ8_9STRA1.400e-13283.27ATP-dependent Clp protease proteolytic subunit n=1... [more]
F0YIP9_AURAN6.550e-12384.07ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A7S4EKY3_9STRA1.280e-12182.02ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A7S3NLA1_9STRA8.590e-12181.78ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7R9ZQJ7_9STRA8.900e-12180.52ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2UVQ8_9STRA1.190e-12081.43ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A6U2ZXF5_9STRA2.050e-12082.17ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A6S9E5R1_9STRA4.700e-12083.19ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A6T5QFA7_HETAK3.620e-11978.63ATP-dependent Clp protease proteolytic subunit n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14118contigH-paniculata_contig14118:116..5730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score433.0
Seed ortholog evalue9.1e-119
Seed eggNOG ortholog2880.D8LGQ4
Preferred nameCLPP4
KEGG koko:K01358
KEGG Pathwayko04112,ko04212,map04112,map04212
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0008150,GO:0009368,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009658,GO:0009840,GO:0009941,GO:0009987,GO:0016020,GO:0016043,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0040034,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048506,GO:0048509,GO:0048510,GO:0050789,GO:0050793,GO:0055035,GO:0065007,GO:0071840
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG0740@1,KOG0840@2759
Ec32 ortholog descriptionchloroplast clp protease P
Ec32 orthologEc-07_005420.1
EC3.4.21.92
COG Functional cat.OU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons6
Model size1950
Cds size693
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14118.2513.1prot_H-paniculata_contig14118.2513.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14118 152..4509 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929123.920151-UTR-H-paniculata_contig14118:115..1511622929123.920151-UTR-H-paniculata_contig14118:115..151Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14118 116..151 +
1691480740.1031814-UTR-H-paniculata_contig14118:115..1511691480740.1031814-UTR-H-paniculata_contig14118:115..151Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14118 116..151 +
1622929124.0819643-UTR-H-paniculata_contig14118:4509..57301622929124.0819643-UTR-H-paniculata_contig14118:4509..5730Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14118 4510..5730 +
1691480740.1712463-UTR-H-paniculata_contig14118:4509..57301691480740.1712463-UTR-H-paniculata_contig14118:4509..5730Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14118 4510..5730 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929123.932228-CDS-H-paniculata_contig14118:151..1981622929123.932228-CDS-H-paniculata_contig14118:151..198Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14118 152..198 +
1691480740.1164393-CDS-H-paniculata_contig14118:151..1981691480740.1164393-CDS-H-paniculata_contig14118:151..198Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14118 152..198 +
1622929123.9442456-CDS-H-paniculata_contig14118:646..7671622929123.9442456-CDS-H-paniculata_contig14118:646..767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14118 647..767 +
1691480740.127811-CDS-H-paniculata_contig14118:646..7671691480740.127811-CDS-H-paniculata_contig14118:646..767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14118 647..767 +
1622929123.9575458-CDS-H-paniculata_contig14118:1772..19131622929123.9575458-CDS-H-paniculata_contig14118:1772..1913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14118 1773..1913 +
1691480740.1362593-CDS-H-paniculata_contig14118:1772..19131691480740.1362593-CDS-H-paniculata_contig14118:1772..1913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14118 1773..1913 +
1622929123.9668226-CDS-H-paniculata_contig14118:2648..27291622929123.9668226-CDS-H-paniculata_contig14118:2648..2729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14118 2649..2729 +
1691480740.1444805-CDS-H-paniculata_contig14118:2648..27291691480740.1444805-CDS-H-paniculata_contig14118:2648..2729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14118 2649..2729 +
1622929124.0536292-CDS-H-paniculata_contig14118:3340..35111622929124.0536292-CDS-H-paniculata_contig14118:3340..3511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14118 3341..3511 +
1691480740.1525092-CDS-H-paniculata_contig14118:3340..35111691480740.1525092-CDS-H-paniculata_contig14118:3340..3511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14118 3341..3511 +
1622929124.0683877-CDS-H-paniculata_contig14118:4377..45091622929124.0683877-CDS-H-paniculata_contig14118:4377..4509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14118 4378..4509 +
1691480740.1605215-CDS-H-paniculata_contig14118:4377..45091691480740.1605215-CDS-H-paniculata_contig14118:4377..4509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14118 4378..4509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14118.2513.1

>prot_H-paniculata_contig14118.2513.1 ID=prot_H-paniculata_contig14118.2513.1|Name=mRNA_H-paniculata_contig14118.2513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=231bp
MMPSPDDPPEVDPRRRDPDKPTEYPPVRMPVVDVGGGQMDVISRLLKDRI
LLLGQQVNDEVANVLVAQLLYLANDDPEKDITLYINSPGGSVSAGMAIYD
AMQYVPCDVATVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGA
QGQAADIEIQAKEILFIRSLLNSYMAEYCDQPVDKIQDDCDRDFFMTPEE
ALDYGLIDQVVETKTSHISKPSMPSLEEVF*
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mRNA from alignment at H-paniculata_contig14118:116..5730+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14118.2513.1 ID=mRNA_H-paniculata_contig14118.2513.1|Name=mRNA_H-paniculata_contig14118.2513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5615bp|location=Sequence derived from alignment at H-paniculata_contig14118:116..5730+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCCCCATCAGTCTTGGTACCCTCGGTCTACATGGATGATGCCCAGCCC
AGATGATCCCCCGGAGGTCGACCCGCGCCGCAGGTATTTGATGATCGCAA
GACCTTTCTGTGGGTCTATCCAGAGAGATCGTAGTGTATGTAGAAGAGAG
ATTTCCAACCTCTGTCGAATTTTCAACAACACGTGACAGAGAGAAGCTTG
GTATACATCGAAGGACTTGAGCGTGGAAATGATCATGTTTTCACACCCAC
TATTGGCGTACACATGCGAGCCATGGTGGAGTTTGCTGGGGGATCGGAAT
TTATGCCATGGTGCAGACCTGCAGGCCCCTCCTTGGAGTATCATAATGCC
ATGATATGCCAAGTGTGTAGGGCGGGTGGGGGGGGGGGTATAGATGGGTG
GGTATCTGGTTTCGTCATCACCCTATATGAATGTCAGTAGTAACAGGTAT
CTTGTTGCATGTGTAACCATAAACGATTGATGACGCAGCCCTTCGTCTCT
CACGTTTTTTTTGTTGCTTTTTTGGGGGCAGGGACCCCGACAAACCGACC
GAGTATCCTCCCGTAAGGATGCCGGTGGTGGATGTCGGGGGGGGACAGAT
GGATGTGATCTCCAGGTTGTTAAAGGACCGCATTCTTTTGCTCGGCCAAC
AGGTGACTTATTTCACGGGATTTTTTTTGTAAAACACGAATCAAATCATA
GGAACGATGGATGGTAATATTGAAGGAATTCATTAATCAATGAAAAAGAA
AAACCTGATTACATCAATGTAAACATGGCGCTATTATTTTTTCTTTATTC
TTTTAGTTGCAGACTGGTGTTGTGAAATGTTGATTGCGGGACGTGACAGT
CATTGTCTTCTGTGACGGTTCCATCCCCAATCCCCGGGTTTATGTATGGT
AGCCTCAGTTTGAGCTGGGAGCAGGAATCACGGACCATGTGACCAGCCCA
TCAACTGACAAACTTGTATCGACCCACGGCTTCTCCTGACATACAGCAAT
ATACAGCTAATACAAGAGACCAGACCATTGCAAAGAACTACTTCTACCAC
CCCAGCCGTGCCGCTCTGAGAGTATTGTACAGCATAGTCAGTAACAGGAA
ACAAAAACCTACGTGTGTGAGATACTCCGCTATACGAACAGCAGTTATCA
TCACACTGGACAGGATAGTATTTCGGTTCTGGAACGCAAAATGTAGATAA
AATCAAGATCAAAATCAAAATGGCCAAGAAAATAACGTGAATTCCCGACA
AGACCGATCAGATACCGCGAACTCTCACCGCGCTATTTGGGTGACTAGGG
CTCCCCTGTATAAGGCTAGAAGCTATACATAGTGCAGTGAAGACCTCAAA
TGATACGCGCGCTACATTTAAAGATGTTATTTATTAGTAGTAATGCTGTC
ACGGGCCACTTCGTACGGTTCGTGCTTGTCATCGACCCACGAACTCGCTG
CGCTCGTAGTGGCTCACTATATTCGCTTGAAGATTCAGAATCGTTTTTGA
GGAGCTGCTTGAGTACAGACTTGAAAAACTGTTCCGAAAATCCCACTACT
ACCACCACCACCTTACCATGGTAGGGATCTTTATCATTATTATTATTATC
ATTGTATTACTTATTTTTATTTTTTCCCACTTGTCTGCCTCCGATTGCCG
CAAACAGGTGAACGACGAGGTGGCGAATGTGCTGGTTGCACAGCTGCTGT
ACTTGGCCAACGACGACCCGGAGAAGGACATCACTCTTTACATCAACTCG
CCCGGGGGATCCGTGTCCGCGGGCATGGCCATTTACGACGCCATGCAGGT
AAAGTACACATAGTTCATAACATACTGAACCTGCTCGTTGGCCCTCTCGG
TTCATTTCTGGCGTATTTCGCGATCAATAATACTTGAGAGTTTGAGCATA
TTTTGGAACCAAAGGTGCGCGTGTTTCGTCCTTTACTCGTATCAGTAAGT
ATACGGCAGACTTGTTCAAAGACAAGGGAAGCGGGGGGGGGGCGAAGGGG
AGGAGGTTGTTAACCCCATTTTTGTTGCTAGGGGGAGGGACTCTATCTCA
ACCGTTTTTTGTCATTTGTTGTGGGGGTCGAAATCGACTGGCTGTTAATT
CAACAACCAGTAAAAATGTTCCTCCTCCACTCATATGTATTAAGTCGAGA
ACGAAGAAGCAAACACACAGATTGCACGAGAGGAGAGTTGACACGGTCGA
ACTTCGTCAAGTCTGTGTAAAACAGCTCAGATTTTACCGGCTGCTCCAGC
ACCGCAAGTACCATGTGATGAGTTGACCATTGCACCCTCCCTTATTTATC
TACTTTTGCTGATACATGTACAACAATTAGGTTTGACGTGACCTCCATGT
CCTCAACATGGGTACAGTGGAGTTCATTTATGAGGTTCAGAGATACTGTT
TGACTTACAAATGAGACTCCCGGTGTGTGATAGGGACTTGTGTTCATTTT
CAGGGTGTACCTCCCTCTACCTTCCACCCTCAATCCCCCCCCCCTCCCCC
TTCTTGTCGTGCCTGCGGTTTTTGCTGCGATAGTACGTGCCCTGCGATGT
GGCAACTGTGTGCTTCGGGACGGCAGCGTCAATGGGGGCTTTCCTTCTGG
GGGCAGGGGCGAAGGTAAGTCGAAGACTGATCTTGTTTGTATCTAGTTTG
GGATGTTTGGGCGGCGGCACAGCCTCTTTCACTAGGTTGCCCCGGGTCTT
GTGGATCTTATGGGTAGATGTGGCAACGACGGGGAAATGAGAAAGCTGAC
ACTAGATAGATCAGTCCCGCACGCGGGCGAAAATGACCGGTGCACTACTA
CATGTGTCATTATGGATTAGGTGCGTAGTCTTTGCGTCATGATCCTGCCG
AGATCCCATCCATATTTGCTCATACTGACAGTACCTGGAATCATGACAAT
GAATGATGAATGTACGTTGTTGTATACCTGTATTGCAAACAGCCGAATTT
GTCGGCCTGCAGAAAAATGTACAGCTCGTCCAAGTGGAACAATAACGCCT
CCCCCTCTTTCAACAGACCGAAAATAGCTAATTTTTTCGCCCCGCTGCTC
ACAGAGTAGTGAATCCAAAAAGAGAAATAGCCGTAACTGTTCATATGTAT
CTGCCACCTATCCGGCGTGGCGGTTACGATTTTCGTGAGTACTCCAACTT
TTTTTAATGGTATTTTGTCTGTGTTTTGTCCTGATGGGCGCTTCCTATAT
TGTGTGTGTGTGTGTGTGTGTGCAGGGAAAGCGTCGATCGCTACCGAACG
CACGCATCATGATTCACCAGCCTCTGGGAGGCGCACAGGGGCAGGCGGCG
GATATCGAGATCCAGGCAAAGGAGATCCTCTTCATCCGGTCGCTGCTCAA
CTCCTACATGGCAGAATACTGCGATCAACCGGTCGACAAAATCCAGGCAC
GTTCTTACCTGATGTCCTTATGTCCTCGTGCTAGAACCATACGGCTACGC
CGGTGTAGTTGTTGCTTGTCCTCGACCCATGGGCTCGTTGCGCTCGCATA
AACTTTGTTCCGAGTACCGAGAAAAAGGACTAGGTCATTTCAGTGAAGTC
GTCTTTTTTTTTTTCAGGTCATCCATGTTCAAAATAACTTCCCTTTCATT
TAGGCTCGGCCGAAGTCGTGTGCAGTAGATAGGGAAAATTATGCGCCCGA
ACCTGTAAATATTGGCATTTTTCATTCGGGGGGGGGGGGGGGGGGGTTGT
CCACATGGTTGATGACCAAAACCCTACCTTATTGAGAAGAGAAGAAATGC
CGTGGTTTTTTGTTACTGCATTATTGAGAACCACCTGTCAACTCGCTCTG
AGTTTAAATGATGAAAGACATTGGGCCTTTCCGTCCTGCACGAAATATAT
TCGTGTTTCCTATTTCAGATGTTTCGGCGTTTTTCCAAACTTCCACCTAC
CCTATTTTTTTAGTTTTACAATAATATTCCTACTTCAGATTTTATTGGGT
CGGTAGGTATTATATGCACAGGGGCTTAGTGGGTGCAACCCCCACACTGC
CTACGTGGTTCGGCCGAACCGGGGTGGCGCCTACCTCGCAGAGGAATAAA
TAACTCTTTTCTGTTGAAGGAAATGTAGAAATACTTCGGTAAAATACTTG
GAGTATGGAAGCATTGGTAAAGGTTTTTGCCTTAGCCTTCCGGGGGTTAA
AAAAAGAAAAAATGCATAGGGGTAATATCCGCCCTAACTCCCGTATCTCC
TTTGTCTGTCTTTCTCGTACGCACACACGCACACGCTTACGCAACGACAT
GAACTAAATCAGGATGACTGTGACAGGGACTTTTTCATGACCCCCGAGGA
AGCGTTAGACTACGGCTTGATCGACCAGGTGGTAGAGACGAAGACGAGCC
ACATTTCCAAGCCATCCATGCCCAGCCTCGAGGAGGTTTTCTAGAGAAGC
TAGATTTTATTGGCCTTTGTAGAGCAAGTCGGGGTGGTTACTGATGGTGG
TCTAGCTTGTTTGTTGTGGGTGGTTTGGTTGTGCTTGTTTCCAGGGTTTT
GTAGGTTGTAGTGTTTTTTGAAAGGGAGATAAGGACGGTCAGCAGCAGCG
GAATGAGGCAGAATGGAGAATGGTTTTTGATCAGGGATCGGTTCTGCGAT
GGGTCGCGGCGTGGGGTGATATCGGCCCGACTCTGTAGCCTCGAAACATG
ATGGACAATTGAAGGCTGATACGGGTAAGGGGACAAGGGTCGGGAATAAC
AAAATCATGGGAGGTTCCGAGAAGTGTCACTGGAACGGCTGGCTGCTCTA
TGCATGTTGTGGTGAACGTATTGGATAGAGGTACGAGCTGGTTCATATTG
GTAGGCGCGCTGTCTTGGGCCACGGTCGTAGCTCTAAAGTTCATCCTGCG
TCTAATGTGTGGTGGCGTCGCACGAATCGTCCTGGTTCAAAGATTATGGG
TGAAACAGTGTTCCAGTTACAATTTTCCCTAATATTCGGGACGTTTCGGA
ACATTGACGCGTTTCGGAATTATTCATGTGTCTTGACACGGTTTTACGGG
TTCTTTCCTCCGAAATTCTGTGTACTTGGTCCTGAAAACATGGCCGAGGT
GGCGAGTGTTGAATCGTTCGATATAGGTGTCGTGATCAACGGTTATTCGG
CGTCATTGAAACTTGGATTCGTCTCGGACCCTAGAAGAGAGGTGAGGAAC
TAGGGGAAAGTGCACACAAGAGCCAGCAGTGGCGATCTCGGGTGGGGAGT
CAGGAACACATGATGTGCACAATATCATTGTCCAACGGCCGTTCTTGAAG
AGGTGGTGTGTTTGCTCAATTCTTTCGTTTCCCGGAAGATGGAAATTGCG
CGATAGCGAGCTCGAAATTCAGGGAAAGGTGCGGAACCGTTCTGTAGCAT
GTTACCGTCCTATATCTGAAAAACGTTTTCCCACGTCATGAAGTTGTTCA
GCTCGTTTTCGCGAATATCGCTTTTCGGGAAATGGAAATAATATAAGATA
ATGGATTCATTTAAATTAGAACGATGCTAACTCGAAAAATTTGGGTGAGA
AATGGAGATATGTGCTGCTCCCCAACATTTTGGTGGTTAACCCGGAAATA
TCTGCCCGTACGACCGTGCGGAAACATGACAAGTATCATTCATTCGTAAG
TGTCGTTCAGTAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14118:116..5730+

>mRNA_H-paniculata_contig14118.2513.1 ID=mRNA_H-paniculata_contig14118.2513.1|Name=mRNA_H-paniculata_contig14118.2513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at H-paniculata_contig14118:116..5730+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCCCAGCCCAGATGATCCCCCGGAGGTCGACCCGCGCCGCAGATG
ATGCCCAGCCCAGATGATCCCCCGGAGGTCGACCCGCGCCGCAGGGACCC
CGACAAACCGACCGAGTATCCTCCCGTAAGGATGCCGGTGGTGGATGTCG
GGGGGGGACAGATGGATGTGATCTCCAGGTTGTTAAAGGACCGCATTCTT
TTGCTCGGCCAACAGGGACCCCGACAAACCGACCGAGTATCCTCCCGTAA
GGATGCCGGTGGTGGATGTCGGGGGGGGACAGATGGATGTGATCTCCAGG
TTGTTAAAGGACCGCATTCTTTTGCTCGGCCAACAGGTGAACGACGAGGT
GGCGAATGTGCTGGTTGCACAGCTGCTGTACTTGGCCAACGACGACCCGG
AGAAGGACATCACTCTTTACATCAACTCGCCCGGGGGATCCGTGTCCGCG
GGCATGGCCATTTACGACGCCATGCAGGTGAACGACGAGGTGGCGAATGT
GCTGGTTGCACAGCTGCTGTACTTGGCCAACGACGACCCGGAGAAGGACA
TCACTCTTTACATCAACTCGCCCGGGGGATCCGTGTCCGCGGGCATGGCC
ATTTACGACGCCATGCAGTACGTGCCCTGCGATGTGGCAACTGTGTGCTT
CGGGACGGCAGCGTCAATGGGGGCTTTCCTTCTGGGGGCAGGGGCGAAGT
ACGTGCCCTGCGATGTGGCAACTGTGTGCTTCGGGACGGCAGCGTCAATG
GGGGCTTTCCTTCTGGGGGCAGGGGCGAAGGGAAAGCGTCGATCGCTACC
GAACGCACGCATCATGATTCACCAGCCTCTGGGAGGCGCACAGGGGCAGG
CGGCGGATATCGAGATCCAGGCAAAGGAGATCCTCTTCATCCGGTCGCTG
CTCAACTCCTACATGGCAGAATACTGCGATCAACCGGTCGACAAAATCCA
GGGAAAGCGTCGATCGCTACCGAACGCACGCATCATGATTCACCAGCCTC
TGGGAGGCGCACAGGGGCAGGCGGCGGATATCGAGATCCAGGCAAAGGAG
ATCCTCTTCATCCGGTCGCTGCTCAACTCCTACATGGCAGAATACTGCGA
TCAACCGGTCGACAAAATCCAGGATGACTGTGACAGGGACTTTTTCATGA
CCCCCGAGGAAGCGTTAGACTACGGCTTGATCGACCAGGTGGTAGAGACG
AAGACGAGCCACATTTCCAAGCCATCCATGCCCAGCCTCGAGGAGGTTTT
CTAGGATGACTGTGACAGGGACTTTTTCATGACCCCCGAGGAAGCGTTAG
ACTACGGCTTGATCGACCAGGTGGTAGAGACGAAGACGAGCCACATTTCC
AAGCCATCCATGCCCAGCCTCGAGGAGGTTTTCTAG
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