mRNA_H-paniculata_contig1405.2476.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1405.2476.1
Unique NamemRNA_H-paniculata_contig1405.2476.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1405.2476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1405contigH-paniculata_contig1405:13476..19023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size457
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929119.5964355-CDS-H-paniculata_contig1405:13475..137961622929119.5964355-CDS-H-paniculata_contig1405:13475..13796Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1405 13476..13796 +
1691480738.244431-CDS-H-paniculata_contig1405:13475..137961691480738.244431-CDS-H-paniculata_contig1405:13475..13796Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1405 13476..13796 +
1622929119.6204712-CDS-H-paniculata_contig1405:18888..190231622929119.6204712-CDS-H-paniculata_contig1405:18888..19023Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1405 18889..19023 +
1691480738.2540011-CDS-H-paniculata_contig1405:18888..190231691480738.2540011-CDS-H-paniculata_contig1405:18888..19023Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1405 18889..19023 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1405.2476.1prot_H-paniculata_contig1405.2476.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1405 13476..19023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1405.2476.1

>prot_H-paniculata_contig1405.2476.1 ID=prot_H-paniculata_contig1405.2476.1|Name=mRNA_H-paniculata_contig1405.2476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
AGEACRKLRKKLEASFDRPSCVDSSWVRVGLVESSVGIGSVKVSVASTVA
SLGAQGDLQLVGAEVDNCNEGRDNGDDDGVGGQMGDCFGDGSSGGEGLAT
TAPVLLTIDSMVFKVKWASFFPWSAVRRIPSVRVVGLTIHINDALALRQR
AS
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mRNA from alignment at H-paniculata_contig1405:13476..19023+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1405.2476.1 ID=mRNA_H-paniculata_contig1405.2476.1|Name=mRNA_H-paniculata_contig1405.2476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5548bp|location=Sequence derived from alignment at H-paniculata_contig1405:13476..19023+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGGGGAAGCCTGCCGCAAGCTTAGGAAAAAACTGGAGGCTTCCTTTGA
CCGACCTTCCTGCGTCGATTCAAGTTGGGTTCGAGTAGGTCTGGTGGAGA
GCTCTGTAGGCATCGGATCGGTAAAAGTCTCAGTAGCAAGTACAGTGGCA
TCACTGGGAGCCCAGGGTGACTTGCAACTTGTTGGTGCGGAAGTTGACAA
TTGCAATGAAGGTAGGGATAACGGTGATGATGACGGGGTTGGTGGTCAGA
TGGGCGATTGCTTCGGCGACGGAAGCAGCGGTGGTGAAGGATTGGCTACT
ACTGCTCCTGTCCTCTTGACGGTAAGATGTTGGTATTTTAGACGTATGTA
TGGCAAACTTCTATTTTTGCTGGTTGTAACTTGTATTTTATTATTTATTT
TGCAACACCTTTTCCACATGACACGCAAAGTATGACAGAACCGATCTGCG
ACCCGACTTGATTTGGAAAAAAACGATGGCGAACTGGTTGTTGAAAAATG
AAAAAATTGAAAGAATCCTTCCACGAACCAGTTCCGATTCAGGTCAGGTA
TACAAGCCATGTTGAATGCCATTTATTGGAAAAATATAGTTGTGTCGTAA
ACCCTTTTTCTCATCCATTACTCCTGAATACTCTAGTATGGATCCTGTAC
CGATGCCATGTGCAGCTAGCACACCACACCCAATAGGTCGTGATAATAAT
TTCGACACACTGTTTAATGCTTCCCTACTCAAGTGCGTTGGCTATTTGTT
AGCAAGCTGTCCTGCGTTTTTGTCCTGTGTGGTTCACGTGTCGAAGCGTC
AAGGGCGCATTTTAAAAATCAGTTTCGGGTACACCTTTCTACCATCCCCA
ACAAAAAATACAACGAAATGCCGAAGATGTATGCAAACGGAGAGGTTCCT
TCTCTGCGTCTAGCAGTAGCAGGGAGATCACTGTTTCAGCAGAAGAGGTG
GATACATTCAAGGGCTCAGGGGTATAACAATATATATATAAAGGATACCA
TCAAGTCGCTTCTAGGGCACGACTGAAACTGCACAGACAGTCAAAGGGGG
AAAGCCGTGCCAGCGCTCGCCGGGAAAAATCGAACATGTTATAACTTGTT
GCTACGTAGGCAACTCAAAATATTGGTGGTTCTTAAGAAGCTAGAGTACC
ACTGCATCAACATGCCATTCGATGAGGAGCAGATGAAGCCGTTGGCGGAG
TTGATCTCCATTTCCGTCGCGGCGACTGTGCAGCAGCAGCAAGCCGCAGC
CGCCCATATGCCGTCCATGCCACAGCAGCTGCCACCACGGCTACGCGACC
ACCGACGACGGATGGCCCAAAGCTCAAGGTCGATCTGCAGACGTTCTCCG
GGGACAAGGCAGCTTGGGGCGACTGCCACAAGGTCTATACGTCACAGGCC
AGGATACTCGGCTTGGAGATATGCCACTTCAACTTCGATCAGGCGTGCCT
GCTGACCGACATCGACACCGAGATGTACGTCAATCTGCCGGAGGAATACC
GGGAGTTCCCGGGGGCAGTGGGAAGGCTGAACAAGGCAATCTACGACCTG
CTACAGGCCGGCAGGTGCTGGAACGTGAAGCTCACCGACGACCTGAAAAC
GTTGGGGTTCGAGCAGTCGCATGCCGATCCCTGCGTGTTCCGCAAGTTTG
TTACCGTGGAGCTGGTGGCGATCCTCGTGGTGCACGTAGACGACCTTCTG
GCCCTAACCACCACGAAGGGAGGTAGTGGAGGCGTTCATGAGGGACATGG
GCTCGAAGTATAAGGTCAAAGATCTAGGGGAGGCGTCGTATTACATGGGC
TGCCACATCACCCGTAACCGGTAGAAGAGGGAGCTGAAGTTCGATCAGCC
CCTCTAAGCGCAGACAATCGCGGACCGCTTCGAGATTAACAAGACGACCA
TGGTCCTGGCGACGCTAGGCGTGAAACGGCTGTCGAAGGAGGACGGGTCG
CAGACCCCGGAGGAGAAGGAGAAAATGCACGGGATCCCGTACCGCGAAGC
AATGGGAATGCTCATGTGGGCATCGACCATGACGCGGCCGGACATCTCGA
GTGCTGTCCGCGCCGCGGTCAAATGCTGCGAGAACCCCAGCATGGTGCAC
TGGAAGGCTGTGGTGAAGATCCTACAGTACGTGCGGTGGACCCAGGGCAT
GGGGATCACCCATGGCGAAGACGGGAACGGCGGGATTGAGATGCGGGCAT
TCGCAAGCCCAGACAACGCTACATGCCCAGACACTAAGTGTTCGTTTTCA
GGGGGGGCAGTACTTCTGGGCGGGGGCGATCGGCTGGTTCTCGCGGACCC
AGGAGACTAACGTGGCAGGTACTTCGGAAGCGGAGTACGTGGCACGTTCG
GAGATTGTTGAGGAATTACTTTTTCTCGCCAGGTGCAGGCGCACATCATG
CCCACTCTGGAGAACAACCCCATGGATATCACGGAGGACAACGAGGGGGC
TATCAAGATGGCCGACAATAGGCACTCCCGCAAGAGAACGAGGGACATCG
ACATCAAGCATCACATAATTCGCGACTCCGTGGACGAGGGAAACGTTCGC
ATCATCTACGTCGAGAGTGGAGACCAACACGCGGACGTGCTCACTAAGCC
ATTGGATGGGACCTCGCTTGAAATGCACGTCAACGCTCTGATGGATGCTG
CTTGAATAAGTAATGGGAAAGTAGCATTGCAATACCGAGGTGGGGGAACG
AGGCGTTTATTTTAGAAAAGCTATGTTTCATTTCGAGTTTGAAAGTAGAG
AAAAAGCGTTGGAACATTGCACGCAATAGGAGTAGAGGTCTAAGTGCTCC
GTAGAACAAGTGAGGGTGTTCGCGGTATCTACTCTACTGAGTACATTAAC
CCGTGGGAATGTTCAGTAGGAAGTTCTAAGAATCGTTCTGGACGTTCCCT
AAGAAAGTTTGTGAGAACCGTCTCGGGTTTCCAGGAATATCGTTTTGTTG
CCATGGTGCACATGGGGTTTGGGCCTGCCCCACCTCGGTCACTTCATCCG
TCCTACCCAACGGAGCCAAGGGTTCCTTCATCGAGCAGAGCAGTAGTAAA
AGATCACGGTTTCAGCAGAAGAGGTAGATACCTTCGAGGGTTCAGGGGTA
TTATCTAAAGATATAAAAATGATATAATCAATGATATAATCAAGTCGCTT
CTAGGGCACGCTTGAGACTGCATAGACGGTGAAAAGGGGAAAGCAGTGCC
AGCGCTCGCCAGGAGATATCGAACAAATTGTCGTCCAAAATGAGTCTGTC
TTGAATGTTAAACCAACATACCATTTTCTATTCCCGGCATCCCAAGTATA
CTTCCCCGCAATAAGGACACTTATTCTCTGGATGCACATATGCTGTCCTG
GAAGCGCGGGCTACTACTGTACCGGGGAGGGCGACAACTGCATCCCGGGC
GAAGCGGTGGCCTGAACTATTGGAAGGTGGTTAGTCGGGTGTCCATTCAC
ACAGCTAGCTCATCCGTCATCTTGAACCACGGGTTAGAAGGAGGCGTACT
GAGCGTAGCGCGCACGAGGTGCCGTAAGGGTAACTCCGCATTATAGTTAT
CACCAAGTTCTTTGTGTCTTTATATGATACACAGATTTGTATATCAGCCC
GATAACCTTTAGCAGGGTGTGTGCTGGAGGGTATTCGTCAAAGGCGGGAG
CGAGCCTCAGCGAGCGTAGAGGAGATTCAGGGTTGTCCGTCCGCCCCGCA
AGCATTACCTTGCGACATTGCGCCACAAAATATGGGGAGAGTTTTTACTC
TGCTAATATGTTTGCTAGGGCCATCAACCAACAATGCTGGAGTGGTTTTC
ATTGTCTCAGAAGTCGCTCAGCGATCGAAGCTGGGTCGGGTGTTGGACAC
GGAAAAATTAATTCTTCCCCGAGGGCCGAAGAAATTTATATGCAGCATGT
TCTACAGTAGTGGATCCGATGCTAGACCGGATATTTTAAGTCGTTCTGAT
TTGCGGCAGGAGTTTTTGGCAGGGCACAGCAGTCGCTACAGTGGTTACTC
AGTTTTATTTAGTATACCGTGGTTCTATTTAGCTTTGGGGCGGACGTACA
GTAGCGGCCTCAAGTTCGGTCCACTCCCTCTATCGGCTATGTCCTATATT
CAAAATTGGAGGGAAACCCTCTGTCTATCCGGGTCTTATACCAGATACTG
AGGCTGATGCAACCTTTGCAGAGGAGGCTGAACCCGAAACCCCGCGGCGG
CCATGTTTAGTGCGCCGAACAATGTGATTGGCCCATTCTAACTCTCTCGA
GCGTTGAACGATTCGCACTTCGATATTGTCTCGCTTGCTCCCATCTCTTT
CTCGATCCTGCCAAGCACGCAAGAACGGCAGGGGGCGCCGTCGTCCTGTA
TACGCCATCCTCCATCCCCGATAGTTTTCTTCAATCACCGTGTCTTTCGA
GTATTTACGCAAGAGTAGGCCTGGTGCAACACCTTGTTTGTTCACTTGAC
TTGAAAAGTGATTTCCGTTAAATGCATTAGTAAAACAGCATGTGAAATGG
GACTAATGATAGGGCACTTCGTAGGTACAGAAGCGTGGCGACTTGGGTAA
TGAAGCTCCAGAAAATAGCCGAACGACCCAAGTCTAACAACGGAATTTTT
TCGAGGTGCATTTTTCTCCAGAAATATATCATTGATTTATGAAAGTCTAG
AGCTTTAATACTATAGAACGCGAAAATTCAAACACCGGTGCACGCAAACT
CTAAAGAGCTCCAGTTTGCCTTAATCAAAGGAGTCCCAAGTCCGCGGAAT
CCAACGCCTTAACTCTTTCTCCGTAAGTTGTCGACCTGCTGAACGGGCTC
TCTCCGACAACACTATTTAGGATATTTCTTTGCTTGTTTTAACTTGATAT
TTTGTATGGTGATTCAGACGACAAGTTGGAACGTTTTTGACTGTCGGGTG
CAGTGCTAACTGGCTTTGTAGCTGACTTTCCTCGTCGCCCGTTGCCCCAG
CACCGTTTTGCCAACCTCAAGGCGCCAACGGTTTGATGAGGAGCTACAGC
ACCAACAGATGTAGCGTCTGGATGTAACTTTATCCCAATATTTCGGATGG
TCTCACTATACGCTGTTTGTAATACCTCTACGTATATAGCTCCGTATGTG
CATGGACTCAACTGCGTCAGAGATGGTTGGGTGTTGACGCGTCGAATGAA
AACATTTTACAAACAGTTCAAGGCGCGTGTTTTAGTCTTTTCTGAAGCTT
TTCAATGCCTGAAAAAGTGGTGAAGAAAGCCCGATCCTCTCCCCCACGGC
CAGCCTGCCCTGCATCGCCCTCTTCTTCTCCCCTACCCAGATCGTACAAA
GCATTCCGCAGAAGAAATTTATCGTCTTGCGCTTTTTTTTCTTTTTTTTC
AAATCATTTGGTGCGGGGGCGATGTCACTTAATACCCCCGTCTTTTCTTG
GTGTAAAAACCAGATCGATTCGATGGTCTTCAAAGTCAAATGGGCGAGCT
TCTTCCCGTGGTCCGCTGTCCGCCGGATACCCAGCGTGCGCGTGGTCGGT
TTGACCATTCACATCAACGACGCCCTCGCTCTGCGGCAGCGCGCCAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1405:13476..19023+

>mRNA_H-paniculata_contig1405.2476.1 ID=mRNA_H-paniculata_contig1405.2476.1|Name=mRNA_H-paniculata_contig1405.2476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig1405:13476..19023+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGGGGAAGCCTGCCGCAAGCTTAGGAAAAAACTGGAGGCTTCCTTTGA
CCGACCTTCCTGCGTCGATTCAAGTTGGGTTCGAGTAGGTCTGGTGGAGA
GCTCTGTAGGCATCGGATCGGTAAAAGTCTCAGTAGCAAGTACAGTGGCA
TCACTGGGAGCCCAGGGTGACTTGCAACTTGTTGGTGCGGAAGTTGACAA
TTGCAATGAAGGTAGGGATAACGGTGATGATGACGGGGTTGGTGGTCAGA
TGGGCGATTGCTTCGGCGACGGAAGCAGCGGTGGTGAAGGATTGGCTACT
ACTGCTCCTGTCCTCTTGACGGCCGGGGAAGCCTGCCGCAAGCTTAGGAA
AAAACTGGAGGCTTCCTTTGACCGACCTTCCTGCGTCGATTCAAGTTGGG
TTCGAGTAGGTCTGGTGGAGAGCTCTGTAGGCATCGGATCGGTAAAAGTC
TCAGTAGCAAGTACAGTGGCATCACTGGGAGCCCAGGGTGACTTGCAACT
TGTTGGTGCGGAAGTTGACAATTGCAATGAAGGTAGGGATAACGGTGATG
ATGACGGGGTTGGTGGTCAGATGGGCGATTGCTTCGGCGACGGAAGCAGC
GGTGGTGAAGGATTGGCTACTACTGCTCCTGTCCTCTTGACGATCGATTC
GATGGTCTTCAAAGTCAAATGGGCGAGCTTCTTCCCGTGGTCCGCTGTCC
GCCGGATACCCAGCGTGCGCGTGGTCGGTTTGACCATTCACATCAACGAC
GCCCTCGCTCTGCGGCAGCGCGCCAGCATCGATTCGATGGTCTTCAAAGT
CAAATGGGCGAGCTTCTTCCCGTGGTCCGCTGTCCGCCGGATACCCAGCG
TGCGCGTGGTCGGTTTGACCATTCACATCAACGACGCCCTCGCTCTGCGG
CAGCGCGCCAGC
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