mRNA_H-paniculata_contig1401.2452.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1401.2452.1
Unique NamemRNA_H-paniculata_contig1401.2452.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1401.2452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1401contigH-paniculata_contig1401:23302..24990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1689
Cds size1299
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1401.2452.1prot_H-paniculata_contig1401.2452.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1401 23643..24941 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929113.3791924-UTR-H-paniculata_contig1401:23301..236421622929113.3791924-UTR-H-paniculata_contig1401:23301..23642Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1401 23302..23642 +
1691480736.5394173-UTR-H-paniculata_contig1401:23301..236421691480736.5394173-UTR-H-paniculata_contig1401:23301..23642Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1401 23302..23642 +
1622929113.412252-UTR-H-paniculata_contig1401:24941..249901622929113.412252-UTR-H-paniculata_contig1401:24941..24990Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1401 24942..24990 +
1691480736.5577824-UTR-H-paniculata_contig1401:24941..249901691480736.5577824-UTR-H-paniculata_contig1401:24941..24990Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1401 24942..24990 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929113.3930106-CDS-H-paniculata_contig1401:23642..249411622929113.3930106-CDS-H-paniculata_contig1401:23642..24941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1401 23643..24941 +
1691480736.5491414-CDS-H-paniculata_contig1401:23642..249411691480736.5491414-CDS-H-paniculata_contig1401:23642..24941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1401 23643..24941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1401.2452.1

>prot_H-paniculata_contig1401.2452.1 ID=prot_H-paniculata_contig1401.2452.1|Name=mRNA_H-paniculata_contig1401.2452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=433bp
MGEGASLNFVDITVNDEEFVVDKARACSGHVEGQCPSTRSETNGSSVVSN
VAADKSPPSSYSNRAGKVVDVELLPGILQKASVLSEEIWANRSGEVVLVN
TEGANVLAGPGSEKYENAALDLKMEGESVVDDHDAEVHADSCVPSYEKAR
SSDTRKSPKDVGESSVPDQERGMAAEVSAGGSIGRDWAAQANSSKAAGDW
WEEASTPSSEVDTAGEDDLYAILESARHEVLSNPGKGGDDSGDGQFATAT
TEHVSSMVRKKSSGPGTSPSGHASLPAKTAGREFKFEVLDMSHSNPPVDG
GNDRLHGGDFSNSSRAYYPDGDSAGGGVPCAVSVRVADGTDMAGDQASEI
ENVAKQGGTAAPSYDAELPSSRDGRGGRSSRATFPTNEGHAGAGEVRAKG
IVLRGLADKAVVQGRDRGASTRTPSCSCCVLM*
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mRNA from alignment at H-paniculata_contig1401:23302..24990+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1401.2452.1 ID=mRNA_H-paniculata_contig1401.2452.1|Name=mRNA_H-paniculata_contig1401.2452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1689bp|location=Sequence derived from alignment at H-paniculata_contig1401:23302..24990+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGGGAGGCTGAAGAGCAAGATACGTCTCCTACATGCAACGCCGACGGC
GTTGCCGTCGCGGACAAGGCCTTGAGCTTGAACACTGCCGATATTGCGGC
GAACTGTGAAGAGATTTTCGCGGACAAGACGAGCGGCGTGGGTCGGGAGG
CTGAAGAGCAAGATACGTCTCCTACATGCAACGCCGACGGCGTTGCCGTC
GCGGACGAGGCCTTGAGCTTGAACACTGCCGATATTGCGGCGAACTGTGA
AGAGCTTGTCGTGGGCAACGCGGATGGCGCTTATGAGCAGGTTGAGGAGC
AGAATACGCTTGCTAACAGCGATACCGGCGGTGTTGCCGTCATGGGGGAG
GGCGCGAGCTTGAATTTTGTCGACATCACCGTGAACGATGAAGAGTTTGT
GGTGGACAAGGCGAGGGCCTGTAGTGGACATGTCGAAGGACAGTGTCCCT
CCACCAGGAGCGAAACCAATGGCTCTTCCGTTGTCTCAAACGTGGCCGCG
GACAAGAGCCCGCCTTCATCATACTCGAACAGAGCTGGGAAAGTTGTGGA
TGTGGAGCTGCTGCCTGGTATCCTACAAAAGGCTTCCGTACTTTCCGAAG
AAATCTGGGCCAATCGTAGTGGGGAAGTTGTGTTAGTAAACACGGAAGGG
GCGAATGTGCTTGCTGGACCAGGGTCTGAGAAGTATGAAAATGCTGCATT
GGACCTGAAGATGGAAGGTGAAAGCGTCGTTGATGACCACGACGCGGAAG
TCCACGCCGACAGCTGTGTGCCATCTTATGAGAAGGCTCGATCCTCAGAC
ACGAGAAAAAGCCCCAAAGATGTTGGGGAGTCATCTGTCCCCGATCAGGA
GAGAGGGATGGCCGCAGAGGTCTCCGCCGGAGGGTCGATTGGAAGAGATT
GGGCGGCGCAAGCGAACAGTTCCAAAGCTGCCGGCGACTGGTGGGAAGAA
GCATCTACGCCATCTTCTGAGGTAGATACCGCCGGCGAGGATGATCTGTA
CGCTATCCTGGAGAGCGCGAGGCACGAAGTATTGTCGAACCCGGGCAAGG
GCGGCGATGACAGTGGGGATGGTCAGTTTGCTACTGCGACGACCGAGCAC
GTCTCTTCAATGGTTCGGAAAAAGTCCAGCGGTCCTGGAACCTCACCGAG
CGGTCATGCCTCCCTTCCCGCGAAGACGGCAGGGAGGGAGTTCAAGTTCG
AGGTCCTTGACATGTCGCACTCGAACCCTCCCGTCGACGGCGGTAATGAT
CGGCTGCACGGCGGCGACTTTTCGAATTCCTCTCGAGCCTACTACCCCGA
TGGTGACTCTGCTGGAGGTGGAGTTCCATGTGCTGTGTCTGTTCGCGTTG
CCGACGGCACCGACATGGCCGGCGATCAGGCTTCAGAAATCGAGAATGTT
GCGAAGCAGGGAGGTACGGCCGCGCCTTCATACGATGCCGAGTTGCCATC
ATCGCGTGATGGTCGTGGAGGGCGTAGCAGTAGAGCTACCTTCCCGACTA
ACGAAGGCCATGCAGGAGCTGGTGAGGTGCGAGCTAAAGGAATCGTTCTT
CGTGGGCTAGCTGATAAGGCAGTTGTTCAAGGACGGGACCGGGGTGCTTC
AACCCGTACACCTTCGTGCAGTTGCTGCGTGTTGATGTGACGTGGTTACA
CTCGATCGGGATTTTTTTTCTGTATCTTTTGTTGGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1401:23302..24990+

>mRNA_H-paniculata_contig1401.2452.1 ID=mRNA_H-paniculata_contig1401.2452.1|Name=mRNA_H-paniculata_contig1401.2452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2598bp|location=Sequence derived from alignment at H-paniculata_contig1401:23302..24990+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGAGGGCGCGAGCTTGAATTTTGTCGACATCACCGTGAACGATGA
AGAGTTTGTGGTGGACAAGGCGAGGGCCTGTAGTGGACATGTCGAAGGAC
AGTGTCCCTCCACCAGGAGCGAAACCAATGGCTCTTCCGTTGTCTCAAAC
GTGGCCGCGGACAAGAGCCCGCCTTCATCATACTCGAACAGAGCTGGGAA
AGTTGTGGATGTGGAGCTGCTGCCTGGTATCCTACAAAAGGCTTCCGTAC
TTTCCGAAGAAATCTGGGCCAATCGTAGTGGGGAAGTTGTGTTAGTAAAC
ACGGAAGGGGCGAATGTGCTTGCTGGACCAGGGTCTGAGAAGTATGAAAA
TGCTGCATTGGACCTGAAGATGGAAGGTGAAAGCGTCGTTGATGACCACG
ACGCGGAAGTCCACGCCGACAGCTGTGTGCCATCTTATGAGAAGGCTCGA
TCCTCAGACACGAGAAAAAGCCCCAAAGATGTTGGGGAGTCATCTGTCCC
CGATCAGGAGAGAGGGATGGCCGCAGAGGTCTCCGCCGGAGGGTCGATTG
GAAGAGATTGGGCGGCGCAAGCGAACAGTTCCAAAGCTGCCGGCGACTGG
TGGGAAGAAGCATCTACGCCATCTTCTGAGGTAGATACCGCCGGCGAGGA
TGATCTGTACGCTATCCTGGAGAGCGCGAGGCACGAAGTATTGTCGAACC
CGGGCAAGGGCGGCGATGACAGTGGGGATGGTCAGTTTGCTACTGCGACG
ACCGAGCACGTCTCTTCAATGGTTCGGAAAAAGTCCAGCGGTCCTGGAAC
CTCACCGAGCGGTCATGCCTCCCTTCCCGCGAAGACGGCAGGGAGGGAGT
TCAAGTTCGAGGTCCTTGACATGTCGCACTCGAACCCTCCCGTCGACGGC
GGTAATGATCGGCTGCACGGCGGCGACTTTTCGAATTCCTCTCGAGCCTA
CTACCCCGATGGTGACTCTGCTGGAGGTGGAGTTCCATGTGCTGTGTCTG
TTCGCGTTGCCGACGGCACCGACATGGCCGGCGATCAGGCTTCAGAAATC
GAGAATGTTGCGAAGCAGGGAGGTACGGCCGCGCCTTCATACGATGCCGA
GTTGCCATCATCGCGTGATGGTCGTGGAGGGCGTAGCAGTAGAGCTACCT
TCCCGACTAACGAAGGCCATGCAGGAGCTGGTGAGGTGCGAGCTAAAGGA
ATCGTTCTTCGTGGGCTAGCTGATAAGGCAGTTGTTCAAGGACGGGACCG
GGGTGCTTCAACCCGTACACCTTCGTGCAGTTGCTGCGTGTTGATGTGAA
TGGGGGAGGGCGCGAGCTTGAATTTTGTCGACATCACCGTGAACGATGAA
GAGTTTGTGGTGGACAAGGCGAGGGCCTGTAGTGGACATGTCGAAGGACA
GTGTCCCTCCACCAGGAGCGAAACCAATGGCTCTTCCGTTGTCTCAAACG
TGGCCGCGGACAAGAGCCCGCCTTCATCATACTCGAACAGAGCTGGGAAA
GTTGTGGATGTGGAGCTGCTGCCTGGTATCCTACAAAAGGCTTCCGTACT
TTCCGAAGAAATCTGGGCCAATCGTAGTGGGGAAGTTGTGTTAGTAAACA
CGGAAGGGGCGAATGTGCTTGCTGGACCAGGGTCTGAGAAGTATGAAAAT
GCTGCATTGGACCTGAAGATGGAAGGTGAAAGCGTCGTTGATGACCACGA
CGCGGAAGTCCACGCCGACAGCTGTGTGCCATCTTATGAGAAGGCTCGAT
CCTCAGACACGAGAAAAAGCCCCAAAGATGTTGGGGAGTCATCTGTCCCC
GATCAGGAGAGAGGGATGGCCGCAGAGGTCTCCGCCGGAGGGTCGATTGG
AAGAGATTGGGCGGCGCAAGCGAACAGTTCCAAAGCTGCCGGCGACTGGT
GGGAAGAAGCATCTACGCCATCTTCTGAGGTAGATACCGCCGGCGAGGAT
GATCTGTACGCTATCCTGGAGAGCGCGAGGCACGAAGTATTGTCGAACCC
GGGCAAGGGCGGCGATGACAGTGGGGATGGTCAGTTTGCTACTGCGACGA
CCGAGCACGTCTCTTCAATGGTTCGGAAAAAGTCCAGCGGTCCTGGAACC
TCACCGAGCGGTCATGCCTCCCTTCCCGCGAAGACGGCAGGGAGGGAGTT
CAAGTTCGAGGTCCTTGACATGTCGCACTCGAACCCTCCCGTCGACGGCG
GTAATGATCGGCTGCACGGCGGCGACTTTTCGAATTCCTCTCGAGCCTAC
TACCCCGATGGTGACTCTGCTGGAGGTGGAGTTCCATGTGCTGTGTCTGT
TCGCGTTGCCGACGGCACCGACATGGCCGGCGATCAGGCTTCAGAAATCG
AGAATGTTGCGAAGCAGGGAGGTACGGCCGCGCCTTCATACGATGCCGAG
TTGCCATCATCGCGTGATGGTCGTGGAGGGCGTAGCAGTAGAGCTACCTT
CCCGACTAACGAAGGCCATGCAGGAGCTGGTGAGGTGCGAGCTAAAGGAA
TCGTTCTTCGTGGGCTAGCTGATAAGGCAGTTGTTCAAGGACGGGACCGG
GGTGCTTCAACCCGTACACCTTCGTGCAGTTGCTGCGTGTTGATGTGA
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