mRNA_H-paniculata_contig14059.2481.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14059.2481.1
Unique NamemRNA_H-paniculata_contig14059.2481.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14059.2481.1 vs. uniprot
Match: A0A6H5K5N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N3_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 3.930e-5
Identity = 21/37 (56.76%), Postives = 29/37 (78.38%), Query Frame = 3 
Query:    3 AEMCARHADEGMVDVVSKKCSHRGCSLKPSYGVAGTK 113
            AE C++H  + MV+VVSK+C H GC+ +PSYG AG+K
Sbjct:   22 AEFCSQHKQQDMVNVVSKRCGHPGCTKQPSYGRAGSK 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14059.2481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5N3_9PHAE3.930e-556.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14059contigH-paniculata_contig14059:103..992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size890
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14059.2481.1prot_H-paniculata_contig14059.2481.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14059 111..620 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929120.0738099-UTR-H-paniculata_contig14059:102..1101622929120.0738099-UTR-H-paniculata_contig14059:102..110Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14059 103..110 +
1691480738.4445944-UTR-H-paniculata_contig14059:102..1101691480738.4445944-UTR-H-paniculata_contig14059:102..110Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14059 103..110 +
1622929120.1007018-UTR-H-paniculata_contig14059:620..9921622929120.1007018-UTR-H-paniculata_contig14059:620..992Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14059 621..992 +
1691480738.4724283-UTR-H-paniculata_contig14059:620..9921691480738.4724283-UTR-H-paniculata_contig14059:620..992Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14059 621..992 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929120.0884695-CDS-H-paniculata_contig14059:110..6201622929120.0884695-CDS-H-paniculata_contig14059:110..620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14059 111..620 +
1691480738.4560266-CDS-H-paniculata_contig14059:110..6201691480738.4560266-CDS-H-paniculata_contig14059:110..620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14059 111..620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14059.2481.1

>prot_H-paniculata_contig14059.2481.1 ID=prot_H-paniculata_contig14059.2481.1|Name=mRNA_H-paniculata_contig14059.2481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=170bp
MCARHADEGMVDVVSKKCSHRGCSLKPSYGVAGTKQAEMCARHADDGMVN
VRESKSTSRGGRVKKPSSLSQVKLEVASEDVDGHGCSATVQTGRKRNSAL
TLSSHSGSSTSRESRSAKRARMFGRLSIIEQLALRTPAGGMSSLHNGANL
KTEVAALRRSVPDPVIQQH*
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mRNA from alignment at H-paniculata_contig14059:103..992+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14059.2481.1 ID=mRNA_H-paniculata_contig14059.2481.1|Name=mRNA_H-paniculata_contig14059.2481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=890bp|location=Sequence derived from alignment at H-paniculata_contig14059:103..992+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCAGAGATGTGTGCGCGGCATGCGGACGAGGGAATGGTGGACGTGGTG
AGCAAGAAGTGCTCCCATCGGGGCTGCTCTTTGAAGCCGTCGTATGGGGT
GGCGGGGACGAAACAGGCAGAGATGTGTGCGCGGCATGCCGACGACGGGA
TGGTTAATGTGAGAGAGAGCAAGAGCACTAGCCGCGGCGGTCGTGTGAAG
AAACCGTCTAGTCTCTCGCAGGTTAAGCTTGAAGTGGCTTCGGAGGACGT
CGATGGTCATGGATGTTCCGCGACTGTGCAGACAGGCAGAAAACGCAACT
CCGCACTAACGCTTTCGTCACACAGCGGTAGTTCTACCTCGCGCGAGAGT
CGCAGCGCAAAGCGGGCTCGCATGTTCGGTAGATTAAGTATCATAGAGCA
GCTAGCCCTCCGCACGCCTGCGGGAGGCATGTCATCTCTCCACAATGGGG
CTAATCTGAAGACTGAGGTGGCTGCATTGCGGCGTTCCGTGCCGGACCCC
GTTATACAGCAGCACTGACTGCTGCTGGTCGTGGAGGCATCAAGTGTGAA
GCGTGTTTCGAAACACGAGAGAGTCGTTGGTGATGATGCCGCCATTTTTA
GTATTTAGACATGGTAATAGAGACATGGCTCGCGCAGGAGACTGTACTGC
TGGCATGAATTTTGGGTGCCCAGGAGTTGCTTGAGTACAGATTTGAAAAA
CTGTTCCAACACGACAAAATGTTTGGTGTCCAGAAGCTGCTTCGAGATCG
ACCCGAGCATGAACCGCCCGAGAGACTCCTTATGGATGCTTGCGTCGGAA
ACAAGATGGTCCAGACGAGATATGTCACCTGGGAGGCGCCAGCTACTACG
CTACCGCCGGTACCGTTGTCTGCGGTACAGGAGGCGGTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig14059:103..992+

>mRNA_H-paniculata_contig14059.2481.1 ID=mRNA_H-paniculata_contig14059.2481.1|Name=mRNA_H-paniculata_contig14059.2481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at H-paniculata_contig14059:103..992+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTGCGCGGCATGCGGACGAGGGAATGGTGGACGTGGTGAGCAAGAA
GTGCTCCCATCGGGGCTGCTCTTTGAAGCCGTCGTATGGGGTGGCGGGGA
CGAAACAGGCAGAGATGTGTGCGCGGCATGCCGACGACGGGATGGTTAAT
GTGAGAGAGAGCAAGAGCACTAGCCGCGGCGGTCGTGTGAAGAAACCGTC
TAGTCTCTCGCAGGTTAAGCTTGAAGTGGCTTCGGAGGACGTCGATGGTC
ATGGATGTTCCGCGACTGTGCAGACAGGCAGAAAACGCAACTCCGCACTA
ACGCTTTCGTCACACAGCGGTAGTTCTACCTCGCGCGAGAGTCGCAGCGC
AAAGCGGGCTCGCATGTTCGGTAGATTAAGTATCATAGAGCAGCTAGCCC
TCCGCACGCCTGCGGGAGGCATGTCATCTCTCCACAATGGGGCTAATCTG
AAGACTGAGGTGGCTGCATTGCGGCGTTCCGTGCCGGACCCCGTTATACA
GCAGCACTGAATGTGTGCGCGGCATGCGGACGAGGGAATGGTGGACGTGG
TGAGCAAGAAGTGCTCCCATCGGGGCTGCTCTTTGAAGCCGTCGTATGGG
GTGGCGGGGACGAAACAGGCAGAGATGTGTGCGCGGCATGCCGACGACGG
GATGGTTAATGTGAGAGAGAGCAAGAGCACTAGCCGCGGCGGTCGTGTGA
AGAAACCGTCTAGTCTCTCGCAGGTTAAGCTTGAAGTGGCTTCGGAGGAC
GTCGATGGTCATGGATGTTCCGCGACTGTGCAGACAGGCAGAAAACGCAA
CTCCGCACTAACGCTTTCGTCACACAGCGGTAGTTCTACCTCGCGCGAGA
GTCGCAGCGCAAAGCGGGCTCGCATGTTCGGTAGATTAAGTATCATAGAG
CAGCTAGCCCTCCGCACGCCTGCGGGAGGCATGTCATCTCTCCACAATGG
GGCTAATCTGAAGACTGAGGTGGCTGCATTGCGGCGTTCCGTGCCGGACC
CCGTTATACAGCAGCACTGA
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