mRNA_H-paniculata_contig141.2503.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig141.2503.1
Unique NamemRNA_H-paniculata_contig141.2503.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig141.2503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig141contigH-paniculata_contig141:3463..4134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size672
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig141.2503.1prot_H-paniculata_contig141.2503.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig141 3535..3954 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929122.9313672-UTR-H-paniculata_contig141:3462..35341622929122.9313672-UTR-H-paniculata_contig141:3462..3534Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig141 3463..3534 +
1691480739.6708388-UTR-H-paniculata_contig141:3462..35341691480739.6708388-UTR-H-paniculata_contig141:3462..3534Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig141 3463..3534 +
1622929122.965307-UTR-H-paniculata_contig141:3954..41341622929122.965307-UTR-H-paniculata_contig141:3954..4134Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig141 3955..4134 +
1691480739.705412-UTR-H-paniculata_contig141:3954..41341691480739.705412-UTR-H-paniculata_contig141:3954..4134Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig141 3955..4134 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929122.9489403-CDS-H-paniculata_contig141:3534..39541622929122.9489403-CDS-H-paniculata_contig141:3534..3954Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig141 3535..3954 +
1691480739.684335-CDS-H-paniculata_contig141:3534..39541691480739.684335-CDS-H-paniculata_contig141:3534..3954Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig141 3535..3954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig141.2503.1

>prot_H-paniculata_contig141.2503.1 ID=prot_H-paniculata_contig141.2503.1|Name=mRNA_H-paniculata_contig141.2503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
MCLQQYLVQAAEGEMGQEAVRSLLLLEVVCVNLKFQQWQLKCLDQVSASD
YFEWFCTQDTDCNEQGFGFTQARSFSASCVETISTGYHALVMGRCDASLC
LNVTASSLLGCDHVPSPGCIGKGVAQQSCRCPTRTSDMR*
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mRNA from alignment at H-paniculata_contig141:3463..4134+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig141.2503.1 ID=mRNA_H-paniculata_contig141.2503.1|Name=mRNA_H-paniculata_contig141.2503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=672bp|location=Sequence derived from alignment at H-paniculata_contig141:3463..4134+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGTATGCGAAGGCTGACGGGGGGGAAAAGTTCTCTGAGACTCTGAACA
TTATCAACGATATGGTGAGGAGATGTGCCTGCAGCAGTATTTAGTGCAAG
CCGCAGAGGGTGAAATGGGGCAGGAAGCCGTAAGATCATTATTATTGTTG
GAAGTGGTATGTGTCAATTTGAAGTTTCAGCAGTGGCAACTAAAATGCTT
AGATCAAGTTAGTGCTAGCGACTATTTTGAATGGTTTTGTACGCAAGATA
CTGACTGTAATGAACAAGGATTCGGTTTTACACAGGCCAGGAGTTTCAGT
GCATCATGTGTAGAGACAATCAGCACCGGGTACCATGCGTTGGTGATGGG
CCGCTGTGACGCGAGTCTCTGTCTTAATGTAACGGCTAGCTCCCTCTTGG
GGTGCGATCATGTACCATCACCAGGGTGCATTGGCAAAGGCGTTGCGCAG
CAAAGCTGTCGTTGTCCGACCCGTACATCAGATATGCGATAGAGGAGAGC
TCGGCAACTAGTATTCATTTTTGTAATGGAGCTATAATACCAGGTGTAAA
TACGTTGGGCCTTGTATCCAGATATCTTGTAAATAACAGCACCAACTTAC
TGTCGCATTCCTATTTACAGCTTCACCACGAGCGGCATGAACTATCTTTA
TCTTGTCAGCTCACCTCTCATC
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Coding sequence (CDS) from alignment at H-paniculata_contig141:3463..4134+

>mRNA_H-paniculata_contig141.2503.1 ID=mRNA_H-paniculata_contig141.2503.1|Name=mRNA_H-paniculata_contig141.2503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig141:3463..4134+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCCTGCAGCAGTATTTAGTGCAAGCCGCAGAGGGTGAAATGGGGCA
GGAAGCCGTAAGATCATTATTATTGTTGGAAGTGGTATGTGTCAATTTGA
AGTTTCAGCAGTGGCAACTAAAATGCTTAGATCAAGTTAGTGCTAGCGAC
TATTTTGAATGGTTTTGTACGCAAGATACTGACTGTAATGAACAAGGATT
CGGTTTTACACAGGCCAGGAGTTTCAGTGCATCATGTGTAGAGACAATCA
GCACCGGGTACCATGCGTTGGTGATGGGCCGCTGTGACGCGAGTCTCTGT
CTTAATGTAACGGCTAGCTCCCTCTTGGGGTGCGATCATGTACCATCACC
AGGGTGCATTGGCAAAGGCGTTGCGCAGCAAAGCTGTCGTTGTCCGACCC
GTACATCAGATATGCGATAGATGTGCCTGCAGCAGTATTTAGTGCAAGCC
GCAGAGGGTGAAATGGGGCAGGAAGCCGTAAGATCATTATTATTGTTGGA
AGTGGTATGTGTCAATTTGAAGTTTCAGCAGTGGCAACTAAAATGCTTAG
ATCAAGTTAGTGCTAGCGACTATTTTGAATGGTTTTGTACGCAAGATACT
GACTGTAATGAACAAGGATTCGGTTTTACACAGGCCAGGAGTTTCAGTGC
ATCATGTGTAGAGACAATCAGCACCGGGTACCATGCGTTGGTGATGGGCC
GCTGTGACGCGAGTCTCTGTCTTAATGTAACGGCTAGCTCCCTCTTGGGG
TGCGATCATGTACCATCACCAGGGTGCATTGGCAAAGGCGTTGCGCAGCA
AAGCTGTCGTTGTCCGACCCGTACATCAGATATGCGATAG
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