mRNA_H-paniculata_contig14072.2490.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14072.2490.1
Unique NamemRNA_H-paniculata_contig14072.2490.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14072.2490.1 vs. uniprot
Match: D7FXS5_ECTSI (Mg2+ transporter-e family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS5_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.720e-13
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 DAAAISMSLFLIVMTSVLLGSALPFGFARTGVDPAHAGTSIQV 129
            DA+AIS SLFLIVM SVLLGSALPFGFAR GVDPA+AGT+IQV
Sbjct:  247 DASAISSSLFLIVMASVLLGSALPFGFARAGVDPANAGTTIQV 289
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BLAST of mRNA_H-paniculata_contig14072.2490.1 vs. uniprot
Match: A0A150GIY2_GONPE (MgtE domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GIY2_GONPE)

HSP 1 Score: 65.9 bits (159), Expect = 6.790e-12
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 DAAAISMSLFLIVMTSVLLGSALPFGFARTGVDPAHAGTSIQV 129
            +AAAIS+SLFLIVMTSV+LG+ LPF  AR GVDPA+AGTSIQV
Sbjct:  146 NAAAISVSLFLIVMTSVVLGTGLPFALARAGVDPANAGTSIQV 188
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BLAST of mRNA_H-paniculata_contig14072.2490.1 vs. uniprot
Match: A0A8J4CLL9_9CHLO (MgtE domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CLL9_9CHLO)

HSP 1 Score: 65.9 bits (159), Expect = 1.990e-11
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 DAAAISMSLFLIVMTSVLLGSALPFGFARTGVDPAHAGTSIQV 129
            +AAAIS+SLFLIVMTSV+LG+ LPF  AR GVDPA+AGTSIQV
Sbjct:  356 NAAAISISLFLIVMTSVVLGTGLPFALARAGVDPANAGTSIQV 398
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BLAST of mRNA_H-paniculata_contig14072.2490.1 vs. uniprot
Match: D8U437_VOLCA (MgtE domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U437_VOLCA)

HSP 1 Score: 65.9 bits (159), Expect = 2.000e-11
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 DAAAISMSLFLIVMTSVLLGSALPFGFARTGVDPAHAGTSIQV 129
            +AAAIS+SLFLIVMTSV+LG+ LPF  AR GVDPA+AGTSIQV
Sbjct: 2386 NAAAISVSLFLIVMTSVVLGTGLPFALARAGVDPANAGTSIQV 2428
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BLAST of mRNA_H-paniculata_contig14072.2490.1 vs. uniprot
Match: A0A7R9V570_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V570_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 2.160e-11
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 DAAAISMSLFLIVMTSVLLGSALPFGFARTGVDPAHAGTSIQV 129
            +A AIS+SLF+IVM+SVLLG+ LPFG AR GVDPA+AGTSIQV
Sbjct:  246 NATAISLSLFMIVMSSVLLGTGLPFGLARLGVDPANAGTSIQV 288
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BLAST of mRNA_H-paniculata_contig14072.2490.1 vs. uniprot
Match: A0A2K3D1M8_CHLRE (MgtE domain-containing protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3D1M8_CHLRE)

HSP 1 Score: 64.3 bits (155), Expect = 6.900e-11
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 DAAAISMSLFLIVMTSVLLGSALPFGFARTGVDPAHAGTSIQV 129
            +A AIS+SLFLIVMTSV+LG+ LPF  AR GVDPA+AGTSIQV
Sbjct:  311 NAVAISISLFLIVMTSVVLGTGLPFALARAGVDPANAGTSIQV 353
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BLAST of mRNA_H-paniculata_contig14072.2490.1 vs. uniprot
Match: A0A836BBC7_9CHLO (MgtE domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836BBC7_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 7.000e-11
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 DAAAISMSLFLIVMTSVLLGSALPFGFARTGVDPAHAGTSIQV 129
            +A AIS+SLFLIVMTSV+LG+ LPF  AR GVDPA+AGTSIQV
Sbjct:  400 NAVAISISLFLIVMTSVVLGTGLPFALARAGVDPANAGTSIQV 442
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BLAST of mRNA_H-paniculata_contig14072.2490.1 vs. uniprot
Match: A0A7S0X0V8_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0X0V8_9CHLO)

HSP 1 Score: 63.9 bits (154), Expect = 8.450e-11
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 DAAAISMSLFLIVMTSVLLGSALPFGFARTGVDPAHAGTSIQV 129
            +AAAIS+SLFLIVMTSV+LG+ LPF  A+ GVDPA+AGTSIQV
Sbjct:  267 NAAAISLSLFLIVMTSVVLGTGLPFVLAKAGVDPANAGTSIQV 309
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BLAST of mRNA_H-paniculata_contig14072.2490.1 vs. uniprot
Match: A0A836BXZ3_9CHLO (MgtE domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BXZ3_9CHLO)

HSP 1 Score: 63.5 bits (153), Expect = 1.290e-10
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 DAAAISMSLFLIVMTSVLLGSALPFGFARTGVDPAHAGTSIQV 129
            +AAAIS+SLFLIVM SV+LGS LPF  AR GVDPA+AGTSIQV
Sbjct:  341 NAAAISVSLFLIVMISVVLGSGLPFVLARAGVDPANAGTSIQV 383
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BLAST of mRNA_H-paniculata_contig14072.2490.1 vs. uniprot
Match: A0A835SIG2_CHLIN (MgtE domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SIG2_CHLIN)

HSP 1 Score: 63.5 bits (153), Expect = 1.310e-10
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 DAAAISMSLFLIVMTSVLLGSALPFGFARTGVDPAHAGTSIQV 129
            +A AIS+SLF+IVMTSV+LG+ LPF  AR GVDPA+AGTSIQV
Sbjct:  385 NAVAISISLFMIVMTSVVLGTGLPFALARAGVDPANAGTSIQV 427
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14072.2490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXS5_ECTSI1.720e-1386.05Mg2+ transporter-e family n=1 Tax=Ectocarpus silic... [more]
A0A150GIY2_GONPE6.790e-1279.07MgtE domain-containing protein n=1 Tax=Gonium pect... [more]
A0A8J4CLL9_9CHLO1.990e-1179.07MgtE domain-containing protein n=2 Tax=Volvox reti... [more]
D8U437_VOLCA2.000e-1179.07MgtE domain-containing protein n=1 Tax=Volvox cart... [more]
A0A7R9V570_9CHLO2.160e-1176.74Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A2K3D1M8_CHLRE6.900e-1176.74MgtE domain-containing protein n=2 Tax=Chlamydomon... [more]
A0A836BBC7_9CHLO7.000e-1176.74MgtE domain-containing protein n=1 Tax=Chlamydomon... [more]
A0A7S0X0V8_9CHLO8.450e-1176.74Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A836BXZ3_9CHLO1.290e-1079.07MgtE domain-containing protein n=1 Tax=Edaphochlam... [more]
A0A835SIG2_CHLIN1.310e-1074.42MgtE domain-containing protein n=1 Tax=Chlamydomon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14072contigH-paniculata_contig14072:6372..6500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue2.3e-08
Seed eggNOG ortholog2880.D7FXS5
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Divalent cation transporter
EggNOG OGs2S0JS@2759,COG2239@1
Ec32 ortholog descriptionSLC41 divalent cation transporters, integral membrane domain
Ec32 orthologEc-03_001650.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size129
Cds size111
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929121.161595-UTR-H-paniculata_contig14072:6371..63891622929121.161595-UTR-H-paniculata_contig14072:6371..6389Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14072 6372..6389 +
1691480738.9000313-UTR-H-paniculata_contig14072:6371..63891691480738.9000313-UTR-H-paniculata_contig14072:6371..6389Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14072 6372..6389 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929121.1837275-CDS-H-paniculata_contig14072:6389..65001622929121.1837275-CDS-H-paniculata_contig14072:6389..6500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14072 6390..6500 +
1691480738.9187355-CDS-H-paniculata_contig14072:6389..65001691480738.9187355-CDS-H-paniculata_contig14072:6389..6500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14072 6390..6500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14072.2490.1prot_H-paniculata_contig14072.2490.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14072 6390..6500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14072.2490.1

>prot_H-paniculata_contig14072.2490.1 ID=prot_H-paniculata_contig14072.2490.1|Name=mRNA_H-paniculata_contig14072.2490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=37bp
MSLFLIVMTSVLLGSALPFGFARTGVDPAHAGTSIQV
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mRNA from alignment at H-paniculata_contig14072:6372..6500+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14072.2490.1 ID=mRNA_H-paniculata_contig14072.2490.1|Name=mRNA_H-paniculata_contig14072.2490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=129bp|location=Sequence derived from alignment at H-paniculata_contig14072:6372..6500+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGCAGCGGCAATTTCCATGAGCTTGTTTTTGATCGTGATGACTTCCGT
GCTGCTGGGGTCCGCTCTTCCCTTCGGGTTCGCTCGGACCGGCGTCGACC
CGGCGCACGCCGGAACTAGCATCCAGGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig14072:6372..6500+

>mRNA_H-paniculata_contig14072.2490.1 ID=mRNA_H-paniculata_contig14072.2490.1|Name=mRNA_H-paniculata_contig14072.2490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at H-paniculata_contig14072:6372..6500+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCTTGTTTTTGATCGTGATGACTTCCGTGCTGCTGGGGTCCGCTCT
TCCCTTCGGGTTCGCTCGGACCGGCGTCGACCCGGCGCACGCCGGAACTA
GCATCCAGGTCATGAGCTTGTTTTTGATCGTGATGACTTCCGTGCTGCTG
GGGTCCGCTCTTCCCTTCGGGTTCGCTCGGACCGGCGTCGACCCGGCGCA
CGCCGGAACTAGCATCCAGGTC
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